>input_sequence_74633
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--------------------------------------------------ATGGAGCGCGGCGATGCTGCCACCGGCAGC
GGCAGCCGCAGCGGTGCGGGAACGAGCATCCAGGTCACGGCTCTGGACGGCATCGTGAACGTGAACTCTCTCTTCACCCT
CGCCGCGTTCCTCGGCTTGGCGTGGCGCCCCTCCTCCGACGGGCCAGGCCTCGCCGACGGCGCCGACCACCTGGGCGCCT
GCGCCGCGGGGGACCGCATCGAGTCTGACCTCGTCTCCTTTCACGTCCTCGCCTTCGCTTGTTTCCTCTTCTCCAGCCTC
GTCGCGCTCTGCCTCAAGCAGATCGTCCGCACCTTCCCCCACTACCGCCGTGCCTCCTCCGCCGCCGCCGGAGCCGCCGT
CAGCTGGACGGTGAAGATCAACCGGGCAGCGCTCCGGGTCGGGATCTTGGCGTGCGCGGTGGGATCCGTGTGCGGATGCG
GGTTCCTGACGATGGCCCTCGTCAACGTGGTGCAGGTGAAGCTCGGCCGGCTCGGCTGCGGCGCCGGCGGCTCCGCGGCA
TGGGGCGCCGTCATCCCGCTCGTCACGCTCGTGCCTTCCGCCATGCTGATCTACATTGGCATCGTCTTCTACGCCTTCAC
CCGCTAG-------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G190000
AGTTTCTACAGAATTCTTGTCGATTTTTTTAAACTTCTAAACATGTTTTTTGGTATATATTTTTTCACAAAAAGGACACC
ATGGTGCCCGAGCACACAAAAAACTTCGCACTCCACCCCCGCCCCCAAACAGCCCAAATAGGCCTAAAACATCGCAAAAT
CAAGCGGGC-TGGTGGACTAAATATGTCGGTGGGCCGGCCCGTTTCCTTGTTGTGCCGTGCCTGGGCCAGGAAGTGCAGT
ACGAGTGCCGGCCCAGCATGGCCTGTATATCAGGAATGCCTGGTGGGCCGTGCTAGCCGGCCAGGTCTGTGTGAAACGAT
AACTTTGGGAGCTTATGAAAAATCGCAAAAAAGAAAACCAGTAGCGGTACCGCTGAAACTCGAACCGGCGACCTCGTACT
AATTGGCCCGGCG-------------------------------------------------------------------
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------------------------------------------TGCGAACAATTTTTCGAA--------------------
---------------GATTTCAAAAATGCGACTTTTTTAAAAAAGAGGAACATTTTTTGAATTTATGAACAATTTTTTAA
AACACGAGCATTTTTTGAAATTTTGAAATTTTCCCAAAACAGGAACATTTTATGAAAATTTTCAACAATTTTGGAAAGAT
GGTCTTTAAAAAAATAAACTTGAAAAGTAAAATAAACGAAAAAGCAAAAAAGT---------------------AAACAG
AAAAGCGGAAAAAGAAGAAAATAAAAAAACTAAAAACAAAAAGAACCCAAGAAGAAACAGGAAAATGGGTCAAAAAGAAA
AAAAAAGGTCCAGGGAACCTTCTAGAAGGTTCCCAAAACCGGGATACTGTAGCACGGTAATCCACCAGTAGTGGGCCGGG
CCATGTCGCTCGCTCTCTCCTGTTCCATGTGCGTTCCTTCCACAATTTGCCGCAATTAGCGTCAAATAGGATATTCCGGT
AATTTTGGCCTAGGTAAGCATATGCTCGCACGGTCAGTCGGTCACATCGACCAGACGACAGCCCCTGCCCGATCCCCAAA
CCCACCCACCG----CATCCTAGTCCACCTCCGAACCAAGGATCCAAGCCATGGAGCGCGGCGATGCTGCCACCGGCAGC
GGCAGCCGCAGCGGTGCGGGAACGAGCATCCAGGTCACGGCTCTGGACGGCATCGTGAACGTGAACTCTCTCTTCACCCT
CGCCGCGTTCCTCGGCTTGGCGTGGCGCCCCTCCTCCGACGGGCCAGGCCTCGCCGACGGCGCCGACCACCTGGGCGCCT
GCGCCGCGGGGGACCGCATCGAGTCTGACCTCGTCTCCTTTCACGTCCTCGCCTTCGCTTGTTTCCTCTTCTCCAGCCTC
GTCGCGCTCTGCCTCAAGCAGATCGTCCGCACCTTCCCCCACTACCGCCGTGCCTCCTCCGCCGCCGCCGGAGCCGCCGT
CAGCTGGACGGTGAAGATCAACCGGGCAGCGCTCCGGGTCGGGATCTTGGCGTGCGCGGTGGGATCCGTGTGCGGATGCG
GGTTCCTGACGATGGCCCTCGTCAACGTGGTGCAGGTGAAGCTCGGCCGGCTCGGCTGCGGCGCCGGCGGCTCCGCGGCA
TGGGGCGCCGTCATCCCGCTCGTCACGCTCGTGCCTTCCGCCATGCTGATCTACATTGGCATCGTCTTCTACGCCTTCAC
CCGCTAGCCTGAATCGGATCCAGTAACTCCACTTAGTGCTTCCTTTGCATTTTCTTATGCTTAGATTATGCGTCTGT---
-----GTGATGACTGATTAGAGTGCAGTGAGATTGCAGCTGACATGCCTGTGTAC---------------------GTAT
CAGTGTGTCCATGCTTGTGTTCTTGGTGTTCTTTGTGTGGGCAACTTTTTGTGTTAGTACTTGGTAGTAGTACTGTACTG
CTTAATTACCTTGATTGACTCCTTTTAGCAAGTCAATTTGTTA--TGATTTGCAAGGTGGCAACTTGATATGCAAAGTCC
AATCTA-----------AAACTAGTGGCTGAATTT-TTGCCTTGTCCTCGTCTGCAATCAGATCCAGTAGAGCTGGAATG
TTTTTCTATGCCAAATCAGGTTTGTTTACCACAAACTTGGAAAAGCTTAGCATAGAGGTAGTAGTTGTCACTCACAATTT
GGACCAGCACAGGAAAATGCCATCCATACCACTCCTTGCATTATTATGGTTAAACAGCCATTTAACATCTGCACAACCAC
CACAATCAAGTGAAGCTCTACCTTCTTGCTAATGCTGCCTATTGGCTTCAGAAAGGATTTCTTGTTTATCAGCAGTCTCC
ACTTGTGCATTGTTCATGAGAGGAACATCATCTGTCAAAAAAACCAGAAGAGTCATCTATTTTGGAACGGAGGGAGTAGC
ATCCAATCCAGAAGCCAATAATTTGTTAAGAAATAACCCAGGTATTGGCATGTTGACTGTAGCAGGTGCACCCAGAAGCA
TCAGACCGAAGCTATGTGACTGCACTGTGTGACACAAACTGTCACTGTAATTCAAACAAACATGAAAAAGTAATCTATAA
CCCAATCTGATCCAGAGATCAGAAAGCAACTCAAATAGATACTCCCTCTGTCCCATAATATAAGAGCGTTTTTGACACTA
GTGTAGTGTAAAAAAACGCTCTTATATTATGGACGGAGGGAGTACAAAATAAGCAGTTCAAGATTAATGTAAGTTGAGGG
CACCACATTC
>chr2D_1
AGTTTCCACAGCATTGTTTTTGATTTTTTTTAACTTCTAAATATGGTTTTTGGTATATATTTTTTCAC-AAAAGGGCACC
ATGGTGCCCGAGCACAC---AAACTTCGCACTCCACCCC-GCCCCCAAACATCCCG--------------------AAAT
CAAGCGGGC-TGGTGGGCTAAACATGTCGGTGGGCCTGCCCGTTTCCTTGTTGTGCCGTGCCTGGGCCAGGAAGCGCAGT
ACGAGTGCCGGCCCAGCATGGCCCGTAAATCAGGAATGCCTGGTGGGCCGTGCTGGCCGGCCAGGTCTGTGTGAAA----
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----------------------------------------------------------------------------CGGT
ATTTTTGGCCTAGGTAAGCATATGCTCGCACGGTCAGTCGGTCACACCGACCAGCCGACAGCCCCTGCCCGATCCCCAAA
CCCACCCACCG----CATCCTACTCCACCTCCGAACCAAGGAACCAAGCCATGGAGCATGGCGATGCTGCCACCGGCAGC
GGCAGCCGCAGCGGTGCGGGAACGAGCATCCAGGTCACGGCTCTGGACGGCATCGTGAACGTGAACTCTCTCTTCACCCT
CGCCGCGTTCCTCGGCTTGGCGTGGCGCCCCTCCTCCGACGGGCCCGGCCTCGCCGACGGCGCCGACCACCTGGGCGCCT
GCGCCGCGGGGGACCGCATCGAGTCTGACCTCGTCTCCTTTCACGTCCTCGCCTTCGCCTGTTTCCTCTTCTCCAGCCTC
GTCGCGCTCTGCCTCAAGCAGATCGTCCGCACCTTCCCCCACTACCGCCGTGCCTCCTCCGCCGCCGCCGGAGCCGCCGT
CAGCTGGACGGTGAAGATCAACCGGGCAGCGCTCCGGGTCGGGATCTTGGCGTCCGCGGTGGGATCCGTGTGCGGGTGCG
GGTTCCTGACGATGGCCCTCGTCAACGTGGTGCAGGTGAAGCTCGGCCGGCTCGGCTGCGGCGCCGGCGGCTCCGCTGCA
TGGGGCGCCGTCATCCCGCTCGTCACGCTCGTGCCTTCCGCCATGCTGATCTACATTGGCATAGTCTTCTACGCCTTCAC
CCGCTAGCTGTAGCCGGATCCAGTAACTCCACTTCATGCTTCGTGTGCATTTTCTCATGCGTAGATTATGCGTCTGTCAG
TCTGTGTGATCACTGATGAGA-TGCAGTAAGATTGCAGCTGAGTTAGATTATGCAGTAAGATGCGTCTGTGTACGTGTAT
CGGTGTGTCTATGCTTTTGTTCTTGGTGTTCTTTA--------------------------------------------G
CTTGATTACCTTGACTTACTTTTTTTTAGCAATTACAGTTTGTAGTGATTTGCAAGTTGGTAACGTGGTATGCAAAGGCC
AATCTAATACTCCTACCAAACTGCTGGCTGAATTTGTTGCCTGGTCTTCATCTCCAATTAGATCCACTAGAGCTGGAATG
TTTTTCTCTGCCAAATCAAGTTTGTTTACCACAAACTTGGC-AAGCTTAGCGTAGAGGT---AGTTGTCATTCACAATTT
TGACCAGCTCAGGAAAATGTCATCCATACCACTCGTTGCATTA-------------------------------------
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>chr2B_79
------------------------------------------------------------------------------CC
ATGGTGCCCGAGCACAC---AAACTTCGCACTCCACCCCCGCCCC-AAACAGCCCAAATAGGCCCAAAACATCCCAAAAT
CAAGCGGGCTTGGTTGGCTAAACATGTCGGTGGGCCGGCCCGTTTCCTTGTTGTGCCGTGCCTGGGCCAGGAAGCGCAGT
ACGAGTGCCGGG-CAGCATGGCCCGTATATCAGGAATGCCTGGTGGGCCGTGCTAGCCGGCCAGGTCTGTGCGAAA----
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----------------------------------------------------------------------------CGGT
AATTTTGGCCTAGGTAAGCATATGCTCGCACGGTCAGTCGGTCACACCGACCAGCCGACAGCCCCTGCCCGATCCCCAAA
CCCATCCACCGCGTCCATCCTACTCCACCTCCGAACCAAGGAACCAAGCCATGGAGCATGGCGATGCTGCCACCGGCAGC
GGCAGCCGCAGCGGTGCGGGAACGAGCATCCAGGTCACGGCTCTGGACGGCATCGTGAACGTGAACTCTCTCTTCACCCT
CGCCGCGTTCCTCGGCTTGGCGTGGCGCCCCTCCTCCGACGGGCCCGGCCTCGCCGACGGCGCCGACCACCTGGGCGCCT
GCGCCGCCGGGGACCGCATCGAGTCTGACCTCGTCTCCTTTCACGTCCTCGCCTTCGCCTGTTTCCTGTTCTCCAGCCTC
GTCGCGCTCTGCCTCAAGCAGATCGTCCGCACCTTTCCCCACTACCGCCGTGCCTCCTCCGCGGCCGCTGGAGCCGCCGT
CAGCTGGACGGTGAAGATCAACCGGGCAGCGCTCCGGGTCGGGATCTTGGCGTCCGCGGTGGGATCCGTGTGCGGATGCG
GGTTCCTGACGATGGCCCTCGTCAACGTGGTGCAGGTGAAGCTCGGGCGGCTCGGCTGCGGCGCCGGCGGCTCCGCGGCA
TGGGGCGCCGTCATCCCGCTCGTCACGCTCGTGCCTTCCGCCATGCTGATCTACATTGGCATCGTCTTCTACGCCTTCAC
CCGCTAGCTGTAGCCGGATCCAGTAACTCCACTTAATGCTTCGTTTGCATTTTCTTATGCTTAGATTATGCGTCTGTCAG
TCTGTGTGATCACTGGTGAGA-TGCAGTAAGATTGCAGCTGA--------------------------------------
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>chr4D_334
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--------------ATGAAAGATCGCAAAAAAGAAAACCGATAGCGCTAA-GCTGAAACTCGAACCGGCGACCTCGTACT
AATTGACCCGGCGTGCAAACCACTCCCACATAGACACTCCCATGTTCAATTCGCAGCGCAACATTTAAAGACACATACGG
CAGCGACAAAACTGCAACATTAATTTGCAAAAAATCCCAAAAACTACAGTCCATGTATTGGGTCGAACCGAGGACCTACA
ACTGAATTTTCCGAAATTACGATATTTTCTTCAAAATAAAAACATTTTCTGAATTTTCGAACAAATTTTGTAAAACATAA
ACATTTTCATGATGTGAACAAATTTGGAAAGAGGGAACATTTTTTGAATTTTTGAACAAAAAATAAAAATGTTTACACTT
TTTCAAACTTCAAGAACATTTTTTGAAACTCCTGAAAAAAAATGAAAACATGAACAATTTTTAAAATTTGTGAACATTTT
TTTAAAACAGGAACATTTTTTGAACATTGTCAAAAAATTCAAAAAGAAACATTCAAACATTTTTTTTGTTAAACAAGAAC
AATTTTTTAAAATTCCAGAACAATTTTCGAAGATTTCAAAAATGCGAACAATTTTTTGAAAAAGAAATTTTTTGAATTTG
TGAACAATTTTTGAGGATTTCAAAAATGCGATTTTTTTTAAAAAGGAACATTG---TTGAATTTATGAACATTTTTTTAA
AACATGAACATTTTTTGAAATTTTGATCTTTTTTAAAAACAGGAACATTTTTTG-AAATTTTCAACAATTTA-GAAAGAT
GTTTTTTT--AAAATAAACTTGAAAAATAAAATAAACGAAAAAGCAAAAAAAAGTAGAAAACAGAAAAAAAAAGAAACAT
AAAAGCAGAAAAAGAAGAAAAGATAAAACGAAAAAC--AAAAAAACCCAAGAAGAAACAAGAAATCTGATCAAAAAG--A
AAAAAAGGTCCAGGGAACCTTCTAGAAGGTTCCCGAAACCGGGATACTGTAGCACGGTAATCCATCAGTAGTGGGCCGGC
CCATGTCGCTCGCTCGCTCCTCTTCCCTGTGCGTTCCTTCGACAATTTGCGGCAATAAGCGTCAAATAGGATATTCCGGA
AT------------------------------------------------------------------------------
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>SNPs
------S----S---S--S-S---------S----------S---S----------------------S------S----
-----------------SSS--------------------------------------------S--------S------
----------------S-----S---------------------------------------------------S-----
-----------------------S----------------------------------------------------SSSS
SSSSSSSSSSSSSS------S------------------SS-----S--SS-----------------------------
-----S--------------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
-------------------------------S------S------SSSS-SSSSSS---------------S--------
----S--S------------------SS----SSS----------------S--S----------------SS-------
-S-S---SSS----------------S------------------------SS--------------------------S
------S--------------S-S----SSS----SSS----S----------------S----SSS-S--------SS-
----------------------------------S-----------------------------S--------------S
---------------S-----S----S-------------S---------S-----S-----------------------
----------------------------------------------S-------S-------------------------
----------------------S-------------------S--------------SS---------------------
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---------------------------------------------S----------------------------------
----------------------------------------------------------S---------------------
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-----------------------------------------------------S--------------------------
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--------SSS-SS---------------------S------S-------------------------------------
----------S------S---S------S-------------SS-SSS-SSSSSS-------------------------
-S-------S------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---S----------S-S---SS----SSSS-S-S-SSS-S-SS-------------S---S---S--S---------S--
----------------------SS------------------S---S--S---S----S-------S-------------
-------S----------S---------------------SS---------S-------SSS--------S---------
S-------S----------S--------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_937
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-------------------------------------CGGCGTGCGAACAATTTTTC-----------------------
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>reverse_2705
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----------------------------------------------------------------ACATCTGCACAACCAC
CACA----------------------------------------------------------------------------
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