>input_sequence_74629
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----------------------------------ATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCATCGCCGCCG
CGGGGCTGGCTGCTCTCCGCGACCACGCCCACGGACACGACGGAGGCGCGGCACCGCCGGCGGCGCCAGACTCGCCCTTC
GACACCAACGTGGTGATCATCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGTGCCGCG------GCAGCCGCCGCCGGCGAGGGCGGGGCGACGGCCCGGGGTGCCA
GCCGTGGAGGCAGCGGCATCAAGAGGCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTCATCGAC
GACGTGTGCGCCATCTGCCTCGGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCACGGTGCGCGCACGGGTTCCA
CGTCCGGTGCGTCGACGCCTGGCTGGTGTCCCATGGCTCCTGCCCCACCTGCCGGCAGCCGGTCATGGAGGGCGCGCCCG
CCAAGGGCGGCAGCGGCGGCGCCGCCCGAAGCCAACGGCCCGTGGGCACGGAAATGATCGCCGTGGTCATCGTGTGA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1D_1_TraesCS1D01G300000
CCGCGCTTGAACCGAGCCTCCCCGCTGGCGCCATGCAGGCCTTGCCCGGCGACGTGCCCTGACGACGGCAAGAGAAGAAG
GCGGCTAGGGTACGGCAACCACCTTGGCCCCTTGCAAAGTGTTACTTCCTTCTTTTCTGTCTAGCAAGCAGTTCAGTACT
GATGTATATTATTATTACATTGTTTTGTTGTGTGCGCACCGCTAGGCTCTCTGATGAAGCGATAGCCGACCGAGCTGCAT
TTACCAGTTCAAAGCCCATTATTTAAAACTAGAACCTAAATATCTAACGAACATCAGATTTGTATGCATGGCAAATCGAA
TGTTTTTTATGTCAAATTATGTTTGCCGAGGATGGCAAGTTTAGTTGACGAGCATGACAAGTTCGCCTCGGTTCATTTTT
-TACCAGAAAATTCCCGTACTTGCAAACTAAATTTGCTATCACGGCGCCCATATAAATCACCATAAAAAAACGTTCAAAG
CGACGAACGGGCGGTTGCGACGCCGTCTTCGCCTCATTAAAACCGCAGTACAGCGTTTGTTCGCCGGCGCACGGTGAGTT
CGCTGTCCAGAGATACCCCCAACCCCAGGTTCGTTCGTTCGTTCGTTGGTTCCATGCACGCAAGGAAAGCCCACGCGAAG
GAGATCCTTCCTTGGCTAGCCCCGCTTTGCCTCCAGCTCCAAAGCCACCAAAAGGCGTGTGTGCGTGTCCCTCCCTATCC
CTGCAGCAGCTCAGCTGCAGGCTGC-AA-----CTTGGCAGGGGAGCGCCCTTTTT--CAAAGTACGCACCCGCGCAAGC
T-CCCCAAGAACG--------GTGGTGCGCACCGGGACCGCGCCCTCTTATATATACCCCACGACCAGAGCAGAGCGT--
--GACAGACA----CGAGTAGCAGCTA----CCACAG--GCATCAATC---CAGTTCCAATA-----------CCTTG--
AAACGGCGGCCGGGCGAACTCATCTCTGATCG---ATCGAGC----TGGG----CGGGCATCA---TCATCA-TCTCTCT
-CTCTCTGATCAACTTCTTTA-----AC-----CATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCATCGCCGCCG
CGGGGCTGGCTGCTCTCCGCGACCACGCCCACGGACACGACGGAGGCGCGGCACCGCCGGCGGCGCCAGACTCGCCCTTC
GACACCAACGTGGTGATCATCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGTGCCGCG------GCAGCCGCCGCCGGCGAGGGCGGGGCGACGGCCCGGGGTGCCA
GCCGTGGAGGCAGCGGCATCAAGAGGCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTCATCGAC
GACGTGTGCGCCATCTGCCTCGGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCACGGTGCGCGCACGGGTTCCA
CGTCCGGTGCGTCGACGCCTGGCTGGTGTCCCATGGCTCCTGCCCCACCTGCCGGCAGCCGGTCATGGAGGGCGCGCCCG
CCAAGGGCGGCAGCGGCGGCGCCGCCCGAAGCCAACGGCCCGTGGGCACGGAAATGATCGCCGTGGTCATCGTGTGAGTT
CATCCGTCGCGCAACGAAAGCATGCCATTGCCTGCCGGACACAGCACAACAAGGTAGCACAGCTCTGCATGCCCAAGCCC
TTGCGGCACCATTTTCCGGCATCGATTGGCATGCTTCA---TGCATGCCAGGCGCTGCTTGCTAATGGAAA---GTATGA
TCGAAGTGCTCAACTGCACATGTAAATATTCGACGGCGCAGAACACTGTACTGGCAACCTGACAGACCGTGAGTAAAAAG
TTTTGCTGGATCAATTTGCCCCCGTGTCCCCCTTTCCGCCGCCGCCGTCGGCATGGGCGCCCGTCCCCTTTTCGGCGCGC
CGGGGACGCAGACGTCGGCGTCAACGTCGGCCGTTTGCCCGGCGCCAGGACGCGACACGTCGACGCGTGACCGTGTGCCG
ACCTGCTGATCCGCGCGCGAACCAACCACCTGCGCAATCGCAACGTGCGTGCGTGCGTCCCAACGGCGTGCCTTAGCCCG
CACGCGACGGCGATCGATCCGGCCGCGCAACCGCCGGGATAACTCCGTCGCGCCAACCGCGCCCACGCGATCGCCACGTC
CAGCGGCACGGACGCCAGCTCCGTC---CGTCGTGGTCACCCGTTGCGCACGCGATGCAGGCATCCTCGC-CCGGGCTAG
T--GGGGGTGGCCCCTGACGCCGATGGGTCGAGGACGACTGACGTTCAGTTCAACCACCTGGACGCT----GCGCGGGTT
AGCTGAATAAGTTCCCCGTCAGTTTCACCCGTCCCGCTCTGCTCTGCCTTTGCCGACTAAAACTATCTCAGGAGTCAGGA
GTTACCACTTCCGTGGCCAAAGGAAGAAAAGGTGGCCACTTCCGTGGC-AACATATGCACATGTACATACGTGATTGGTG
GCTCGATTACTCTATCTGACCACCCAACCATGAATCATCACGTATACATGCTGTTGATTGGACGGTCTAGCTCGATCGGG
TAAGATAAGATCCTCACGCGAGCATATGTGGCACCATCTAGGAGTTACCGCGTT
>chr1B_270
TAAAACCTAAC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TATCTAACTAACATCAGATTTGTATGCATGGCAAATCGAA
TGTTTCTTATGTTAAATTATGTTTGTCGAGGATGGCAAGTTTAGTTGGCGAGCATGGCAAATTCACCCCGATTCATTTTT
TTACCATACAATTATCGTACTTGCAAACTAAATTTGCTATCGTGGTGCCAATATAAATCACCATAAAAAAGCGTTCAAAG
CGACGAACGGGCGGTTGCGACGCCCTCTTTGCCTCATTAAAACCGCAGTACAGCGTTTGTTCGCCGGCGCACGGCGCGTT
CGCTGTCCAGAGATACCCCCAACCCCAGGTTCGTTCGTTCGCTCT--------ATGCACGCAAGGAAAGCCCACGCGAAG
GAGATCCTTCCTTGGCTAGCCCCGCTTTGCCTCCAACTCCAAAGCGACCAAAAGGCGTGTGTGCGTGTCCC----TATCC
CTGCATCAGCTCAGCTGCAGGG-TGCAA-----CTTGGCCGGGGAGCGCCCTTTTT--CAAAGTACACACCCCGCGCAAG
C-CCCCAAGAACGATGGTGGAGTGGTGCGCACCGGG-CCGCGCCCTCTTATATATACCCCACGACCAGAGCAGAGTGTGA
CAGACAGACA----CGGATAGCAGCTA----CCTCAG--GCATCAATC---CAGTTCCAATA-----------CCTTG--
AAACGGCGGCCGGGCGAACTCATCTCTGATCG---ATCGAGC----TGGG----CGGGCATCA---TCATCGATCTCCCT
-CTCTCTGATCAACTTCTTTA-----AC-----CATGGGACGTCCTGACTCGGAGGCGCCGACGTCGAGCATCGCCGCCG
CGGGGTTGTCTGCTCTCCACGACCACGCCCACGGACACGACGGAGGCGCGGCGCCGCCAGCAGCGCCAGACTCGCCCTTC
GACACCAACGTGGTGATCATCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGTGCCACG------GCAGCCGCCACCGGCGAGGGCGGGGCGACGGCCCGGGGTGCCA
GCCGCGGAGGCAACGGCATCAAAAGGCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTCATCGAC
GACGTGTGCGCCATCTGCCTCGGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCGCGCACGGGTTCCA
CGTCCGCTGCGTCGACGCCTGGCTGGTGTCCCACGGCTCCTGCCCCACCTGCCGGCAGCCGGTGATCGAGGGCGCGCCCG
CCAAGGGCGGCAGCGGCGGC------CGAAGCCAGCAGCCCACGGGCAGCGAAATGATCGCCGTGGTCATCGTGTGAGTT
CATC----GGGCAACGAGACAT-GGCATTGCCAGCCGG-CACAGCACTGCAAGGCTGCATACTTCTGCATGCCCAAGCTC
TTGTGGCACCATTTTCCGGCATCGATTGCCATGCTTGCCTTTGCCTGCCAGGCGCTGCTTGCTAGTGGATCAACGTTTGA
TCGAAGTGCTCAGCTGCACATGTAAATATTCGACGGCGCAGAAAACTGTACTGGCAATCTGACAGACCATGAGTAAAAAG
TTTTGCTGGATCAATTTCCTCCCGTGTCCCCCTTTCCGCCGCCGTCGTCGGCATGGGCGCCCGTCCCCTTTTCGGCGCGC
CGGGGACGCAGACGTCG------------GCCGTTTGCCCGGCGCCTGGACGCGACACGTCGACGCGTGCCCGTGGGCCA
AACTGCTGATCCGCGCGCGAACCAACCACATGCGCAATCGCAACGTGCGTGCGTGCGTCCCAACGGCGTGCCTTAGCCCG
CACGCGACGGCGATCGATCGGCGCGCGCAACCGCCGGGATAACTCCGTCGCGCCAACCGCACCCCCGCGATTGCCACGTC
CAGCGGCACGGATGCCAGCTCCGTC---CGTCGTCGTCACCCGGCGCGCACGCGATTCAGGCATCCTCGCGCCGGGCTAG
TGGGGGTGTGGCCCCTGACGCCGACGGATCGAGGACGACTGGCGTTCAGTTCAACCACTTGGATGCTACGCG----GGTT
AGCTGAATAAGTTCCGCGTCAGTTTCACCCGTCCCGTTCTGCTCTGCCTTTGCCGACTAAAACTATCTCAGGAGT-----
--TGCCACTTCCGTGGCGAAAGGAGGACAAAGAGGCCACTTACGTGGC-AACATATGCACATGTACATACGTGACTGGTG
GCTCGATTACTCTATCTAACCACCCAACCATGAACCATCACGTATGTATGTTGTTGAGTGGACGGTCTAGCTCGATCAGG
TAAGAGAAGATCCTCACGCGAGCATATGTGGCACCATCTAGGAGTTAC------
>chr1D_715
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TATCC
GTGCAGCAGCTCAGCTGCAGGTTTGCAA-----CTTGGCCGGGGAGCGCCCTTTTTTACAAAGTACACTCGCGCAACACC
ACCCTCCATAACA--------ATGGTG-----------CGCGCTCTCTTATATATACTCCACGACCAGAGCAGAGAGT--
--GACAGACA----CGAATTGCAGCTAGCTAGCACAG--GCATCAATC---CAGTTCGAATA-----------CCTTG--
AAACAGTGGCCGGGCGGACTCATCTCTGATCG---ACCGAGC----CGGA----CGGACATCA--------------CAT
-CTCTCTGATTAACTTCATCA-----AC-----CATGGGTCGTCTTGATTCGGAGGCGCCGACGTCGAGCATCATCGCCG
CGGGGCTGACTGCTCTCCACGACCACGCCCACGGACACGGGGGAGGCGCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTC
GACACCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTGCGGCACGTGGGCCGCGGAGCCGCG------GT---CGCCGCCGGCGAGGGCGGGGCGACGGCTCGGGCGGCCT
TCAAC---GGCAGCGGCATCAAGAGGCGCGTGCTGAGGAGCCTCCCCGTGGAAGTGTACGGATCCGGGGAGGTCATCGAC
GACGTGTGCGCCATATGCCTCGGCGAGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGGAGTGCTGCCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCCCACAGCTCGTGTCCGACGTGCAGGCGGCCGGTGATCGAGGACTCTCTCG
CGAAGGGCGGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1B_723
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CAGCTGCCTAGCTGCAGGG-TGCAACTTGGCTCGGCCGGGGAGCGCCTTTTTA--CAGAGTACACTCACGCAACACC
ACCCCACAGAACA--------ATGGTGAGCACGGCGACCGCGCCCTCTTATATATACTCCCCGAACGGAGCAGAGAGT--
--TACAGACGAACACGAATAGCAGCTT----GCTTAGCAGCATCAATC---GACTTCGAATA-----------GTTTG--
AAACATCCAGCGTCG----------------------CGTCT----CGCG----TGGACGTCTCTCTC-----TCTCTCT
-CTCTCTGATCAACTTCATCAACGGTAC-----CATGGGTCGCCCTGATTCGGAGGCGCCGACGTCGAGCATC---GCCG
CGGGGCTGGCTGCTCTCCAAGACCACGCCGAAGGACACGGGGTAGGCGCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTC
GACACCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCCTTAGCGCGGTG
CGCGCTCCGGTACGTGGGGCGCGGAGCCGCG------GT---CGCAGCCGGCCAGGCCGGGACGACGGCGCGGGTGGCCT
GCAGC---GGCAGCGGCATCAGGAGGCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGAC
GACGTGTGCGCCATATGCCTCGGCGAGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCCCACAGCTCGTGTCCGACGTGCAGGCAGCCGGTGATCGAGGGCTCTCCCG
CGAAGGGCGGCGACGGCGGCAGTGGCGGTAGCCAGTGCCCCGCAGAGAACGACACGATCACTGTGGTCATCGTGTGAGTT
CATT----GTGCAACGAAGCATTGCCATTACCGGTACCAGTTACCATGACAAGGGAGCACAGTTCTGCATGCGGAAGCTC
TTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1A_739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GG-CGCAA-----CTTGGCCGGGAAGCGCCCTTTTT--CAAAGTACACGCTC--------
--CCCCACAAACA--------ATGGTGCACACCGGGGCCGCGTCCGCTTATATATACCCCATGGCCAGAGCAGAGTGT--
--GACAGACA----CGAATAGCAGCTC----CCACAG--GCATCAATCATCCAGTTCCAATA-----------GCTCG--
GAGCAGCGGCCGGGCGAACTCATCTCCGATCG---ATCAAGC----TGGG----CGGGCATCA---TCATCGATCTCTCT
CCTCTCTGATTAACTTGATCA-----AC-----CATGGGCCGTCCTGACTCGGAGGCGCCGACGTCGAGCATCGCCGCCG
CGGGGCTGGCTGCTCTCCGCGACCACGCCCACGGAAAAGGCGATGCCGCGGCGCCGCCGGCGGCGCCGGACTCGCCCTTC
GACACCAACGTGGTGATCATCCTCGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGCTCCGCG------G---------CCGGCGAGGGCGGGGCAACGGCGCGGGGTGCCG
GCCGCGGAGGCAGCGGCATCAAGAGGCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGGTCCGGGGAGGTGATCGAC
GACGTGTGCGCCATCTGCCTCGGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCGCGCACGGGTTCCA
CGTCCGCTGCGTCGACGCCTGGCTCGTGTCCCACGGCTCCTGCCCCACCTGCCGGCAGCCGGTCATCGAGGGCGCGCCCG
CCAAGGGCGCCAGCGGCGGAGCTGCCCAAAGCCAGCGGCCCGCGAGCACGGAAATGATCGCCGTGGTCATCGTGTGACTT
CATCCGTCGCGCAACGAAAGCATGCCATTGCCTGCCGG-CGCAACACGAGAAAGCAGCACAGCTCTGCATGCCCAGGTCC
TTGTGGCACCATTTTCCGGCATCGATTGCCATGCCTGCC------TGCCAGGCGCTGCTTGCTAGTGGATCAACGTATGA
TCGAACTGCCCAACCGCACATGTAAATATTAGACGGCGCAGAACACTGTACTGGCAATCCGACACACCACGAGTGAAAAG
TTTTGCTGGATCAATTTGCCCCCGTGTCCCCCTTTCCGCCGCCGCCGCCGGCATGGGCGCCCGTCCCCTTTTCGGCGCGC
CGGGGTCGCAGACGTCGGCGTCAGCGTCGGCCGGTTGCCCGGCGCCAGGACGCGACACGTCGACGCGTGACCGTGTGCCG
ACCTGCGGATCCGCGCGCGAACCAACCACCCGCGCAATCGCAACGTGCGTGCGT----CCCAACGGCGTGCCTTAGCCCG
CACGCGACGGCGATCGATCGGCGCACGCAACCGCCGGGATAACTCCGTCGCGCCAACCCCGCCCCCGCGATCGCCACGTC
CAGCGGCACGGACGCCAGCTGCGTCCGTCGTCGTCGTCACCCGGTGCGCACGCGATTCAGGCATCCTCGCGTGCA-CTAG
T--GGGGGTGGCCCCTGACGCCGACGGGTCGAGGACGACTGACGTTCAGTTCAACCGCCTGGATGCTACGCGCGCGGGTT
AGCTGAATAAGTTCCCCGTCAGTTTCACCCGTCCCGCTCTGCTCTGCCTTTGCCGACTAAAACTATCTCGGGAGT-----
--TACCACTTCCGTGGCGGAAGGAGGAAAAAGAGGCCACCTCCGTGGCAAACATATGCACATGTGCATGCGTGATTGGTG
GCTCGATTACTCTATCGAACCACCCAACCATGAATCATCACGTATACGTCGTGTTGATTGGACGGTCTAGCTCGATCGGG
TAAGATAAGATCCTCGCGCGAGCGTATGTGGCACCGTCTAGGAGTTACCGCGTT
>chr5D_739
--------------------------------------------------------------------------------
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--------------------GG-CGCAA-----CTTGGCTGGGGAGCGCCCTTTTA--CAAAGTACACTCGCA-------
-----CCAGAACA--------ATGGTGGGCACCTCGATCGCGCCCTCCTATATATACCCCACGGACAGAGCAGAGAAC--
--GACAGACATACAGAGA---CAGACA----ACACAG--CCACCAATC---CAGTTCGAATATACTCCTACTAGCTTG--
AAGCATCGACCGATCGA--------------------CGTGC----CGGG----TGGACATCTCTTGGATTACA------
----------TAACTTCATCA-----AC-----CATGGGTCGTCCCGATTCCGAGGCGCCGACGTCCAGCGTC---GCCG
CGGGGCTGGCTGC------------CGCCCTCGGAGGCAGGGAAGGCGCGGCGGCGCCAGCGGGGGCAGACTCGGCGTTC
GAAACCAACGTGGTGATCATCTTGGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCCACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGGGCCGCGGCCGCTGT---CGCTGCCGGCGAGGGCAGGGCGTCGGCGCAGGTGGCCT
GCAGC---GGCAGCGGCATCAAGGGGCGCGTCCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGAC
GACGTGTGCGCCATATGCCTGAGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTCCCGCTGTGCGGGCACGGCTTCCA
CGTTCGCTGCGTAGACACGTGGCTGGTGTCCCACGGCTCCTGTCCCACGTGCCGGCGACCGGTGGTCGAGGGCGCGCCCG
CGAAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr1D_821
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------CGCGCTCTCTTATATATACTCCACGACCAAAGCAGAGATT--
--GACAGACA----CGAATAGCAGCTC----GCACAG--GCATCAATC---CAT------TA-----------GCTTG--
AAACAGCGGCCGGACGAACTCATCTCTGATCG---ACATAGCTGGGTGGG----TGGGCATAA---TC-----TCTCTCT
-CTCTCTCATTTACTTCATCA-----AC-----CATGGGCCGTCCTGATTCGGAGGAGCCGACGTCGAGCCT---CGCCG
CGCGGCTGGCTGCTCTCCACGACCACGCCCACGGACATGGGGGAGGAGCGGCGGCGCCGACGAGTGCAGGCTCGGCCTTC
GACACCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTGCGGTACGTGGGGCGCAGAGCCGCG------GT---CGCCGCCGGCGAGGGCGGGGCGACAGCTCAGATGGCCT
GCAGG---GGCAGCGGCATCAAGAGGCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGATCCGGGGAAGTCATCGAC
GACGTGTGCGCCATATGCCTCTGCGAGTTCGTGGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCCCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGTCCACGGGCGCACCCC
CGAAGGGCGGCGACGGCGGCATTGGCCATAACCAGTGTCCCGCGGAGACCGACACGATCACCGTCGTCATCGTGTGAGTT
CATG----GCGCAACGAAGCAT-GCCATTGCCGGTAC-------CACACCAAGGGAGCAGAATTCTGCATGCGCAAGCTC
TTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr1A_821
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGCGCTCTCTTATATATACTCCACGACCAGAGCAGAGAGT--
--GACAGACA----CGAATAGCAGCTA----CCACAG--GCATTAACC---CAT------TA-----------GCTTG--
AAACAGCGGCCGGACGAACTCATCTCCGATCGTCGACAGAGCTGGGTGGG----TGGGCATCA--------------TCT
-CTCTCTCATTTACTTCATCA-----AC-----CATGGGCCGTCCTGATTCGGAGGCGCCGACGTCGAGCAT---CGCCG
CGCGGCTGGCTGCTCTCCACGACCACGCCCACGGACACGGGGGAGGCGCGGCGGCGCCGTCGGGTGCAGGATCGGCCTTC
GACGCCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCGCGCTGCTCTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGCCGCGGGGCCACG------GCAGCCGCCGCCGGCGAGGGCGGGGCCACGGCGCGGGGTGCCT
GCCGCGGAGGCGGCGGCATCAAGAGGCGCGTGATCAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAAGTCATCGAC
GACGTGTGCGCCATATGCCTCGGCGAGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCCCAGTGCGATCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCCCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGACCACGGGCGCACCCC
CGAAGGGCGGCGACGGCGGCATTGGCCATAACCAGTGTCCCGCAGAGACGGACACGATCACCGTGCTCATCGTGTGAGTT
CATA----GCGCAACGAAGCAC-GCCATTGCCGGTACT-----GCACCACAAGGGAGTAGAATTCTGCATGCGCAAGCTC
TTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1B_836
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATACTCCACGACCAGAGCAGAGAGT--
--GACAGACA----CGAACAGCAGCTC----GCACAG--GCATCAATC---CAT------CA-----------GCTTGAA
AAACAGCGCCCGGACGAACTCATCTCTGATCG---ACAGAGC----TGGGTGGGTGGGCATCG--------------TCT
-CTCTCAGATTTACTTCATCA-----AC-----CATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCAT---CGCCG
CGCGGCTGGCTGCTCTCCACGACCACGCCCACAGGCATGGGGGAGGC------------GCGGCGCCGGGCTCGCCCTTC
GACGCCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCACGCTGCTCTTCGCCATCGGGCTCAACTCGTTGGCGCGGTG
GGCGCTGCGGTACGTGGGGCGCGGAGCCGCG------GT---CGCCGCCGGCGAGGGCGGGGCGACGGCTCGGGTGGCCT
GCAGC---GGCAGCGGCATCAAGAGGCGCGTGCTCAGGAGCCTCCCCGTGGAGGTGTACGGATCCGGGGAAGTCATCGAC
GACGTGTGCGCCATATGCCTCGGCGAGTCCGCCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGACACGGGTTCCA
TGTCCGGTGCGTCGACGCATGGCTGGTGTCTCACAGCTCGTGCCCGACGTGCAGGCGGCCGGTGACCACGGGCGCACCCC
CCAAAGGCGGCGACGGCGGCATTGGCCATCACCAGTGTCCGGCGGAGATCGACACGATCACCGTGGTCATCGTGTGAGTT
CATC----GCGCAACGAAGCAT-GCCATTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1D_975
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TCT
-CTCTCTGATTAATTTCATCA-----ACAGTAGCATGGGTCGTCCTGATTCGGAGGCGCCGACGTCGAGCAT---CGCCG
CGGGGCTGGCTGCTCTCCACGACCACGCCCACGGACACGGGGGAGGCGCGGGGGCGCCGACGAGTGCGGGCTCGGCCTTC
GACACCAACGTGGTGATCATCCTTGCCGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGGCGAGGAGCCGCG------GT---CGCCGTCGGCCAGGCCGGGGCGACGGAGCGGGTGGCCT
GCAGC---GGCAGCGGCATCAAGAGGCGCGTGCTGAGGAGCCTCCCCGTGGAGGTGTACGGCTCCGGGGAGGACATCGAC
GACGTGTGCGCCATATGCCTCGGGGAGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCTCACAGCGCGTGTCCGACGTGCAGGCGGCCGGTGATCATGGGCGCTCCCG
CGAAGGGCGGCGACGGCGGCATTGGCGGTAGCCAGTGCCCCGCAGAGAACAACACGATCACAGTGGTCATCGTGTGAGTG
CATC----GTGCAACTAAGCATTGCCATTGCC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr1A_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AC-----CATGGGTCGCCTTGATTCGGAGGCGCCGACGTCGAGCAT---CGCCG
CGGGGCTAGCTGCTCTCCAAGACCACGCCGATGGACACGGGGGAGGCGCGGCGGCGCCGTCGGGTCCAGGCTCGGCCTTC
GACACCAACGTGGTGATCATCCTCGCCGCGCTCTTCTTCGCTCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTG
CGCGCTCCGGTACGTGGGGATTGGAACCGCG------GT---CGCAGCCGGCCAGCCCGGGGCGACGGCGCGGGTGGCCT
GCAGC---GGCGGCGGCATCAAGAGGCGCGTGCTCAGGAGCCTCCCCGTGGAAGTGTACGGCTCCGGGGAGGACATCGAC
GACGTGTGCGCCATATGCCTCGGCGAGTTCGTCGACGGCGAGAAGGTGCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCA
CGTCCGGTGCGTCGACGCATGGCTGGTGTCCCACAGCTCGTGTCCGACGTGCAGGCGGCCGGTGATCGACGGCTCTCCCG
CGAAGGGCGACGACGGCGGCAGCC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>SNPs
SSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------------------
-----S------S------------S---------------------S--------S---S---S--S--S---------
------S-S----SS--------------------------SS--S---S--------------------S---------
------------------------S----S--------------------------------------------S-S---
-----------------------------------------S--SSSSSSSSS---------------------------
-----------------------------------S---------S-------------------------SSSS-----
---------------------S-SS--------------S--------------------------S-------SSS-S-
S--------------------------------------------------------------------------S----
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------------------S--------------------------------S-------------
----------------------------------S-------S-------------------------------------
------------------------------------------------------S-------------------------
---S------------------------S-------SS------S-------------------S----SS---------
---------------------------------------------------------S----------S-----------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-SS-----------------------------------------S---------------
----------------------------------S--------S------------S-----------------------
------------------------S--------------------------------------S----------------
---------------------------------------------------------------------------SSSSS
SS---------------S------S-----S-S-----------------------------------------------
-----------------S--------------------------------S-----------------------------
------------------------------------------------------
>forward_216
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CACCGCTAGGCTCTCTGATG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>reverse_1735
--------------------------------------------------------------------------------
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