>input_sequence_74628
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-------------------------------------------------ATGACTGCCGGCGCCGGGAGCGCGGGCGCGT
TCCGGCGGGCGGTCGACAGGGCGTGCGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCG
GCGTTCGGCGCGGCGGCGGACGCGGAGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGC
CTCGCTGCAGTGGGCGCTCCTCCTCGCGTCGCTGGCCGCGGCGGGGCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCT
CCAAGGTCCTCCTCGTCTGCCTCGGCCTCCTCGCGCCGTTCCCGCGCTTGGCGCTGCTCCGCCGGCTCGTCGCCGCGGCG
TTCGTCGCGCTCGTGCTCGCCGACATCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTCCC
GGTCATCGTGCTCCACGCCTCGTTCCGCGTCCGCGACGACCTCGAGGGGCCCTCCACGGAGAACGGCGAG----------
-----GAGGAGGCGGCGGTCGTGGAGAAGAGGGAGGACGGCGATGCCGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTG
GCGCCACGATCGCCAAAATGA-----------------------------------------------------------
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>chr1D_1_TraesCS1D01G218900
ATCTGACGGCCGGTGCCGGGGGGAGCTCGTAGGGCGGCGCCGCCGTGTGAGGTGAGGTGGCTGGAGCGGACGACGGAAGA
AGGTCGAGCGCAGGGAGATGTGGTGTCACGGGTGCAGGAGAGATGAAGCAAGAAAAAAAGATAAAATACTTGACTCATTG
ACACGTGGCCCGTGGTCTAACTCAGCATGTTGTCCACGCAAGCATGCCACATCAGTCTGACAGGTCGGCTCAACCTGTCA
GTTTTGCTGTTAGAACGAGCTAACGCAATAATCAGTATGTTTTGTTATCCACTTAGCGCAGAAGCGATGGTCTTTTGTAA
TTTTGGACAGAAATGATAGTTTTAGAGTACCCTAACCATAAATATGAAATTTACTCTGCCAAGGGCCACCTCTCTCCGTC
GAGGCTGGACATGACTGCACCAAGTGAGATGCCTCTTCCACACTCATGGAAAGGAAAGGGAGCTCTATGCAGCGGCTAGT
TTATGCTTCAGTCAACGCAAGAAATGCATGCAATAAAA-TTCTTAATAATCCAATTGATAGCTTACGAAACAAATAATTT
CCTTCTGTAAATAGAAGATACGCAAATCTTCTCCGTGTTTTAAAAACAGAAGGAACAGAAGCTGAGTCGTCGTGTATTCG
TACTTGTTCTGTTCAGAAAACAACATCGCAATATATTGCCAAAAAGAAAAGTAG--------GGGAGGATCGTGTTGGTG
CCCCGCGGCCAAACGTTCGGGGAAGAACCAACCATGCCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAAC
GAGTGGAAAAGTCCCGGTTTTTCGCCGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAA
CCCGCGTCTTTGACTCGCTCCGGCCCCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGAGCGGCGA
ATCTCGGCAGGCACCACCGCCCATCAAGCAGCCGCTGCCGAGGCGAGCGATGACTGCCGGCGCCGGGAGCGCGGGCGCGT
TCCGGCGGGCGGTCGACAGGGCGTGCGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCG
GCGTTCGGCGCGGCGGCGGACGCGGAGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGC
CTCGCTGCAGTGGGCGCTCCTCCTCGCGTCGCTGGCCGCGGCGGGGCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCT
CCAAGGTCCTCCTCGTCTGCCTCGGCCTCCTCGCGCCGTTCCCGCGCTTGGCGCTGCTCCGCCGGCTCGTCGCCGCGGCG
TTCGTCGCGCTCGTGCTCGCCGACATCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTCCC
GGTCATCGTGCTCCACGCCTCGTTCCGCGTCCGCGACGACCTCGAGGGGCCCTCCACGGAGAACGGCGAG----------
-----GAGGAGGCGGCGGTCGTGGAGAAGAGGGAGGACGGCGATGCCGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTG
GCGCCACGATCGCCAAAATGACGGACGGTGCGAGCAAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAA
ACTGTCT------CACGATCTTGACTGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTT
TCGAATCGAATCGGCTAATACTCCTATAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGAATGCATCCATT
TCCTTGGTATCTGTTGGACT-----ATCTTTGATCATATATACACTTAGCAGAAAG--------GAATGAAATACATAAT
CAAAATTGGCACTCGGATTTACTGTGAC---AATATACATTTTGAACATTTTGTCAGGTGCATCGATCTGAATGCGAGCT
------TTGCATTCATCTCGACCGCAGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTGGGAGT----
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---------------------------------ACAACTAATATCTCTCTAAAATTAT----------------------
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----------CTAATCTAGCATAGGAATCCCCGAGAAATTTTCTTTTCCTTCTTCTTCCTTTGTGACCGTTTCCACCACG
TGCCGCATTTGTGTTGCTGCGATGGTGATTGCGTGCTTGTTTGCATTTGCTTGTTTGAAACACAAGTTTCTGAATTTAGG
CCGATATATTTAATTTTTGGGTCGGCGATGCAAATATAATACTCCACGTATCAACCGATATAGAACCACACACTAATCTT
TATTTGACCCAATATGTCCACCGGAATAAACCAGTGCGCACGTGACACGGATGTGGTAAAGAAATTGAAAAAAAATGTAT
TTACAAAATCATCATAGCTATAATACCTAGGGGTTTCATCATTTATGCCATTAACTGTGTTAGCGCATGCTAAAAAATGC
CACTAAGCATCATTACTGTTAGCTCAAAACCCGTTTACCATGTTATAATGATCAAAACACCCATGGACCAACATGACAGC
CCCCCTTTATCTCACTACGATAGTGTGGGTCCCACTCAACCCCCAATAGCGTCCTTAATTTCCTCTAAAACTAATCCC
>chr1A_399
TCGTGGCT------------------------------------------------------------------------
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-------GACAAGACTGCACCTGGTGAGAT---TCTTCCAGCCTCATGGAAAGGAAAGGGAGCTTTCTGCAGCGGCTAGT
TTATGCTTCACTCAACGCAAGAAATGCATGTAAT-AAA-TTCTTAATAATTCAATTAATAGCTTACGAAACAAATAATTT
CCTTCTGTAAATAGACGATACGCAAATCTTCTTCA-GTTCTAAAAACAGAAAGAGCAGAAGCTGAGTCGTCGTGCATTCG
TACTCGTTCTGTTCAGAAAACAGCATTGCAATATC--GCCAAAAAGAAAAGTAGGCAAGTAGGGGAGGATCGTGTTGGTG
CCCCGCGGCCAAACGTTCGGGGAAGAGCCAACCATGGCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAAC
GAGTGGAAAAGTCCCGGTTTTTCGCCGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAA
CCCGCGTCTTTGACTCGCTCCGGCCCCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGACCGGCGA
ATCTCGGCAGGCACCACCGCCCAGCAAGCAGCCGCCGTCGAGACTGGCGATGACTGCCGGCGGCGCGAGCGCGGGCGCGG
TCCGGCGGGCGGTCGACAGGGCGTGCGCGGCCGCCAGGGGGGCGCGGCGCGCGCTAGCGCGGTTCGCGCCGCGGCCGTCG
GCGTTCGGCGCGGCGGCCGACGCGGAGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGC
CGCGCTGCAGTGGGCGCTCCTCCTGGCGTCGCTGGCCGCGGCGGGGCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCT
CCAAGGTCCTCCTCGTCTGCCTCGGCCTCCTCGCGCCGTTCCCGCGCTTGGCGCTGCTCCGCCGGCTCGTCGCCGCGGCG
TTCGTCGCGCTCGTGCTCGCCGACCTCGCCGCGGCCGGCGCGGTCGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTCCC
GGTCATCGTGCTCCACGCCTCGTTCCGCGTCCGCGACGACCTCGAGGGGCCTTCCACGGAGAACGGCGAGGAGGAGGAGG
CGGACGAGGAGGCGGCGGTCGTGGAGAAGAGGGAGGACGGCGATACGGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTC
GCGCCACGATCGCCAAAGTGACGGACGGTGCGAGCTAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAA
ACTGTCTCACTCTCACGATCTTGACTGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTT
TCGAATCGAATCGGCTGATACTCCTATAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGGATGCATCTATT
TCCTTAGTATATCTGC--TGGACTAATCTTTGATCATATATACACTTAGCAGAAAG--------GAATGAAATACATAAT
CAAAATTGGCACTCGGATTTACTGTGAC---AT------------ACATTTTGTCA-GTGCATCGATCTGAACACTGAAT
GCGAGCTTGCATTCATCTTGACCGCAGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTACTA------
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---------------------------GTGTAAACAACTAATATCTCTCTAA--TTAT----------------------
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----------CTAATCTAGCATAGGGATCCCCGAGAAGTTTTCT---------------------ACCGTTTCCACCACA
TGGCGCATTTGTGTTGCTGCGATTCTGATTGTGTGCTTGTTTGCATTTGCTTGTTTGAAACACAAGTTTCTGAATTTAGG
CCTTT--------TTTTTTGGTATGCGATGCAAATATAA-----------------------------------------
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>chr1B_474
GGCTAGTC------------------------------------------------------------------------
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TTATGCTTCAGTCAACGCAAGAAATGCATGTAAT-AAAATTCTTAATAATTCAATTAATAGCTTACGAAAGAAATAATTT
CCTTCTGTAAATAGGAGATGCGCAAATCTTCTTCGTGTTCTAAAAACAGAAACAGAAGAAGCTGAGTCGTCGTGTATTCG
TACTCGTTCCGTTCAGAAAAAAGCATTGCAATAT--TGCCAAATAGAAAAGTAGGCAAGTAGGGGAGGATCGTGTTGGTG
CCCCGCGGCCAAACGTTCGGGGAAGAACCAACCATGGCGCACCGACCAGGTCGCTGCCGCAACAAAACCGACGCGGAAAC
GAGTGGAAAAGTCCCGGTTTTTCGCCGTCACGGCGAGGGCGAGGCCCCGCCTTTAACCCCGGGCGCGCCGTTTGTTAAAA
CCCGCGTCTTTGACTCGCTCCGCCCCCCGTCCCGTGCCATCCGGCTCCCTTGAGTCCAAACCCAGCAACCGGAGCGGCGA
ATCTCGGCAGGCACCACCGCCCAGCAAGCAGCCGCCGTCAAGGCCAGCGATGACTGCCGGCGCCGCGAGCGCGGGCGCGG
TCCGGCGGGCGGTCGACAGGGCGTGCGCGGCCGCCAGGGGGGCGCGGCGCGCGCTGGCGCGGTTCGCGCCGCGGCCGTCG
GCGTTCGGCGCGGCGGCGGACGCGGAGGCCGCGGCGGTGCGCGGGGTCCGCAACGCGCGCACGTTCCGGTACCACTACGC
CGCGCTGCAGTGGGCGCTCCTCCTGGCGTCGCTGGCCGCGGCGGGCCACCGGGCGTCGGTGCTCTTCCTCATGGCCGCCT
CCAAGGTCCTCCTCGTCTGCCTCGGCCTCCTCGCGCCGTTCCCGAGATTGGTGCTGCTCCGCCGGCTCGTCGCCGCGGCG
TTCGTCGCGCTCGTGCTCGCCGACATCGCCGCGGCCGGCGCCGTGGCCAACCTCATGGCCGCGCTGGCGGTGGGCGTTCC
GGTCATCGTGCTCCACGCCTCGTTCCGCGTCCGCGATGACCTCGAGGGGCCCTCCACGGAGAACGGCGAGGAGGAGGAGG
CGGATGAGGAGGCGGCGGTCGTGGAGAAGAGGGAGGACGGCGATACGGAGGCAGGCCCCACGCGGCGGTCCACGGCGGTC
GCGCCTCGATCACCAAAGTGACGGGCGGTGCGAGCTAGGCGGCTGGCTGATCGATCAGACGATTCAGAGTCTTGGTCAAA
ACTGTCTA------ACGATCTTGACTGCTTCTTGATATAGATCAATCATACTACTGGTACTCGTATTTTTGGCTGAAGTT
TCGAATCGAATCGGCTAATACTCCTACAACAACTGGACGATGAATGAGGATTACGTAGACCCGATGTGGATGCATCCATT
TCCTTAGTGTATCTATATTGGACTAATCTTTGATCATATATACACTTAGCAGAAAGCCAGAAAAGAATGAAATACATAAT
CAAAATTGGCACTCGGATTTACTGTGACAATAT------------ACATTTTGTCA-CTGCATCGATCTGAACACTGGAT
GCGAGCTTGCATTCATCTTGACCGCAGCGACGGGTGAACGGCTCTGTTCGCACCGCCAGTCCTGCAATGTACTCCCTCCG
TCCGGAATTACTTGTCGCAAAAATAGATAGAAATGGATGTAACTAGAACTAAAATATGTCTAGATACATCCACTCCCACG
AGAAGTAATTCCGGACGGAGGGAGTAGGTGTAAACAACTATTATCTCTCTAAAATTATCTAAGGGCGTGTATAATGATTG
ATAAGATAGTCTTATCTTAAGTCTTGCATGTGATTTAGAGATGACAAAAAAAATTGTCTACAATGGATCCTCTCTTAGCC
TTTTCTTGAATAACTAGCAATTTCTAAAAATATGATGAGACATATTGTGTTAAAAGATCACCTCTTGCCTTCTCTTAAAT
AAAAGAAGACAAGCCTTTTCTTATGAGTTCTCTCTCCTCCACCTCATCATCTATCCTACATGGCACGGGAAAATATCAGG
TGCTCCCGTGCGAGCTCAGCCGTTGGATCTTAGATCCAAGAGCTCCTGTGAAATGATGAACATTTTTGCAAAAAAGCCCT
CATAAAATCTAAAAAATGCGCACAAGTACAGCAGCTACAGCAGCTCCCTGTTTGCCGTTGGATCTGAGATCCAAGGGCCC
AGAAGTCCGTATCATGGGAGCACATATGCTCCCGTATCACAGGATACTCTCCCTACGTGGCACTCCTAAGATAACACCAT
TGTACATGCCCTAATCTAGCATAGGGATCCCCGAGAAGTTTTCTTTTCCTTCTTTTTCCTTTGTGACCGTCTCCACCACG
TGGCGCATTTGTGTTGCTGCGATTGTGATTGTG--------------TGCTTGTTTGAAACACAAGTTTCTGAATTTAGG
CTGATATATTAGTTTTTGGGT-----------------------------------------------------------
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>SNPs
SS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----S---------SS-------SSS-------SS----------------------S-S-------------
------------------------------S---S---------------S-----S-----------------------
--------------------------------S------S-----------S--S-------------------------
----S-----------------S---S-------SS--------------------------------------------
------------------------------------S-------------------------------------------
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-----------------------S-----------S-S------S--------------------S-------------S
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-S----------------------S-------------------------------------------------------
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--------------------------------------------S-S--------------------------------S
-----------------S-----------------S--------------------------------------------
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--------------------------------------------------------------------S-----------
-----S----S-S-SSSSSS------------------------------------------------------------
--------------------------------SSSSSSSSSSSSS-----------S---------------SS-SS-S-
------------------S---------------------------------------------------SSS-SS----
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-------------------------S-----------S----------------S-------------------------
--S--------------------S-------S------------------------------------------------
----------SSS---------SS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_128
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----------------------------CGGGTGCAGGAGAGATGAAG--------------------------------
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>reverse_1977
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--------------------------------------------------------GGTGCATCGATCTGAATGCG----
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