>input_sequence_74624
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-------------------------------ATGCCAGGTGAGTCTCCATGCACAAATCAAGCTTACTTTTCTCGAATAC
GTGAAGATACTGAGGATGATCATGCTGACCTAATCTGGAGGTCCAGAGCTCCGCACAAGATCAAACTGTTCGCCTGGCTG
CTGTTTCGCGGCCGACTAAACACCCGTGCAAACCTGTCCTTCAAACACATGGATGATGCTGCCAGCTGCCCACGATATGC
TGGCCCCTCTGAAGACACGACTCATCTGTTCATTGCTTGTACGCGGTTTCTGCAGATTTGGGGCCAACTAGGCCTTTCCA
CTACTCCCAGGTTCCAGGATCTATGGTTGGTCCACCCCCCGCAGCAGCTAGACAGCATGGTCTGGCCGGAAGTGCTACTC
GTCGTTCACTGGAAGATTTGGGACTCCCGAAACGCTGCTGTCTTCCGTTTTGAAGATCACTCTCCTCGTACTACCATTCA
GAACATTGTAAGTGACCTTGAGTTATTCTCGCATCGCTTTAGAGATCCTGC--------TAGCTGCCAGGTCTTGGCTTG
GTTATCTTACCAC---GCTTGCCGTGCCCTTGTAATCTGTAATCTACCACTGCTTGGCCCAATTTGGCCACTTGAGTAA-
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>chr1A_1_TraesCS1A01G225400
ATTCGGAATTCCTTTGTTCAATCCAAAGCTGTGTGAAAGAATATGTGAAAGGGTCGTCAACTCAAATATGCTTCAGAAAG
ATGATCTCACCGAACACTATGAGTCTATGCAGACAGTGAGGAAGAGGTTGCGCGAACTTTGCACTGAGTACCAAGCAACC
GGTCCAACAGCAAGGCTATTAAATCAGCGGGGAGGCTCGAGGAACTCTCCGCGCCAACTCCAACTCATGAACATTGTGAG
TGGAAGATGGAGTCCATTCCATGATCCATCATCGCCTACCCAAGAAGGGACGTCACCGGGTGAACATGTCAGGCTGAAGC
TCGGTAGACGGCAGAAGTGCTTTACTGAAGTTCTGAGCTTTGATGGGAGCATCCTCAGGTATTTTCCAAAGAAACTTGAC
AACAACATGGAACTTGTGTTATGTAGTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGATCACTACTTTAGTTATCTA
A--------------ACACTCTTATATTAGTTTATA--------------------------------------------
-------------GAGGGAGTAGTTAATTAACAATGCTACTGTTGTAGCCCTAATTTTGTCGACGGCTCATCGCCATGTG
CTCGATTTCTGATAGGTCCCACGCACTCACTCCCGTGTATGAGGCTGCTACAAGATCTGGCACTGAAGATCAACCATCCC
CTTCTCCAAAAACTGATTCAGAAGATTCCGATACCAAGGATGTGGTCTTACCAGGAGTCAATCTCATATTTGATGGCGCT
CAGCTGCACCCGTTCGACATTGGCGCTTGCCTCCACGCCCGCCAACCCTTGTCATTGATAGCTGAGGCGTCGGCCGCGTC
ATTGGCCATGAAATGACTGATATGCATCTCAGCACGTTGCCATCACAATTTTTGTTCTGTTTAATCTATGTGCGGAATTG
ATTATTGTGTAGGACGACTCTCAGAATCAGGCTTTTTTAAGAAAAAGTTTTGTTATGCCAGGGTAGTTTTTCCTTCTCTA
GATGACAGGCACTTTTACCAACAGGGGATGAATGCCAGGTGAGTCTCCATGCACAAATCAAGCTTACTTTTCTCGAATAC
GTGAAGATACTGAGGATGATCATGCTGACCTAATCTGGAGGTCCAGAGCTCCGCACAAGATCAAACTGTTCGCCTGGCTG
CTGTTTCGCGGCCGACTAAACACCCGTGCAAACCTGTCCTTCAAACACATGGATGATGCTGCCAGCTGCCCACGATATGC
TGGCCCCTCTGAAGACACGACTCATCTGTTCATTGCTTGTACGCGGTTTCTGCAGATTTGGGGCCAACTAGGCCTTTCCA
CTACTCCCAGGTTCCAGGATCTATGGTTGGTCCACCCCCCGCAGCAGCTAGACAGCATGGTCTGGCCGGAAGTGCTACTC
GTCGTTCACTGGAAGATTTGGGACTCCCGAAACGCTGCTGTCTTCCGTTTTGAAGATCACTCTCCTCGTACTACCATTCA
GAACATTGTAAGTGACCTTGAGTTATTCTCGCATCGCTTTAGAGATCCTGC--------TAGCTGCCAGGTCTTGGCTTG
GTTATCTTACCAC---GCTTGCCGTGCCCTTGTAATCTGTAATCTACCACTGCTTGGCCCAATTTGGCCACTTGAGTAAT
ATATATAGATGGGGACTCCTCCGG----TGATTCCTCAAAAAAAAAAAAAAAACTGCACGAGTGTGCGTACTTTATATTA
TAGAAGAGAGAGGGGGTAAAGAGCCCCTCCATTTCAGTCAGCATATTAGAATTCTCTGAAGTCAAATTTCATAAAGTTTA
ACCGTATTTATATAAAAAAATATCAACATCTGCCATGCTAAAGTTATATAATATGAAACTTTAAGTCATGACACATCTAG
TGTATTGATTTTTAGGTTGTGAATGTTGACACTTTTTTCTACAAAGCTGGTCAAACTTTACGAGGCTTAACTTCAGTCAA
ATCTTATATGCAAACTAAAAAGGACCGGAGGGAGTACATATATACACCCAACTTCACGCGTCCAGTATACACGCTGCTAA
CTTCTCACGTCACTACCTACTGAAAAGAAGTCCACATCACTCCCTGAGGTTTCAGAAACCGACTAATCCACCCCCTCATC
TTTAAAACTGGTTAATTAATCCCCCGAAAGCTCTAATACCGGCCAAATCACCCCCTAATCCCAATTCGGGTGGTATTCGC
CGGTGGTTTTGCTTGCGTGGCT---CTCCACTATTGCCACGTCGGCTTGGTAT-GGGGCGCGAGGCGATATGAGCACGGG
CCGCTGGTTGTT--------------------------------------------------------------------
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------------------------------------------------------------------------CTTGGTTC
ATCCAATCCCCAATCC------------TTCATCTCTTCCTCCTCCCCTGTTCGTCGCCATGCCCACCCGGCTGAAGCTA
AGATGTGCCTTGCTCTCTGATTCCTCTCCTTCCCTGCTCGCCGCCAGGGCGGCCCCTCTGCTCGCCGCCATAGCCGCCCA
CCTCCATAGTTCCTCCCCCCTCCCCGATCCCTCATTCTCCCATGACCTGGAGGCGCCCTGAACAAGGACCGCCCTCGCCA
TGGCTGAACGGTGTAGCACAGTCTCATCTTGGAGTTC-CTGTTTGATGTACATTGTGACTTCGTGAGTATTAATTTGGGA
CAGTACAAGTGCAGATATACTGAACTTTAAGCCTTTTCCT
>chr1D_1
ATTCGGAATTCCTTTGTTCAATCCAAAGCTGTGTGAAAGAATATGTGAAAGGGTCGTCAACTCAAATATGCTTCAGAAAG
ATGATCTCACCGAACACTATGAGTCTATGCAGACGGTGAGGAAGAGGTTGCGCGAACTTTGCACTGAGTACCAAGCAACC
GGTCCAACAGCAAGGCTATTAAATCAGCGGGGAGGCTCGAAGAACTCTCCGCGCCAACTCCAACTCATAAACATTGTGAG
TGGAAGATGGAGTCCATTCCATGATCCATCATCGCCTACCCAAGAAGGGACGTCACCCGGTGAACACGTCAGGCTGAAGC
TCGGAAGACGGCAGAAGTGCTTTACTGAAGTTCTGAGCTTTGATGGGAGCATCCTCAGGTATTTTCCAACGAAACTTGAC
AACAACATGGAACTTGTGTTATGTAGT-----------------------------------------------------
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------------------------TAATTAACAATGGTACTGTTGCAGCCCTAATTTTGTCGACGGCTCATCGCCATGTG
CTTGATTTCTGATAGGTCCCACGCACTCACTCCCGTGTATGAGGCTGCTACAAGATCTGTCACTGAAGATCAACCATCCC
CTTCTCCGAAAACTGATTCAGAAGATTCCGATACCAAGGATGTGGTCTTACCAGGAGTCAATCTCATATTTGATGGCGCT
GAGCTGCACCCATTCGACATTGGCGCTTGCCTCCACGCCCGCCAACCCTTGTCATTGATAGCTGAGGCGTCGGCCGCGTC
ATTGGCCATGAAATGACTGATATGCATCTCAGCACGTTGCCATCACAAATTTTGTTCTGTTTAATCTATGCGCGGAATTG
ATTATTGTGTAGGACGACTCTCAGAATCAGGCTTTTTTAAGAGAAGATTTTGTTATGCCAGGGTAGTTTTTCCTTCTCTA
GATGACAGACACTTTTTCCAACAGGGGATGAATGCCAGGTGAGTCTCCATGCACGAATCAATCTTACTTT----------
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>chr1B_1
ATTCGGAATTCCTTTGTTCAATCCAAAGCTGTGCGAAAGAATATGTGAAAGGGTCGTTGACTCAAATATGCTTCAGAAAG
ATGATCTCACCGAACACTATGAGTCTATGCAGACGGTGAGGAAGAGGTTGCGCGAACTTTGCACCGAGTACCAAGCAACC
GGTCCAACAGCAAGGCTATTAAATCAGCGGGGAGGCTCGAAGAACTCTCCGCGCCAACTCCAACTCATGAATATTGTGAG
TGGAAGATGGAGTCCATTCCATGATCCATCATCGCCTACCCAAGGAGGGACGTCACCAGGTGAACATGTCAGGCTGAAGC
TTGGAAGACGGCAGAAGTGCTTTACTGAAGTTCTGAGCTTTGATGGGAGCATCCTCAGGTATTTTCCAAAGAA-------
------ATGGAACTTGTGTTATGTA---CTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTTAAGACTACAGTGC
AAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATATGGTAGTCCATTTGAAATCTCTAAAAAGACAA
ATATTTAAGAACGGAGGGAGTAGTTAGTTAACAATGCTACTGTTGTAGCCCTAATTTTGTCGACGACTCATCACCATGTG
CTTGATTTCTGATAGGTCCCACGCACTCACTCCTGTGTATGAGGCTGCTACAAGATCTGTCACTGAAGATCAACCATCCC
CTTCTCCGAAAACTGATTCAGAAGATTCTGATACCAAGGATGTGGTCTTACCAGGAGTCAATCTCATATTTGATGGCGCT
GAGCTGCACCCGTTCGACATTGGCGCTTGCCTCCACGCCCGCCAACCCTTGTCATTGATAGCTGAGGCGTCGGCGGCGTC
ATTGGCCATGAAATGACTGATATGCATCTCAGCACGTTGCCATCACAAATTTTGTTCTGTTTAATCTATGTGCGGAATTG
ATTATTGTGTAGGACGACTCTCAGAATCAGGCTTTTTTAAGAGAAGATTTTGTTATGCCAGGGTAGTTTTTCCTTCTCTA
GATGACAGACACTTTTCCCAACAGGGGATGAATGCCAGGCGAGTCTCCATGCACAAATCAATCTTACTTT----------
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>chr1B_1052
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--GAAGATACTGAGGATGATCATGCTGACCTAATCTGCAGATCCAGGGCGCCGCATAAACTCAAACTGTTTGCTTGGCTT
CTCTTCAGAGGACGCCTAAATACTCGAGCAAATCTGTCGTTCAAACATATGACTGATTCTGCAAGCTGTCCTCGATGTGC
TGGCTCCTCTGAAGACACTACTCATCTGTTCATTGCCTGCTCGCGGGCCATGCAGATCTGGGTGCACCTAGGCCTCTCCG
CTACCCCCAGGTTCCAAGATCTCTGGCTGGTCACCCTTCCCCAGCAGCTTGACGGCAGGGTGTGGCCGGAGGTGCTTCTT
GTCGTGTTGTGGAGGGTTTGGCACTCTCGTAACGCTGCTGTTTTTCGCTCTGAAGACCACTCTTCTCGCACTACCATTCA
GAACATTGTAAATGACTTTGAGCTCTTCTCACACCGTCTCAGGGACCATGCTGACAAGGTAGCTGCCACGGCTTGGCTAT
GCTACCTTACCACACGGCTTGTCGTGCTCTTGTAATCTGTGACTGT-CACTGCTCGGCCT--TTTGGCCTCTTGAGTAAT
ATATTCAGGTGGGGATCCTCCCCCCTCCTGATTCCTCAAAAAAAA-----------------------------------
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>chr1A_2018
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-----------------------AAAGAAGTCCACATCACCCCCCGGGGATTCAGAAACCGACTAATCCACCCCCTCAAC
TTTAAAACCGGTTAATTAACCCCCCGAGAGCTCTAATACCGGTCAAATCACCCCCTAATCCCAATTCAGGTGGTATTGGC
TGGTGGTTTTGCTTGCGTGGCT---CT---CTATTGCCACGTCGGCTTGGTT-GGGGGCGCTAGGCCATATGAGCACGGG
CCGCTGGTTGTT--------------------------------------------------------------------
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------------------------------------------------------------------------CTTAGTTC
ATCCAATCCCCAATCC------------TTCATCTCTTCCTCCTCCCCTGTTCGTCGCCATGCCCACCTAGCTGAAGCTA
C-ATGTACCTTGTTCTCGGGTTCCTCTCC---CCTGCTCGCAGCCATGGCCGACCCCCTCGTAGCACTCTGAAGAACTCT
GAAGAGCCCCCCCGGC---------------------------GACCTGGAGGCGCCCTGAACAAGGACCGCCCTTGCCA
TGGCTGAACAGCACAGCGCAGTCTCATATTGGAGTTCCCTGTTTGATGCACA--------TCGTGAGTATTA-----GGA
CAGTACAGGTACAGATATACTGAACTTTAAGCTTTTC---
>chr2A_2018
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-----------------------AAAGAAGTCCACATCACCCCCCGGGGATTCAGAAATCGACTAATCCACCCCCTCAAC
TTTAAAACCGGTTAATTAACCCCCCGAGAGCTCTAATACCGGTCAAATCACCCCCTAATCCCAATTCAGGTGGTATTGGC
TGGTGGTTTTGCTTGCGTGGCT---CT---CTATTGCCACGTCGGCTTGGTT-GGGG-CGCTAGGCCATATGAGCACGGG
CCGCTGGTTGTT--------------------------------------------------------------------
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------------------------------------------------------------------------CTTAGTTC
ATCCAATCCCCAATCC------------TTCATCTGTTCCTCCTCCCCTGTTCGTCGCCATGCCCACCCAGCTGAAGCTA
C-ATGTACCTTGTTCTCGGGTTCCTCTCC---CCTGCTCGCAGCCATGGCCGACCCCCTCGTAGCACTCTGAAGAACTCT
GAAGAGCCCCCCCGGC---------------------------GACCTGGAGGCGCCCTGAACAAGGACCGCCCTTGCCA
TGGCTGAACAGCACAACGCAGTCTCATATTGGAGTTCCCTGTTTGATGCACA--------TCGTGAGTATTA-----GGA
CAGTACAGGTACAGATATACTGAACTTTAAGCTTTTC---
>chr3B_2018
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-----------------------AAAGAAGTCCACATCACCCCCTGGGGATTCAAAAACCGACTAATCCACCCCCTCAAC
TTTAAAACCGATTAATTAACCCCCCGAGAGCTCTAATACCGGCCAAATCACCCCCTAATCCCAATTCAGGCGGTATTGGC
TGGTGGTTTTGCTTGTGTGGCTCTCCT---CTATTGCCACGTCGGCTTGGTTGGGGG-TGCTAGGTGATATGAGCACGGG
CCGTTGGCTGTTCTTAGGGCCCGTTCGGAGGTGCTCCACCTCCACGCTTCTCTAGAAACGGGCCAGGAGCTGGCCGAACG
CCACGGCTCCATGGAGCCAGCTTCAGAAGCAGAGGAGGCACGCAGTGCAAATCGGTGGAGCTAGGGAAGTGCTGCTTCGC
TAAATCCAGAAGTAGAAGTTCCTTCAAATTACATCTGGCTGCCATCCCGAAGTGCCAGCCGCAAACCGTTTTCCTCTCTG
AACAAAGCCCAATCATATGGGCCCGACCAAAGTAGCTAGCGCATCTCCTCTCTTGTGCTGCCGAACGCTCCTGGCTCCCC
TGGGAAGCTGGCTAGCCCTGCTCCTTGAAGAAGTTGGCCCCGTTGGGAAGCTGGAGAGCTTCCGAACGGGCCCTTAGTTC
ATCCAATCCCCAATCC------------TTCATCTCTTCCTCCTCCCCTGTTCGTCTCCATGCCCACCCAGCTGAAGCTA
C-ATGTACCTTGTTCTGGGGTTCCTCTCC---------------------------------------------------
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>chr3D_2018
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-----------------------AAAGAAGTCCACATCACCCCCTGTGGTTTTAGAAACCGACTAACCCACCCCCCTAAC
TCTGAAACCAGTTAACTAATCCCCTGAGATATCTAATACCAGCCAAGGCACCCCCTAATCCCAATTAGAGTGGTATCTGC
CGGTGGTTTTGCTTACGTGGCT---CTACAGGGTGGCCACGTCGGCTTGGTACTGTGGCGC-AGGAGATATCAGCACGGG
CCGGCGGCTGTT--------------------------------------------------------------------
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------------------------------------------------------------------------CCTAATTC
ATCCAATCCCCAATCCCCAATCTGATAGTTCATCTCTTCCTCTTGCCTTGTTTGTCGCCATGGCCGCCC-GCTGAAACTA
GTCGTCTTTTTGTTCTCTGGTTCCTCTCCTCCCCTGTTCGCCGCCATGGCCGCCCCTCTCCTC-----------------
---------------------CCCCGATCCCTCATTCTCCCATGACCTGGAAGCTCCCTGAACAAGGACCACCCTCGCCA
TGGATCAATGGAGCAGCGCAATCTCATCTTGGAGTTC-TTGTTCGATGTACA--------TCGTGAGTATTAATT-GGGA
CAGTACAGATGCAGGTATATTGAATTTTAAGCTTTTT---
>chr7B_2047
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----------------------------------------------------CAGAAACCGACTAATCCACCCCCTCAAC
TTTAAAACCGGTTAATTAACCCCCCGAGAGCTCTAATACCGGTCAAATCACCCCCTAATCCCAATTCAGGTGGTATTGGC
TGGTGGTTTTGCTTGCGTGGCT---CT---CTATTGCCACGTCGGCTTGGTTGGGGG-CGCTAGGCCATATGAGCACGGG
CCGCTGGTTGTT--------------------------------------------------------------------
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------------------------------------------------------------------------CTTAGTTC
ATCCAATCCCCAATCC------------TTCATCTCTTCCTCCTCCCCTGTTCGTCCCCATGCCCACCCAGCTGAAGCTA
C-ATGTACCTTGTTCTCGGGTTCCTCTCC---CCTGCTCGCAGCCATGGCCGACCCCCTCGTAGCACTCTGAAGAACTCT
GAAGAGCCCCCCCGGC---------------------------AACCTGGAGGCGCCCTGAACAAGGACCGCCCTTGCCA
TGGCTGAACAGCACAGCGCAGTCTCATATTGGAGTTCCCTGTTTGATGCACA--------TCGTGAGTATTA-----GGA
CAGTACAGGTACAGATATACTGAACTTTAAGCTTTTC---
>SNPs
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----------------------------------S---------------------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------------------S----------------------
----S---------------------------------------------------------------------------
---------------------------S----------SSSSS-----SS-SSSS-S----SSSS-SSSSSSSSS-SSSS
----------------------S-S--SS--S------------------------------------------------
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--S--------------------------------------------------------S--------------------
-------S------------------------------------------------------------------------
S-------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------S--SS---------------------------------
--------S-------S--------------------------------------------S--------SSSSSSSSSS
SS-----------------------------------S--S-----S--S-----S--SS----------S--S-----S
--S--SS-S--S--S-----S--S--S-----S-----S--------S---SS----S----S-----S--S----S---
----S-------------S-----------------S--SS-----SSSS-------S----SS--S--------S---S
----S-----------S-----S---S-----SS--SS--S--------S---S---S---S--------S-----S--S
-----SSSS----S-S-----S----S--S-----------S--S--S-S------S------S----S-----------
-----------S----S-----S-S-----S--S--SS-S--S--S-S--------------------S-S-------SS
-S--S----------------S-----S------------S-SSSSS-------S----SSS-------S----------
----SS--S------SS-SS--SS---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------------S-----S-------------------------------S-
--------S------------------S-------------------------------------------------S--
---------------------------S------------------------S--------S------------------
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---------------------------------------------------------------------------S----
---------------------------------------------------------------------S----------
SS----S-----S------S----------S---------------S---S--------S-----SSS-SS-SSSS-S-S
SSSSSSSSSSS--SS-SSSSS-----------------------------------------------------------
-----------S-S---S----------------------------------SSSSSSSS---------------S----
-------S------------------------S----SSS
>forward_929
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-----------------------------CAGCACGTTGCCATCACAAT-------------------------------
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>reverse_2880
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-------------------------------------------------------------------------------A
CCTCCATAGTTCCTCCCCC-------------------------------------------------------------
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