>input_sequence_74613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ATGATGAGCGGCGGCGGCAGCGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCAC
GCGAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGACGCAGCACGGGCAGGG
GGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCC
AGCTCAGCCGCCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC
GACGACGACGGGCTGGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCT
CGCCGGCGACCTCAGCTGGAAGTAAGTAAT-CTCACACTTGACCACGTACCGGTCTCACTTGTGACATTGATTTCTTTAC
CGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCGAAGAGGATCCGGATCATCCCG
GCGAAGTCGACGACCCGGAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr2D_1_TraesCS2D01G506900
GGGGGCACACGACCACGTACCATACGGGGGGTAGTGGTGT----CATGGCACGGTGTGGGCGCCGTGCATGGCGGCGAGA
TGCATGGCAGC---AGGACCGAGCGACCGCCGGAGGGTCAAACGCCGAGCAAGCCGATCGGCAACCGCGCGCCCTGGCTC
TGCGTGTGTGGTCGTGTGCCCCGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCACCGCGCCCACTATTCAAC
CCTCGCGTGCACGCGCGCG------GGCTCCGCTCCCCGGGTGAG----CACACGAGACACGACCATCTATGCCCGGCAA
CAGCAAGAAGCTGTGGCCGATCTGGGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGATGTGTGTAT
AT--------TTGTGTGTACCCTCGTCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTTGGCGATTTCAT
CAAGCTGTTAGGAGGATTTCCGTGTCACCTCTTTCAATGAGTTCCACTGTTTGCCCTAGACTGTCTAGAAGGCTTCTCCG
ATCCAAGTTGCATTTCCT----CATGCATGGTACGTATCAGAGTTAATCAGCACGTGAAGAATTGTTGTTTTTTGAGAAT
GTGTGGCGTGAAATGCTTGCACGAACTGTTCTAGAGGTTTGTTTAGTTAGGCATGGTGCTGGTGTTGTACACCGGTACAC
GGCAGCCAGCGCTGGTCGCACAGAGTCGTACGTGAAAGCGGTTTTATGTGTAGGAA-TATTTCGGTGAATTATTAAATGA
AGGAAGCTGCAACCCTAGCTAGTAGCTAGATGAGCTCGGTCTCAGTCCCATCATCCATCCATCGCCGGCTTGGCCGCCTA
TAAATCCTCCCGCACTTCGCCGCAAAAG-AACACAACTGAGAATCAAGACCAGTCCA--------------CTAAACCCC
ACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTAAGATCAGTTCCGTTC
CGGCCATGATGAGCGGCGGCGGCAGCGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCAC
GCGAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGACGCAGCACGGGCAGGG
GGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCC
AGCTCAGCCGCCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC
GACGACGACGGGCTGGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCT
CGCCGGCGACCTCAGCTGGAAGTAAGTAAT-CTCACACTTGACCACGTACCGGTCTCACTTGTGACATTGATTTCTTTAC
CGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCGAAGAGGATCCGGATCATCCCG
GCGAAGTCGACGACCCGGAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGTCAGCCGCGCCCGGT---GAA
CCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACTCCACTCTCAGCTCAGCTCAGCTCAACTCCGGCGAAAAAAAAG
ATCAAGTCCGGCCGGCCCGTCG--------TCAACATCTCCCTAAAAATCAATAGAAATCATCGATCCAACCTTTTTTTT
TCATTTTTCGCTGTATCAAAAGTTCAATGTCGCATTGCCACAATGAGAAGAGAAAAGAGAGATCAATTTTCTGTTGGTGC
GAGAGAGAAGAAAGCTAGCTAGCATA----CGATGCGTGTCGTGCGATGCCCACCGGCTAGCTAGCCAGTGTCGCTAACC
GGAACACTGTGCCGGCGTCAAATCGTCGATCCGCCCCGCCCCACCCCCAGCACGCACGGCACGTCCCTCTCGACGTGACT
CAGCGACCGCGCCCCCTCGGCACCAGCCCGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCGGCAGTTG
GGATCTCCCTTTTGAGCGCCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGTG---CGTTACGT
GCGCGGAGGCGCGATCGGACGTACGTGGAGCTGGCGGCCGA----GACGGAATGTCGTGTGCCCGTGCGCGCGGTTCACC
GCCGGACCGATGGATCGGCACGTACGCCACCCCACGTGTGGG----AACGGGTACGCTGCG------TACCACGGCGTCG
GCGTCGCTCGTAAGGAGCGCTGCTGCCTGTTCAATTACTGCGG------CGACGTCGACGTCGATCGTGGCCGGGCGGCC
GGGAGTGTGACACAACGATCCGCGGACGCGCACGCGCACAGTTGATTTGGGACTTGAC---AGGCATGGATCCCGAAGGC
GGCATGACTGTCA-------TCCACAGCATGGAAATTGGTAGACCAGACCAAC-------CTGGCACCATTATTGTTTCC
CGGTAAAATAGGCGGAGATCGGTGGTGTGCGTTGCGTGCAATGCCCATGGATCAACGATCAAGTGGGGAA
>chr2B_1
GGGGGCACACGACCACGTACCATACGGGGG-TAGTGGCCAGTGGCATGACACG--GTGGGCGCCGTGCATAGCGGCGAGA
TGCATGGCAGC---AGGACCGAGCGACCGCCGGAGGGTCAAACGCGGAGCAAGCCGATCGGCAACCGCGCGCCCTGGCTC
TGCGTGTGTGGTCGTGTGCCCCGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCGCCGCTCCCACTATTCAAC
CCTCGCGTGCACGCGCGCG----CGGGCTCCGCTCCCCGGGCGGGCCAAC-------ACACGACCATCTATGCCCAGCAA
CAGCAAGAAGCTGTGGCCGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGATGTGTGTAT
AT--------TTGTGTGTACCCTCGCCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTCGGCGATTTCAT
CAAGCTGTTAGGAGGATTTCCATGTCACCTCTTTCAGTGGGTTTCACTGTTTGCCCTAGACTGTCTAGAAGGCTTC----
-TCCAAGTTGCATTTCCTCATGCATGCATGGTACGTATCAGAGTTAATCACCACGTGTAGAATTATTGTT-TTTCAGAAT
GTGTGGCGTGAAATGCTTGCACGAACTGTTCTAGAGGTTTGTTTAGTTAGGCATGGTGCTGGTGTTGTACAACGGTACAA
GGCAGCCAGCGCTGGTCGCACAAAGTCGTACGTGAAAGCGTTTTCATGTGTAGGAAATATTTCGGTGGATTATTAAATGG
AGGAAGTTGCAACCCTAGCCAGTAGCTA---GAGCTCAGTCTCAGTCCCATCATCCATCCGTCGCCGGCTTGGCCGCCTA
TAAATCCTCCCGCACTTCGCCGCAAAAAAAACACAACTGACCATCCAGACCAGTCCGGGCTGGCCTCCTTCCTAAACCCC
ACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTAAGATCAGTCCCGTTC
CGGCCATGATGAGCGGCGGTGGCAGTGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCAC
GCGAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGGTGCAGCACGGGCAGGG
GGACGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTGACGGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCC
AGCTCAGCTGCCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC
---GACGACGGGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCT
CGCCGGCGACCTCAACTGGAAGTAATCATC---CACACTTGCCCAA----CGGTTTCACTTGTGCCATTGATTTCCTTAC
CGAATTCTCGTGCCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCCAAGAGGATCCGGATCATCCCG
GCAAAGTCGACGACCCGAAGGATCAAGCAATGCGGAGGCGCGGTTAACTAGCTAGCTAGTCAGCCCCGCCCGGTGAAGAA
CCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACCCCACTCTCAGCTCAGCTCAGCTCAACTCCGGCGAAAAAAAAG
ATCAAGTCCGGCCGGCCCGCTGTCGAGAACTCGACGTCTCCCTAAAATCAA---------ATCGATCCAACCTTT---TT
TCATTTTTCGCTGTATCAAAAGTTCAATGTCGCATTGTCACAATGAAAAGAGAAAAGAGA--TCAATTTTCTGTTGGTGC
GAGAGAGAAGAAAGCTAGCTAGCATACGATCGATGCGTGTCGTGCGATGACCACCGGCTA-----CCAGTGTCGCTAACC
GGAGCACTGTGCCGGCGTCAAATCGTCGATCCGCCCCGGCCCACCCCCAGCACGCACGGCACGTCCCTCTCGACGTGACT
CAGCGACCGCGCCCCCT-----------CGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCGGCGGTTG
GGATCTCCCTTTTGAGCGCCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGT---ACGTTACGT
GCGCCGAGGCGCGATCGGACGT----GGAGCTGGCGGTCGA----GACGGAATGTCGTGTGCCCGTGCGCGCGGTTCACC
GCCGGATCGATGGATCGGCACGTACGCCACTCGACGTGTGGGTGGGAAAGGGTACGCTGCGTACCA---------CGTCG
GCGTCGCTCGTAATGAGCGCTGCTGCCTGTTCAATTACTACGGCGGCGACGACGTCGACGTCGATCGTGGCCGGGCTGCC
GGGAGTGTGATACAACGAAACGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGACGACGGCCATGGATCGCAAAGGC
AGCATGACTGTCATCCACACTCCACAGCATGGAAATTGGCAGACCAGACCACC-------CTGGCAACATTATTGTTTCC
CGGTAAAATGGGCGGAGATCGGTGGCGTGCGT--------------------------------------
>chr2A_1
GGGGGCACGCGACCACGTACCATACGGGGG-TAGTGGTGT----CATGGCACG--GCGGGCGCCGTGCATGGCGGCGAGA
TGCATGGCAGCAGCAGGACCGAGCGACCGGCGGAGGGTCAAACGCCGAGCAGGCCGATCGGCAACCA-------------
---------------------CGTCGCTTCTCACGGATCGTGAGAACAAACCCCCGCGTCCGCCGCCCCCACTATTCAAC
CCTCGCGTGCACGCGCGCGCGGCCGGGCTCCGCTCCCCGGGCGAG----C-------ACACGACCATCTATGCCCAGCAA
CAGCACCAAGCTGTGCCCGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCCGCAAGATAACGATGTGTATAT
ATATGTGTGTTTGTGTGTACCGTCGTCGCTCTCCTTTTCTCACCTCGCAAGCAACCCCACTGGCACTTTGGCGATTTCAT
-AAGCTGTTAGGAGGATTTCCATGTCAGCTCTTTCCATGGGTTTCGCTGTTTGTACC-----------------------
-----AGTTGCCCTTCAT----CATGCATGGTACGTATCAGAGTTAACTAACACGTGTAGAACTGGTGCTTC-TGAGAAC
GTGTGGCGCCAAATGCTTGCACGAGCTATTCTACTAGAGGTTCTAGGAATTTGTTAGGCA--------------------
------------TGGTCGCACAAAGTCGTACGTGAAAGCGTTTTTACGTGTAGGAA-TATTTCGGTGAATTGTTAAATGG
AGGAAGTTGCAACCCTAGCTAGTAGCTA---GAGCTCAGTCTCAGTCCCATCATCCATCCATCGCCGGCTTGGCCGCCTA
TAAATCCTCCCGCACTTCGCCGCAAAAG-AACACAACTGACAATCAAGACCAGTCCA--------------CTAAACCCC
ACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACGAAGATCAGTTCCGTTC
CGGCCATGATGAGCGGCGGCGGCAGTGGCAGCGGCAGCGGCAGCGGCGCGGGGCCGAGCAGCTCCAGCTTCGAGCGGCAC
GCCAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGATGCAGCAAGGGCAAGG
GGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACCGTGGTCCTGGACGGGCGCTGCATCTGCCACCGCATCC
ACCTCAGCGGCCACACCGGGTACCGCAGCTTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGACGCGGCCGAGGGCGAC
---GACGACGGGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGAGGACGACCTCCTCCT
CGCCGGCGACCTCAACTGGAAGTAAGTAATCCTCACACTTGACCAC----CGG-TTCACTTGTGACATTGATTTCCTTAC
CGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTGTCGCAGGGACTTCTGCCGTGTGGCGAAGAGGATCCGGATCATCCCG
GCCAAGTCGACGACCCGAAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGCCAGCCACGCCCGGT---GAA
CCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACTCCGCTCTCAGCTCAGCCCAGCTCAACTCCGGCGAAAAAAA-G
ATCAAGCCCGGCCGGCCCGTCGTCAACATCTG--------CCTAAAAATCAGTCGAAATCCTCGATCCAACCTTT---TT
CCATTTTTCGCTGCATCAAAAGTTCAATGTCGCATC-TCACAATGAAAAGAAAAAAGAGAGATCAATTTTCTGTTGGTGC
GAGAGACAAGAAAGCTAGCTAGCATA----GGATGCGTGTCGTCCGATGC---------------CCAGTGTCGCTAACC
GGAGCACTGTGCCGGCGTCAAATCGCCGATCCGA-----------CCCAGCACGCACGGCACGTCGCTCTCGACGTGACT
CAGCGACCGCGCCCCCT-----------CGCCGTGTGTTTTTATCGCGAAAGCTCAGCCCG-----------GGCGGTTG
GGATCTCCCTTTTGAGCGCCACGTCGTTGAAGTGCGAACAGTGATGCGGATGCGCGTAGCCGTCGCCGGGCACGTTACGT
GCGCCGAGGCGCGATCGGACGTACGTGGAGCTGGCGGCCGGCCGGGACGGAATGTCGTGCGCCCGTGCGCGCGGTTCACC
GCCGGATCGATGGATCGGCACGTACGCCACTCCACGTGTGGGTGGGAGCACGTACGCTACGTACGATTACTACGGCGTCG
GCGTCGCTCGTAATGAGCGCTGCTGCCTGTTCAATTACTGCGGCGGCGACGACGGCGACGTCGATCGTGGCCGGGCGGCC
GGGAGTGTGACACAACGAGCCGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGAT---GGCCATGGATCGCCGAGGC
AGCATGACTGTCATCCACACTCCACAGCATGGAAATTGGTAGACCAGATCGACCACCCTGCTGGCACCATTATTGCTTCC
CGGTAAAACGGGCGGAGATCGGTGGTGTGCGTTGCGTGCA-TGCCCTTGGATCAACGATCATGTGGGGAA
>SNPs
------------------------------S----------------------SS-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S----S-------------
-----------------------------------------S--------SSSSSSS------------------S----
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-----------------S---S--------------------------------SSSS
S-------------------------------------------------S------S----------------------
-----------------------------------------------------------------------S-------S
----------------------S-----------------S--------------------------------------S
------S---------------------SSS------S------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
SSS-----------S-----------------------------------------------------------------
--------------S-------------------------------SSSS----S--------------------S----
--------------------------------------------------------------------------------
--S--------------S-----------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------S--S---------------S-S---------------------SSS--
-------------------------------------S--------S---------------------------------
------------------------------------------------------------SSSSS---------------
---S----------------------------------S-----------------------------------------
-----------------SSSSSSSSSSS-----------------------------------------------S----
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
------S-----------------------S---------------------------------------S---------
-------------S------------------------------------------------------------------
------------------S----------------------------S-S-----------S-S--------S-S-----
S-------------------------------------------------------------------------------
---------S------------------------------S-----S--------------S--------
>forward_761
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGAGTCGTACGTGAAAGCGG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2107
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCCGCCGTGTGTTTTTATCG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
