>input_sequence_74587
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----------------------------------------------------CCATCTGAAACCGAAAACCAAAAGAAAA
CAAAGGGAGAGCAAACAAGGCGAGACGGAAGTGAAGGCTAGAATCGTCTCCGTTCATCCGATCCTGATCAGATGGCCCGG
GTTGCGTCCAGCTGTGCCACCCTCGTGGCGCAAAGGTCCTCCC-GAAACTTTGCAAACGTACAGATCATATCATTTCGAT
CCAACCCGAGGTTGAACTGATACGC-GTGACAATGTATGTATGGTGCAGGAGGGGATATTCCTCCGCGATAACCGCCATC
GGAGTGTCCGCGAAGAAGGTTGAGGAGAAGGCGGTGAAGCTGGGCACGGCGGCGACGGAGGACACCACGGAGGACAAGAC
GGCGTTCTGGAAGCCGGACCCCAAGACCGGCGACTACCGGCCCATGACCGGCACCAAAGAAGTGGATCCGGCCGACCTGC
GCGCCGAGATGCTCAACCAGAGGTTGCTGCAGCAGCAGTGATGCGCGTGCTGCAAACACGCTGCCGGCCCA--GGCTCAT
ACCGCCATGTACAGCAAAACGTTGACGGGCGTGCTAAACTATATTTACTAGGCGCCATGTCGGACAACGACTTGTCGGGA
AATTGCTTCCTGTAT-----------------------------------------------------------------
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---------------------------------------------------------------------
>chr1A_1_TraesCS1A01G230800
CCGAGCTCCGCCGTATGTAGACTGTCGTTACCGAGCACATCCATGCTTGCTCTTTGCCGCCAAATGCCTCCCCGTCGACC
GGATCGACGCATCCGGTACGCCACAGCACCGCGATGTACGTCCACGCCCACCCCACGCTCGGCCTTGCATTGTTGTTCGT
GAAATCACCTCTGAGACAAGTTTCGACAACAACGACGTTGTTGCGGAACGGCGACAACGAACGACGACTATGCTAGTGCG
CGATACGGCTGGACATGCTTTTGCAATTTTTACAACAAGAGTCTTGTTACAGAAAATTAAAAAAAAAAGAGGTTGTGCAA
CAGGAGTTTTGTTGCAGAAAATTAGAGAAGAAAAGGCTTTGCAACAAAGACCTTGTTGCAGAAATTAAAGAAGAAGAAAT
TTTGTAACAAAAGCATTGTTGCAAAAATT----AGAAACTGATCGACTCGTACATATCCAATGGGACGGCTCACGGCCCG
GCCGATCTTTTAAAAGGATCAGCCGG-GGACGCGTAGCAGGCCCAAAAAACAAAAGAGCAAAATGAAAAAACTGGGTGAC
GCTCCGGTTCGCTGAGGGCGTATCGGGAGGGGAGGACGTGCGCGCTGGCTCGTTTGCCAGCGCGTCACCCAGCACATTTG
TGCAAACTCTCAGCAACACGCAGCAAACGTCATCCGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCCCAGCAA
CACGCAGCACATGGAAGATTGACAGATGCCGTGAGCCTTGTCACGCTCCATGATGCATCACTCGTACCCAAGATGAT--C
GATAT-----AGTCACAGCTCACAAGGCTAACCATAATTTTGTCCGTACATAATGAACGGATGTCAAGAAACATGTGTTC
CTACATGTGGTGGACAGAGAGGCTGCCTCCCGTTTTCACCTCCGACATGTTCTAAGAGCCATACATCCTCATTGCTCCTT
GTTTGGCTCCTTCCCATAATAACCTGGCAATGGCATTTTCTGTTCCTCTGTCCCATCTGAAACCGAAAACCAAAAGAAAA
CAAAGGGAGAGCAAACAAGGCGAGACGGAAGTGAAGGCTAGAATCGTCTCCGTTCATCCGATCCTGATCAGATGGCCCGG
GTTGCGTCCAGCTGTGCCACCCTCGTGGCGCAAAGGTCCTCCC-GAAACTTTGCAAACGTACAGATCATATCATTTCGAT
CCAACCCGAGGTTGAACTGATACGC-GTGACAATGTATGTATGGTGCAGGAGGGGATATTCCTCCGCGATAACCGCCATC
GGAGTGTCCGCGAAGAAGGTTGAGGAGAAGGCGGTGAAGCTGGGCACGGCGGCGACGGAGGACACCACGGAGGACAAGAC
GGCGTTCTGGAAGCCGGACCCCAAGACCGGCGACTACCGGCCCATGACCGGCACCAAAGAAGTGGATCCGGCCGACCTGC
GCGCCGAGATGCTCAACCAGAGGTTGCTGCAGCAGCAGTGATGCGCGTGCTGCAAACACGCTGCCGGCCCA--GGCTCAT
ACCGCCATGTACAGCAAAACGTTGACGGGCGTGCTAAACTATATTTACTAGGCGCCATGTCGGACAACGACTTGTCGGGA
AATTGCTTCCTGTATCACTGTATGTAAGTCTTTAGCAAACACTTACACATTTGCGTGTTCTACGCAAATCGTCTAAAATT
TC--AGTGACTTTGCGCATCATGACAAAATTTCAGCAGTTCAATTGCGGGAATTGCCATTGTAGCAACTTCTGAGAGCTC
GCGCATGGGGTGCTTTCCATCTGACAGCCTTGTAACTGAATTCAATCCAAATTCATTTGCTATGAAAATCTTCTAATCAA
AGAGGAGGCCCCTACTCTCTTTACTGGGCAGAAGAAGATGCAAGTTTCAACCGGCAATTTTGAACGAACAGCCATAGACA
TCTCCAGGCTGTATGCTGTCTGTGATCCGATGCGCACATGCCACGAACACACTCAATACGGCAATACGGGCAGCGCAAGT
GAAGATTGATAATAATTGTGTATTGATCTATGTCTCAATGGGCTGTTTATATAAGTACAAAGTCTTGGAGTCCAAGTATA
GAAGAG-ATAGATTACAATTCAAAACTACCAAAAACTA-----AACCGGCCGAATATACTCTAATATCCCCC------CG
CAGTGTCAACGTCGGGCGTGACGATGTTGAGACTGGAGCGTATGTCTGTGAAGGATGCATTGAGAAGCCCTTTGGTGAAG
TTGTCAGCAAATTGCGCACTTGTTGGAACATGGAGAACACGAACCTCGTCAAGAGCCACTTTCTCACGAACAAAGTGAAT
ATCTATCTTAATGTGCTTCGTGCGACGATGCTGAACTGGATTAGATGCCATATAGACTGCTGAAATATTGTCACAGTAAA
CAATGGTAGCACGCTCGAGTGGCCGATGAAGCTCCACGAGGAGTTGCCGGAGCCAGACAGCCTCGGCGACAGCATGAGCA
ATAGCCCGATACTCAGATTCAGCGAAGGACCTGGAAATTGTATCCTGCCTTTTCAAAAACCAAGAAACAACATTATCACC
CAAATAAACACAATAGCCGGATGTGGATCGACGAGTGTTGAGACAACCCGTCCAGTCTGCATCAGAATA
>chr2D_2
-CGAGCTCCGTCGTCTGTAGGTCGCCGTTACTGAGCACATCCATGCTTGCTCTCTGTCGCCAAACGCCTCCCCATCGACC
GGGTTGACAGATCCGACACGCCACAACACGGCGCCGTACATCCACGCCCACCCCGCGCTCGGCCCTGCATTGTTGTTCGC
AACATCACCTCTGAGACAAGTTTCGGCAACAATGACGTTGTTGCGGAACGGCGACAACGAACGACGATTATGCTAGTGCG
CGATGCGTCTGGACATGCTTTTGCAATTTTTGCAACAAGAAAATTAG--------------AAAAGAAGAGGTTCTGCAA
CAAGGATTTTGTTGCAGAAAATTAAAGAAGGAAAGGTTTTGCAACAAGGGCCTCGTCGCAGAAATTAAAGAAGAGGAACT
TTTGCAACAAGAGCATTGTTGCCGAAATTAAAGAGAAACTGGTCGGCTCATGCATACACAATCAGACGGTTCGCAGCCTG
GCCGATCTTTTAAAAAGATCAGCCGGCGGACGCGTAGCAAGCCCCAA---------------------------------
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>chr1B_666
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------------------------------CATACGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCCCAGCAA
CATGCAGCACATGGAAGATTGACATATGCCGTGAGCCTTGTCACGCTCCATGATGCAGCACTCGTACACTAGATGAT--T
GATATAGTTAAGTCACAGCTCACTAGGCTAACCATAATTTGCTCCGCACATAATGAACGGATATCAACAAACATGTGTTC
CTACATGTGGTGGACAGAGAGGCTGACTCCCATTTTTACCTCCGACATGTTCTAACAGCCATACATCCTCATTGCTCCTT
GTTTGGCTCCTTCCCATAATAACCTGGCAATGGCATTTTATGTTTCTCTGTCCCACCGGAAACCGAAAACCAGAAGAAA-
----GGGAGGGCAAACAA--CGCGAAAGG-----------GAATCGCCTCCGTTCGTCCGATCCCGATCAGATGGCACGG
GTTGTGTCCAGCTGTGCCGCCCTCGTGGCGCAAAGGTCTTCCCCAAAACTGTGCAAACGTACATGTCCTTTCATTTCGAT
CCAACCTGACGCCGAACTCACA----------------------TGCAGGAGGGGATTTTCCGCCGCGATAACCGCCATC
GATGTGTCAGCGAAGAAGGTCGAGGAGAAGGCGGTGAAGTTGGGTATGGCGGCGACAGAGGACACGACGAAGGACAAGAC
GGCGTTCTGGGAGCCGGACCCCAAGACCGGCGACTACCGGCCGGTGACCAGCACCAAGGAGGTGGATCCGGCCGACCTGC
GCGCAGAGATGCTCAAGCGGAGGTTGCTGCAGCAGCAATGATGCGCGTGCTGCAAACACGCTACCGGCCCATAGGTTCAT
ACCGTCATGTACAACAAAACGTTAACGGGCGTGCTAAACTATATTTACTAGGTGCCATGTCGGACAACGACTTGTCAGGA
AATTGCTTCCTGTAA----GTATGTAAGTCTTCAACAGACACTTACACATTTACTTGTTCTACGCAAATCGTCCAAAATT
TCCCAGTGGTTTCGCACACCACGACAATATTTCAGCAGTTTGATTACGGGAATTGCCATTGTAGCAACTTCTGAGTGCTC
A-GCATGGGGTACCTTACATCTAACAGCCTCGTAATTGAATTCAAT-CAAATTCATTTGCTATGGAAACCTTTTAATCAA
AGAGGAGGCCCCTACTCTCTTTACCAGGG---AGAAGATGCAAGTTTCCAACAACTATTTTGAACGAACAGCCTTCGACA
TCTCCAAGTTGTATGTTGTCTATGATCCGATTCGCACATGCCATGAACACACTCAATACGGCAATACAGGCAGCACA---
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>chr1D_666
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------------------------------CATACGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCGCAGCAA
CATGCAGCACATGGAAGATTGACATATGCCGTGAGCCTTGTCACGCTCCATGATGCAGCACTCGTACTGGTACCCAAGAT
GATATAGTTAAGTCACAGCTCACATGGCTAACCATAATTTTGTCCGTACATAATGAACGGATGTCAAGAAACATGTTTTC
CTACATGTGGCGGACAGAGAGGCTGCCTACCATTTTTACCTCCGACATGTTCTAACAGCCATACATCCTCATTGCTCCTT
GTTTGGCCCCTTCCCATAATAACCTGGCAATGGCATTTTCTGTTCCTCTGTCCCACCTGAAACCGCAAACCAAAAGAAAA
GAAAGGGAGAGCAAACAA--CGCGACGGAAGTGAAGCCTAGAATCGTCTTCGTTCGTCCGATCCTGATCAGATGGCCCGG
GTTGCGTCCAGCTGTGCCGCCCTTGTGGCGCAAAGGTCCTCCCCGAAACTTTGCAAACGTATAGGTCCTTTCAGTTCGAT
CCAACCCGACACCGAACTCACACGATGTGAGGGTGTATGTGTGGTGCAGGAGGGGATTTTCCGCCGCGATAACCGCAATC
GATGTGTCGGTGAAGAAGGTCGAGGAGAAGGCGGTGAAGCTGGGTATGGCGGCGACGGAGGACACGACGGAGGACAAGAC
GGCGTTCTGGGAGCCGGACCCCAAGACCGGCGACTACCGGCCGGTGACCGGCACCAAGGAGGTGGATCCGGCCGACCTGC
GCGCCGAGGTGCTCAAGCGGAGGTTGCTGCAGCAGCAGTGATGCGCGTGCTGCAAACACGCTGCCGGCCCA--GGTTCAT
ACCGCCATGTACAGCAAAACGTGAACGGGCGTGGT-AACTATATTTACTATGCGCCATGTCGGACAACAACCTGTCAGGA
AATTGCTTCCTTTAACTCTAGCAAAT--------------ACTTACACTTTTACTTGTTCTACGCAAATCGTCTAAAATT
TCGCAGTGACTTTGCGCACCACGACAA-----------------------------------------------------
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>chr1B_1978
CAAC----------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
GAAGATTGATAGTAATTGTGTATTGATATATGCCTCAATGGGTTGTTTATATAAGTACAAAGTCTTGGAGTCCAAGTATA
GAAGTGAATAGATTACAATTCAAAACTACCAAAAACTG-----AACCGGCCGAATATACTCTAATATCCCCC------CG
CAGTGTCAACGTCGGGCGTGGCGATGTTGAGACTGGAGCGTATGTCGGTGAAGGATGCATTGGGAAGCCCTTTCGTGAAG
ATGTCAGCAAATTGCGCACTTGTTGGAACATGGAGACCACGAACCTCGCCAAGAGCCACTTTCTCACGAACAAAGTGAAT
ATCTATCTCAATGTGCTTCGTGCGATGATGCTGAACTGGATTAGATGCCATGTAGACTGTTGTAATATTGTCACAGTAAA
CAATGGTAGCACGCTCGAGTGGGCGATGAAGCTCCACGAGGAGTTGCCGGAGCCAGACAGCCTCGGCGACAGCATGAGCA
ACAGCCCGATACTCAGATTCAACGGAGGACCTGGAAACTGTATCCTGCCTTTTTGAAGACCAAGAAACAACATTATCACC
CAAATAAACACAATATCCGGATGTGGATCAATGAGTGTCGGGACAACCCACCCAGTCTGCATCAGAATA
>chr4D_1978
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---------------------------------------------------------------------------CAAGT
GAAGATTGATAATAATTGTGTATTGATCTATGCCTCAATGGGCTGTTTATATAAGTACAAAGTCTTGGAGTCCACGTATA
TAAGAG-ATAGATTACAATTCAAAACTACTAAAAACTG-----AACCGGCCAAGTATACTCTAATATCCCCC------CG
CAGTGTCAACGTCGGGCATGACGATGTTGAGGCTGGAGCATATGTCGGTGAAGGATGCATTGGGAAGCCCTTTGGTGAAG
ATGTCAGCAAATTGCCCACTTGTTGGAACATGGAGAACACGAACCTCACCAAGAGCCACTTTCCCACGAACAAAGTGAAT
ATCTATCTCAATGTGCTTCGTGCGACGATGATGAACTGGATTAGATGCCATATAGACTGCTGAAATATTGTCACAGTAAA
CAATGGTAGCACGCTCAAGTCGGTGATGAAGCTCCACGAGGAGTTGCCAGAGCCAGACAGCCTCGGCGACAGCATGAGCA
ACAGCCCGATACTCAGATTCAGCGGAGGACCTGGAAACTGTATCCTGCCTTTTCGAAGACCAAGAAACAACATTATCACC
CAAATAAACACAATAGCCGGATGTGGATCGACGAGTGTCGGGACAACCCGCCCAGTCTGCATCAGAATA
>chr1B_1980
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-----------------------------------------------------------------------------AGT
AAAGATTGATAATGATCGTGTATTGATCTATGCCTCAATGGGCTGTTTATATAAGTACAAAGTCTTGGACTCCAAGTATG
GAAGAG-ATAGATTACAATTCAAACTA--CCAAAACTA-----AACCGGTCAAATATACTCTAATATCCCCCCCCCCCCG
CGGTGTCAACGTCGGGCGTGACGATGTTGAGACTGGAGGGTATGTCGGCGAAGGGTGCATTGGGAAGCCCTTTGGTGAAG
ATGTGAGCAAATTGTGCACTTGTTGGAACATGGAGAACACGAACCTCTCCAAGAGCCACTTTCTCACGAACAAAGTGGGT
ATCTATCTCAATGTGCTTCGTGTGGCGATGCTGAACTGGATTAGATGCCATATAGACTGCTGAAATATTATCACAGTAAA
CAATGGTAGCACACTCGATTGGTTGATGGAGCTCCACGAGGAGTTTCCGGAGCCAGACGACATCGGCGACAGCATGAGCA
ATAGCCCGATACTCAGATTCAGTGGAGGACCTGGAAACTGTATCCTGCCTTTTCGAAGACCAAGAAACAACATTATCACC
GAAATAAACACAATAGCCAGATGTGGATCGTCGAGTGTCGGGACAACCCGCCGAATCTGCATCAGAATA
>chr5A_1981
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------------------------------------------------------------------------------GT
GAAGATTGATAATAATTGTGTATTGATCTATGCCTCAAAGGGCTGTTTATATAAGTACAAAGTCTTGGAGTCCAAGTATA
GAAGAG-ATAGATTAAAATTCCAAACTACCAAAAACTG-----AACCGGTCGAATATACTCTAATATCCCCC------CG
CAGTGTCAACATTGGGCGTGACGATGTTGAGACTGGAGCGTATGTCGGAGAAGGATGCATTTGGAAGCCCTTTGGTGAAG
ATGTCAGCAAATTGCGCACTTGTTGGAACATGGAGAACACGAACCTCGCCAAGAGCCACTTTCTCACGAACAAAGTGAAT
ATCTATCTCAATGTGCTTCGTGCGACCATGTTGAACTAGATTAGATGCCATATAGACTGCTGAAATATTGTCACAGTAAA
CAATGGTAGCACGCTCGAGTGGGCGATGAAGCTCCACGAGGAGTTGCCGGAGCCAGACATCTTTGGCGACAGCATGAGCA
ACAACCCGATACTCAGATTCAGCGGAGGACCTGGAAACTGTATCATGCCTTTTCGAAGACCAATAAACAACATTATCACC
CAAATAAACACAATATCTGGATGTCGATCGACGAGTGTCGGGACAACCCTTCTAGTCTGCATCAGAATA
>chr6D_1982
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-------------------------------------------------------------------------------T
GAAGATTGATAATAATTGTGTATTGATCTATGCCTCAATGGGCTGTTTATATAAGTACAAAGTCTTGGAGTCCAAGTATA
GAAGAG-ATAGATTACAATTCAAACTA--CCAAAAACTGAACCGAC----CGAATATACTCTAATATCCCCC------CG
CAGTGTCAACGTCGGGCGTGACGATGTTGAGACTGGAGCGTATGTCGGTGAAGGATGCATTGGGAAGCCCTTTGGTGAAG
ATGTCGGCAAATTGCGCACTTGTTGGAACATGGAGAACGTGAACCTCGCCAAGAGCCACTTTCTCACGAACAAAGTGGAT
ATCTATCTCAATATGCTTCGTGCGACGATGTTGAACTGGATTAGATGCCATATAGACTGCTGAAATATTGTCACAGTAAA
CAATGGTAGCACGCTCGAGTGGGCGATGAAGCTCCACGAGGAGTTGCCGCAGCCAGACAGCTTCGGCGACAGCATGAGCA
ACAGCCCGATACTCAGATTCAACGGAAGACCTGGAAACTATATCCTGCCTTTTCGAAGACCAAGAAACAACATTATCACC
CAAATAAACACAATAGCCGGATGTGGATCGACGAGTGTCGGGAGAACCCGCCCAGTCTGCATCAGAATA
>chr6B_1982
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-------------------------------------------------------------------------------T
GAAGATTGATAATAATTGTGTATTGATCTATGCTTCAATGGGTTGTTTATATAAGTACAAAGTCTTGGAATCCAAGTATA
GAAGAG-ATAGATTACAATTCAAACTA--CCAAAGCTG-----AATCGGCCAAATATACTCTAATATCCCCC------TG
CAGTGTCAACGTTGGGTGTGACGATGTTGAGACTGGAGCGTATGTCGGCGAAGGGTGCATTGGGAAGCCCTTTGGTGAAG
ATGTCGGCAAATTGCACACTTGTTGGAACATGGAGAACACGAACCTCACCAAGAGCCACTTTCTCACGAACAAAGTGGAT
AC----CTCAATGTGCTTCGTGCGACGATGCTGAACTAGATTAGATGCCATATAGACTGCTGAAATATTATCACAATAAA
CAATGGTAGCATGCTCGAGTGGTCAATGGAGCTCCACGAGGAGTTGCCGGAGCCAGACGGCCTCGGCGACAGCATGAGCA
ACAACCCGATACTCAGATTCAGCAGAGGACCTAGAAACTGTATCCTGCCTTTTCGAAGACCAAGAAACAACATTATCACC
CAAATAAACACAATAACCTGATGTGGATCGTCGAGTGTCAGGACAACCGGCCCAATCTGCATCAGAATA
>chr7B_1982
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-------------------------------------------------------------------------------T
GGAGACTGATAATAATTGTGTATTGATCTATGTCTCAATAGGCTGTTTATATAAGTACAAAGTCTTGGAGTCCAAGTATA
GAAGAG-ATAGACTACAATTCAAAACTATCAAAAACTG-----AAC----CGAATATACTCTAATATCCCCC------TG
CAGTGTCAACGTCGGGCGTGACGATGTTGAGACTGGAGCGTATGTTGGTG------------GGAAGCCCTTTGGTGAAG
ATGTCATCAAATTGTGCACTTGTTGGAACATGGAGAACACGAACCTTGCCAAGAGCCACTTTCTCACGAACAAAGTGGAT
ATCTATCTCAATGTGCTTCGTGCGGCGATGCTGAACTGGATTAGATGCCATATAGACTACTGAAATATTGTCACAGTAAA
CAATGGTAGCACGCTCGAGTGGTCAATGAAGCTCCACGAGGAGTTGCCGGAGCCAGACGACCTCGACGACAACATGAGCA
ACAGCCTGATACTCAGATTCAGCGGAGGACCTGGAAACTGTATTCTGCCTTTTCGAAGACCAAGAAACAACATTATCACC
CAAATAAACACAATAGCGGGATGTGGATCGTCAAGTGTCGGGACAACTCG-CTAGTCTGCATCAGAATA
>chr5B_1983
GATGATTGGAGAAGAATAGT------------------------------------------------------------
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------------------TGTATTGATTGGGGCCTCAATGGGCTGCTTATATAAAGCCCAAGTCTTGGAGTCCAAGAATA
CTAGAG-ATAGATTACAAGTCAAACTA--CCAAAACTATATA-AAC----CGACTATACTCTAAGATCCCCC------TG
CAGTGTCAACGTCAGGTGAAATGATGTTGAGACTGGAGCGTATGTCGGTGAAGGATGCATACAGGAGCCCCTTGGCGAAA
ATGTCAGCAAATTGCGCACTCGTTGGAACATGAAGAACACTGACCTCGCCAAGAGCCACTTTCTCACGAACAAAGTGGAT
ATCAATCTCAATGTGTTTGGTGCGACGATGTTGAACATGATTGGATGCCATATAGACTGTAGAAATATTGTCATAGTAAA
CAATCGTGGCACATTTGATTGGTCGATGAAGCTCAACAAGAAGCTGACGTAACCACATCGCCTCGGCCACGGAATGAGCA
ACATACCTATATTTATCTTCTGCAGAGGACATGGAAACTGTAACCTGCCTTTTAGAAGACCAAGAAACAAGATTATCACC
CAAATAAACACGATAGCCGGATGTAGATCATCGAGTATCTAGAAAACCTACCCAGCCTGCATTAGAATA
>chr1A_2016
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---------------------------------CTCGATGGGTTGTTTATATAAGATACAAGTCTTGGAGTCCAAGAATA
GTAGAG-ATAGATTACAATTTGAACTA--CCAAAACTATGCAAAAC----CGTATATACTCTAATATCCCCC------CG
CAGTGTCAACGTCAGGTGGAACGATGTTGAGACTGGAGCGGATGTCGGTGAAGGATGCAGTCGGGAGCCCCTTGGTGAAA
ATATCAGCAAATTGCGCACTAGTTGGAACATGAAGCACACAGACCTTGCCAAGAGCCACTTTCTCACGAACAAAGTGGAT
ATCAATCTCGATGTGTTTGGTGCGGCGGTGCTGAACAGGATTGGACGCCATATAGACTGCAGAAATATTGTCACAATAAA
CAATTGTTGCATGCTCAAGTGGTCGATGAAGCTCAACGAGAAGCTGACGGAGCCACACCGCCGCAGCCACGGAATGAGCA
ACAGACCTATATCCAGCTTCTGCAGAAGACCTGGAAATTGTAACCTGCCTTTTAGAAGACCAAGAAACAATATTATCACC
CAAATAAACACAATAGCCGGATGTAGATCATCGAGTATCTGGACAACCTGCCTAGTCTGCATCAGAATA
>SNPs
----------S---------SSS-S------S---------------------S--S-------S--------S------
--S-S---SS-----SS--------S---S---SS----S--------------S---------S--------------S
S-S----------------------S------S----------------------------------S------------
----S--S-----------------------S--------SSS--SSSSSSSSSSSSSSSS----S--------S-----
--S-SS------------------S-----S-----S----------S-S---S--S-----------------S---S-
----S-----S-----------SS-----------------S---S---S-S----SS----SS-----S--S-S---S-
---------------S-----------------------S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------------------------------------
--S---------------------S--------------------------------S---------S-S---------S
--------------------------------------------------------------------------------
-------------------------------S----S------------------S------------------------
-------------------------------------------------------S------------------------
S-----------------SS--S-------------S------------------S------------------------
------------------S---------------------------------------------S--S-S----------
---------S-SS-----S-S---S-----SSS-------S----------------S----S-----------------
-SS-----S-----------S-----------------------S-S------------------S--------------
----------S-------------------------------SS-------------S--S-------------------
----------------S-S--------------------------------------------------------S----
-----------------------S----------------------------------------------------S---
--------------S-S---------------S-S--S--------------S-S-------------------------
------------------S--S-----S------------SS---S-----------------------------S----
SS---------S-S--S-----S-------S----S----------S-----------------S---S---S-------
------------------------SS--SSSS----------------S-S-SS-S-----------------S-S----
------S-S------S-----S---------S-----------S-----------------------S------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
S-----------------------------------------------S-------------------------------
--------S-----------------------------------------------------------------------
----------------------S---------------------------------------------------------
------------------------S-----------------------------S--S----------------------
--------------------------------------S------------------------------
>forward_160
--------------------------------------------------------------------------------
------------------------------------------------------------GGCCTTGCATTGTTGTTCGT
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>reverse_1404
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-------------------------------------------ATGACCGGCACCAAAGAAGT-----------------
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---------------------------------------------------------------------
>forward_674
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--------------AACACGCAGCAAACGTCATC----------------------------------------------
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>reverse_1726
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---------------------------------------------GCGGGAATTGCCATTGTAGC---------------
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