>input_sequence_74563
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-------------------------------------------------------------ATGTCTGGGCATGGGTCGT
CGGGCAGGCACCCCTTCTACCGCGGCATCCGGAGCCGGTACGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCG
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGAGATGGCCGCCGTGGCGTACGACGTGGCCGCCCACGCTCTCCGCGG
GGCCGACGCGGCGCTCAACTTCCCCGCCTTAGCGGCCACGCGCCCGGCACCGGCGTCCACCTCCGCGGACGGCATCCGCG
CGGCGGCGGCCGCCGCAGCCGCCTCCATCCGGCACGACCGCGCCGGCGGCGGCATTGCCCCTGCGGCTGCTGGATCCGCT
CTGCAGCAGCAGTTGGGTGGAACTGGAAGCAGTGCCGCTGATGCTGCCTCGGCGAGCGTCATGGCCCAGCAGGATCGAGC
CGGCATTGGGTTCAATCAGTACTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTCCGCAACATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCCCCGACTCCTCCGACGAATCGCCGGACCCTTCCGAGGTTGGGGAGAGCCTC
TGGAGCTACCGTGACCCGTAA-----------------------------------------------------------
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>chr5D_1_TraesCS5D01G396000
AGTTCGCTGCACCGGCGGACCGGCCAGCTAGGTTGTCCACAGAGCCGCATTCATTAAGCCGGCCCGCATGGCGCCGGGAC
TCTGCATCGAAGAATTACTAACTCTGCATGTCTGGTGACTCCATGTTCAGTAGCCGCATGAGCCTTGTTCTACATATCCT
ACAGGAGGTTGGCAAGCTCCTGACCTCCAAGCTCCAACATCGCCGTCGATGTTCGTTTGGGCTTCACGAGCGTGCCTGCG
CCGGCAACATAACGTTGTGATTTTAGAAGCCATCAGCTCCTGGCGTTTTGCGTCCCGGTGCCGTGGGTGCCGGCTTAACC
ACCCTGGGTGATTTATCCACCACCACGGCGTGGGTGTTTTTTTTTCAATTAATGGGAGAAACGAGGAAGATGAAGGAGAG
CCTTCTGATTAGAGTGAACGGTGGATTTTGAAGTTACAGCACCCGTACAGTGACAACATAACAGCAGAGGAGCCGAACCC
AGCAGTTTGCTTCCCCGGTAACAGCTCCGAGAGCCGGCCGGCGTCATGGCGTCCCGCATGCTTCCGCCCGCGCGCTTCTT
CGCCATCTTAAGCAAATATATAAAGATCATGTAGGTGGGCTATTAAAGATTAGAGAAGATAAAAGAGGAGAGAGAAGAGA
AGTACTAGTAGTTTGTAGATTTACAATCGGCCGTGGCAATCTTTAACACCCTTTACGAGAAAAAAAGGCAGGCCGTGCAT
ATTAATAATGACATAAGTATGATTACTATATGAGTGAGCTATTAAGTTGCCTGCAGATGACATGACAACCCTATTTAATC
GGTTGTTGGCTATAATATTTACGCTGCTCGGAGTTCCTCGGTGTGTAGTATTAGTTTATCCGACGG-------CGAACTG
CTTGCACGCGCACACGCGCACACTCCCA----CA--GTCACCACTCT--------CAGCTAAGCACTCATCGACTGATAC
TACGTACGCTCTAATAGGTGAAGTGTACTGTAGTCCGACCATTGCCCTAGCTGATCAACCAATGTCTGGGCATGGGTCGT
CGGGCAGGCACCCCTTCTACCGCGGCATCCGGAGCCGGTACGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCG
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGAGATGGCCGCCGTGGCGTACGACGTGGCCGCCCACGCTCTCCGCGG
GGCCGACGCGGCGCTCAACTTCCCCGCCTTAGCGGCCACGCGCCCGGCACCGGCGTCCACCTCCGCGGACGGCATCCGCG
CGGCGGCGGCCGCCGCAGCCGCCTCCATCCGGCACGACCGCGCCGGCGGCGGCATTGCCCCTGCGGCTGCTGGATCCGCT
CTGCAGCAGCAGTTGGGTGGAACTGGAAGCAGTGCCGCTGATGCTGCCTCGGCGAGCGTCATGGCCCAGCAGGATCGAGC
CGGCATTGGGTTCAATCAGTACTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTCCGCAACATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCCCCGACTCCTCCGACGAATCGCCGGACCCTTCCGAGGTTGGGGAGAGCCTC
TGGAGCTACCGTGACCCGTAAAC----------CGATCGATCGATCATGGCCTACAGCACTACTTACGTAG---------
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------------------------TAACGATGATAGGTAAGGACGGAGGCGCATACCGGCGTAGAGACCCGTTTTTTCTA
TCCGGTAACGCATGCAGATGTGGGTTTAGCATCTGCCT-GATCTCCTTCTACCTC-TCTCTC---CTTTTTCTCTCTATA
TGATCTTAATTTTTTTTTCTCAACATTAAAAAAAGAGAGT-TTTTTTCCCCTTCTGATTGAAGTACTTGCGTGTTTTGGA
CCCTTGTGGTTTGATGAAAGCTACAAGGGGAAAAGGTCTCCGGTTTGGCTCTGTCTAAAAAATCCGACCTTTGCTTGGCA
GTATATAAGATACTTCACTAAAATCTCTGAGTGGGTCACGAGGAGGCTTGCATGGACTGTTCATGTGGATGTACGTAGTT
GTGTGTTGTATTTGCAATTGATTGTAACTATGATCTCAATCAACTATGATTTTGGCAGATGAAACATCGTTTTCTTCTAA
CCATTCTCTGACAACGGCAACTGTACGAATCCCTAGAAAAAAGAAAGGACATGTTTATTACTAGGATGCAACATCAACCT
TTAGTAAATTAAAGTGACAGTGCTGAGGACATCTACATCAACTCTATTGCCCTTCCGATGAAGCGTGGGTAGTTTACCAC
AGACCTATGGGTCCATACCTAGTAGCTAGATGGCTTCTTCTCTCTCTTTGATTCTCAATACCATGTTCTTCTCGATGTTC
TTGGAGATCTATCCGATGTAATCTTCTTTTGCAGTGTGTTTGTCGAGATCCGATGAATTGTGGATTTATGATCAACTTAT
CTATGAATGTTATTTGAATCTTCTCTGAATTCTTATATGCATGATTTGATATCTTTGTATTTCTCTTCGAATTATTGGTT
TGGTTTGGTCAACTAGATTGGTTTTTCTTGCAATGAGAGAGGTGCTTAGCTTTGGGTTCAATCTTGCGTGATTTCACCCA
GTGACAAAGTAGGGGTAGCGAGACACGTAT
>chr2D_829
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----------------------------CGGAGTTCCTCCGCGTGC---ATTAATTTATCCGACGG-------CGAACTG
CATGCACGCGCACAC--------TCCGGCAGTCA--GTCACCACTCT--------CACCCACGCACCCATCGACTGATAC
TGCATTCCTTCTCAGTAGTGTAGTGTCGGGTAGTGCGGCCATTGCCCTAGCTGATCAATCAATGTCTGGGCATGGGTCGT
CGGGCAAGCACCCCTTCTACCGCGGCATCCGGAGCCGGTGCGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCC
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGAGATGGCCGCCGTGGCCTACGACGTGGCCGCCCAGGCGCTGCGCGG
GCCCGACGCGGCGCTCAACTTCCCCGCCTTAGCCGCCACGCGCCGCGCCCCGGCGTCCACCTCCGCGGACGACATCCGCG
CGGCGGCGGCCGCCGCAGCCGTCTCCGTCCAGCACGATCGCGCCGGCGGCGGCATTGCCCCCGCGGCTGCTGGATCCGCA
CTGCAGCTGCAGCAGCAGCTGAGCGGAGGCAGTGCCG---CCGCTGCCTCGGCGAGCGGCGCGGCCCAGCAGGATCAAGC
CGGCATTGGGTTCAACCAGTTCTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTGCGCAGCATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCCCCGACTCCTCCGACGAATCGCCGGACCCTTCCGAGGCCGGGGAGAGCCTC
TGGAGCTACCGCGACCCGTAGCCATAGA----TCGATCGATCGATCATGGCCTCCATGCCATGGCGTCGCGACTTGCTAC
TAGTAC-CACTACTATTGCTGCTACAGCACCAC-----------------------------------------------
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---TACTGAACTTGGAGCCTGAAATAACGAGGATTGGTAA----GGAGGCGCGTACCGGCGTTGAGACCCGTTTTTTCTC
TCCGGTAACGCATGCAGATGTGGGTTTAGCGTCTGCCCTGATCTCCTTGCACTTCTTCACCC---CTTTTTCTCTCAAT-
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>chr5B_831
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------------------------------GAGTTCCTTGGTGTGC---ATTAATTTATCCGACGGCGAACTCCGAACTG
CTTGCACGCGCACAC--------TCCCA----CACAGTCACCCCTCTCAGCTACGCGCCTACGCACTCATCGACTGATAC
TACAAACACTCTAATAAGTGAAGTGAAGTGTAGTGCGGCCTCTGCCCTAGCTGATCAATCAATGTCTGGGCATGGGTCGT
CGGGCAGGCACCCCTTCTACCGCGGCATCCGGAGCCGGTACGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCG
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGAGATGGCTGCCGTGGCGTACGACGTGGCCGCCCACGCGCTCCGCGG
GGTCGACGCGGAGCTCAACTTCCCCGGCTTAGCCGCCACGCGCCCGGCGCCGGCGTCCACCTCCGCGGACGGCATCCGCG
CGGCGGCGGCCGCCGCAGCAGCCTCCATCGGGCACGGTCGCGCCGGCGGCGGCATTGCCCCCGGGGATGCTGGATCCGCT
CTGCAGCAGCAGTTGGGTGGAACTGGAAGAAGTGCCG---ATGCTGCCTCGGCGAGCGGCACGGCCCAGCAGGATCAAGC
TGGCATTGGGTTCAATCAGTACTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTGCGCAACATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCGCCGACTCCTCCGACGAATCGCCGGACGCTTCAGAGGCTGGGGAGAGCCTC
TGGAGCTACCGTGACCCGTAGAC----------CGGTCGGTCGATCATGGCGTCGT---------------ACTTGCTAC
TACCGCGCGCTACTATTGCCACAGCAGTAGCACTACTACGTACAGT----------------------------------
-----------------------------------------------------------------------------AGT
ACGTACTGAATTTGGAACCTGAAACAACGATGATAGGTAAGGACGGAGGCGCATACCGGCATAGAGACCCGTTTTTTCTA
TCCGGTAACGCATGCAGATGTGGGTTTAGCGTCTGCGC-GATCTCCTTCTACCTC-TCTCTC---CTTTTTCTCTCTATA
TGATCTTAATTTTTTTC---CAACATTAAAAAAGAGA----TTTTTTCCCCTTCTGATTGAAGTACTTGCGTGTTTTGGA
CCCTTGTGGTTTGAGGAAAGCTACAAGGGGAAAAGGTCTCCAGTTTGGCTCTGTCTGAAAAATCCGACCTTGGCTTGGCA
GTATATAAGGTACTTCACTAAAATCTCTGAGTGGGCCACGAGGAGGCTTGTGTGGACTGTTCATGTGGATGTACGTAGAT
GTGTATTGTATTTGTAATTGATTGTTACTATGATCTCAATCAACTGTGATTCTGGCAGATGAAACATCGTTTTCTTCGAA
CCATTCTCTGACAAC-GCAACTGTAGCAACCTCTAGATAAAAGAAAGGACATGTTTGTTACCAGGATGCAACGTCAACCT
TTAGTAAATTAAAGTGACAGTGCTGAG-----------------------------------------------------
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>chr2B_850
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-------------------------------------------------ATTAATTTATCCGACGG-------CGAACTG
CATGCACGCGCACAC--------TCCCG----CA--GTCACCACTCC--------CGCCTACGCACCCATCGACTGATAC
TGCATTCCTTCTTAGTAGTGTAGTGTCGGGTAGTGCGGCCATTGCCCTAGCTGATCACTCAATGTCTGGGCATGGGTCGT
CGGGCAAGCACCCCTTCTACCGCGGCATCCGGAGCCGGTGCGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGAAAGGCC
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGAGATGGCCGCCGTGGCCTACGACGTGGCCGCCCAGGCGCTGCGCGG
GCCCGACGCGGCGCTCAACTTCCCCGCCTTAGCCGCCACGCGCCGCGCCCCGGCGTCCACCTCCGCGGACGACATCCGCG
CGGCGGCGGCCGCCGCAGCCGTCTCCGTCCAGCACGATCGCGCCGGCGGCGGCATTGCCCCCGCGGCTGCTGGATCCGCA
CTGCAGCTGCAGCAGCAGCTGAGCGGAAGCAGTGCCG---CCGCTGCCTCGGCGAGCGGCGCCGCCCAGCAGGATCAAGC
CGGCATTGGGTTCAATCAGTTCTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTGCGCAACATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCCCCGACTCTTCCGACGAATCGCCGGACCCTTCCGAGGCTGGGGAGAGCCTC
TGGAGCTACCGCGACCCGTAGCCATAGATCGATCGATCGATCGATCATGGCCTCCATGCCATGGCGTCGCGACTTGCTAC
TAGTAC-CAGTACTATTGCTGCTACAGCACCAC-----------------------------------------------
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---TACTGAACTTGGAGCCTGAAATAACGAGGATCGGTAA----GGAGGCGCGTACCGGCGTTGAGACCCGTTTTTTCTC
TCCGGTAACGCATGCAGATGTGGGTTTAGCGTCTGCCTTGATCTCCTTGCACCTCTTCTCTC---CTTTTTCTCTCAAT-
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>chr5A_886
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------------CACGCGCGCACTCCCA----CA--GTCACCACTCT--------CAGCTACGCACTCATCGAATGATAC
TACATAGGCTCTAATAAGTGAAGTGCAGTGTAGTGCGGCCATTGCCCTAGCTGATCAATCAAT------------GTCGT
CGGGCAAGCACCCCTTCTACCGCGGCATCCGGAGCCGCTACGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCG
CGCCGCATCTGGCTCGGCACGTTCCCGACGGCCGATATGGCCGCCGTGGCGTACGACGTGGCCGCCCACGCGCTCCGAGG
GGCCGACGCGGCGCTCAACTTCCCCGGCTTGGCCGCCACGCGCCCGGCGCCGGCGTCCACCTCCGCGGACGGCATCCGCG
CGGCGGCGGCTGCGGCAGCCGCCTCCATTCGGCACGATCGCACCAGCGGCGGCATTACCCCCGCGGCTGCTGGATCCGCA
GTGCAGCAGCAGTTGGGTGGAACTGGAAGCAGTGCCG---CTGCTGCCTCGGCGAGCGGCACGGCCCAGCAGGATCAAGC
CGGCATTGGGCTCAATCAGTACTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTGCGCAACATGGCCGCCG
GGATGATGATGAGCCCCCCGAGGCTCAGCCCCGACTCCTGCGACGAATCGCCGGACCCTTCAGAGGCTGGGGAGAGCCTC
TGGAGCTACCGTGACCCCTAGAC----------CGATCGATCGATCATGGCCTCCATGCCATGCCATGGCGTCGTACTAC
TACCGCGCGCTACTATTGCCACAGCACTACGTACTAGTACATAGTACTCCCTCCATCCGAAAATACTTGTCTTAGAAATG
ATTGTATCTAGACTTATTTTAGTTATAGATACATTCATTTTATTCATTTTTAAGGATGAGTATTTCCGAACGAAGGGAGT
ACATACTGAATGTG------GAAATAACGATGATAGGTAACGACGGAGGCGCATACCGGCGTAGAGACCCGTTTTTTCTA
TCCGGTAACGCATGTAGATGTGGGTTTAGCGTCTGCGT-GATCTCCTTCTACCCC-TCTCTCTCTCTCTCTCTCTCTCTT
TGAT-----TTTTTTTC---AAACATTAAGAAAAGAGAGAGTTTTTTTCCCTTCTGATTGAAGTACTTGCGTGTTTTGGA
CCCTTGTGGTTTGATGAAAGCTACAAGGGGAAAAGATCTCCGGTTTGGCTCTGTCTGAAAAATCCGACCTTGGCTTTGCA
GTATATAAGATACTTCACTAAAATCTCTGAGTGGGTCACGAGGAGGCTTGTATGGACTGTTCATGTGGATGTACGTAGTT
GTGTATTGTATTTGTAATTGATTGTAACTATGATCTCAATCGACATTGATTTTGGCAGATGAAACATCGTTTTCTTCGAA
CCATTCTCTGACAAC-GCAACAGTAGGAACCTCTAGAAAAAAGAAAGGACAAGTTTATTACTAAGATGCAACATCAACCT
TTAGTAAATTAAAGTGACAGTGCTTAG-----------------------------------------------------
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>chr2A_908
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----------------------------------------CCACTCT--------CACCTACGCACTCATCGACTGATAC
TCCATACGCCATAGACTA-GAAGTGCAGTGTAGTGCTGCCATTGCCCTAGCTGATCACTCAATGTCTGGGCATGGGTCGT
CGGGCAAGCACCCCTTCTACCGCGGCATCCGGAGCCGGTGCGGGAAGTGGGTCTCGGAGATCCGGGAGCCGCGGAAGGCC
CGCCGCATCTGGCTCGGTACCTTCCCGACGGCCGAGATGGCCGCCGTGGCCTACGACGTGGCCGCCCAGGCGCTGCGCGG
GCCCGACGCGGCGCTCAACTTCCCCGCCTTGGCCGCCACGCGCCGCGCCCCGGCGTCCGCCTCCGCGGACGACATCCGCG
CGGCGGCGGCCGCCGCAGCTGTCTCCGTCCAGCACGATCGCGCCGGCGGCGGCATTGCCCCCGCGGCTGCTGGATCCGCA
CTGCAGCTGCAGCAGCAGCTGAGCGGGGGCAGTGCCG---CCGCTGCCTCGGCGAGCGGCGCGGCCCAGCAGGATCAAGC
CGGCATTGGGTTCAACCAGTTCTTCCTGGACGAGGAGGCGCTCTTCGAGACGCCGCAGTTCCTGCGCAGCATGGCCGCCG
GGATGATGATGAGCCCCCCAAGGCTCAGCCCCGACTCCTCCGACGAATCGCCGGACCCTTCCGAGGCCGGGGAGAGCCTC
TGGAGCTACCGCGACCCGTAGCCATAGCTCGATCGATCGATCGACCATGGCCTACA------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SSSS----S--------------------------
-------------------S-----------------------------------------S------------------
---S------------S----------S------S--S--------------------S---------------------
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-----------------------------------------------------------------------S--------
---------------------------------S--------------S-------------------------------
-------------------------------------S-----------------------S------------------
-------------------------------------SSS------------------S--S--------------S---
---------------------------------------------------------------S----------------
------------------------------------------------------------------S-------------
--------------------S-----------------------------------SSS-SSSSS-S-SS----------
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------------------------------S-------------------------------------------------
----------------SSSS-------------------S----------------------------------------
--------------------------------------------------------S--------------S--------
--------------------------------------------------S-----------------------------
----S---------S------------------------------S-------------------------------S--
---------------S---------S---S-S------------------------------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_677
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-----------------GATTTACAATCGGCCGTGGC-------------------------------------------
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>reverse_2811
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----------AGGGGTAGCGAGACACGTAT
