>input_sequence_74560
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-----------------------------------------------ATGGCCGCGACGGCATGCGCCCACGGCTACGAC
GGCGGCCTGGTGCCGCCGGCGCCGGCGCAGGCGATGGGCCCGTTCGACGACGGT---------GGCCACCACCGTCCCGT
CATCCACGACCACTATCCCATCATCCACGGCCTCGTCATGCCTCCACCTCCT------------CCTCC---GCCACCGC
CGCCGCCTCCTTCTTTCCATCTCCATTCGGGCCACGCCAGCTCCAAGGCGGCAGCGTCTCGCCACCCCGGCCTCTGCACC
GAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCGTGGCCGACGA---CGACATTCA
AGACTGCA---------AGCAGG------------GCGACCAGGAGCTAGGGGCGCTGATGCCGGCGAGG----------
--AAAAGGGTGTTCCCGCCGCCGATATCGGTGATCGGCGCGGCCGGGAAGCCGTGGCAGTACCTGAGGGCGCAGCGCGGG
GGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCTGCCGGGAGGACGGCCGCCTCAA
GCTCCACTTTGCACACCCGGAGCCGGAGCCGGAGCCGGAGCCAGAGGAAGAAAACAACACCATCTAG-------------
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>chr5A_1_TraesCS5A01G024700
CGCCGCGGCCCTCTTCTTGTCCGGTGTTTAAGTCTGCTCGATCATCGGTGAGGGGGATTTCTTAGAATCGCCTGGGTCTA
GCTTCGAGTGCATGGGGGCATGCTCTTCTTATTTTGTGTTCTTACATGTTCATCTAATCGAGTATTCCCCTCATGTATGT
ATCCGTAGGTGAAAAAACTTGCAAGCTTTATAATTCTGCTGCAGCTACTTTTGGCTTGCGCCGAGGCCTTGTAAATTTGA
TACTTTCTGCCTTGGCTTAATAAAAATTTGGGGCGGGGGAAACCCCTTTCATTTCAAAAAAAATAAATAAATTAGCCAAC
CGTTCATTTTTTGGCGATAAACCGTAGTCAGCAGTTGGAGCCTTAAGATGAGGAGCTAAACCTGAAGTTAGGTAAGCTAG
AGCGAAATCTGGCATCCATGATCCAGGAAATACTACACTCCCTCCGTCCGAAAAAACCTGCCCGTCCGGAAATATTAATC
ATCAAAATAGATAAAGGGAATGTAGTATTTCAGGACAGCTGTTGAAAAGCAACCTGGGTACACTACTACACCAGATGTTG
CTTGCGCCGCTAGAAACGAGGGGCCGCCGGAGGACCGGTATCATGCCCATACCTCCTACACTTGCGTGATGCGGCTACCG
ATCAATCATCTACGGGTGCCGCACGATTGTGCAGCCGAAAATACATGCGAACGGGAGCCGTTGAGAATGAGACCGCACCA
TGATGCCGGGGCCGCAGCAAAGCAGTACGTATCTGCGTCTCGCGGCCCAACACGGTAGCCTAAGGCGATAGCATTATCAT
GAGTCGTGACAGCAGCAGCTGGCCACGAGTCCCGGCCCCCATCCCGTATCTTGCCGCCCCTATAATTCACCCACGGACGG
ACGGACGGACGGACCACATCGACTTGCAGCAAGTTGCGACGCGCCAACAGAGTCAGAGAGGAGAGTTTGAGTTCCGGTGT
TCCACTTGACGTCTTCACCTCACCACGTACGC-------GCGCGCGCATGGCCGCGACGGCATGCGCCCACGGCTACGAC
GGCGGCCTGGTGCCGCCGGCGCCGGCGCAGGCGATGGGCCCGTTCGACGACGGT---------GGCCACCACCGTCCCGT
CATCCACGACCACTATCCCATCATCCACGGCCTCGTCATGCCTCCACCTCCT------------CCTCC---GCCACCGC
CGCCGCCTCCTTCTTTCCATCTCCATTCGGGCCACGCCAGCTCCAAGGCGGCAGCGTCTCGCCACCCCGGCCTCTGCACC
GAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCGTGGCCGACGA---CGACATTCA
AGACTGCA---------AGCAGG------------GCGACCAGGAGCTAGGGGCGCTGATGCCGGCGAGG----------
--AAAAGGGTGTTCCCGCCGCCGATATCGGTGATCGGCGCGGCCGGGAAGCCGTGGCAGTACCTGAGGGCGCAGCGCGGG
GGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCTGCCGGGAGGACGGCCGCCTCAA
GCTCCACTTTGCACACCCGGAGCCGGAGCCGGAGCCGGAGCCAGAGGAAGAAAACAACACCATCTAGCTGATGGTGATCA
GGAGGAGGAATGCAACAAACCAGCAGACTGCAATATGACAGTCAAAAGAGAAGAGCCAACAGAACATAACAGGGTTTTGG
T--TTTCTCGGTTTAATAAGTATGAGTTATTA------TATCGTCAAAGAGTTCTAAGAGTGCCATGGCCATGGCAGTGT
CCTTCC------AAAGAGATGTAAATATTGCAACAAAATTGGTCAGTCTTTGCATC---CATCGTCGATCTACTGCTACT
TCCTCCTCTGTCTTCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGGTACAAGAATCAACAAAAGAAAGAC
GCGTTTGTCCTCGACATAGTCGCAATGATGCTCCACAGCTAAGGATGAGCGTGTATACAGTACAGGCTGCAAAGCACT--
--CTAGGCTCACAAGAACCCTGCCTGCCTGGACTTGGTTT-----GATGAAAAAGGAATACTACAACACATGTGACAGTT
GGTTGACAGGTTTACATTACAGCCAAAGCAAAGGGTATCTTG-----GGGG-TCAAAGATGCTGATTCTGCCAATTATCA
TCCACCTCTTCATTTTAAGCAAGTGATTAAAAACACTAACTGTAGGAGTATAGTAAAAAATGTTTCAACAACTGTGAAGC
AGTGATGCATTATTATCCTTCATGTTTCGAACATTTTGTTTCTGGTCACATGG---------TTACATTGCAGCATTTTG
TTGATGCTATATTGGTGGAAAGCCACCAAGCTGCAAACACAGAGATACCTCAACATTTGGTGCGGCACATGTATTATTCC
T---------------GGACCCTCTGTTTTCCCGGTATTT-----TGGAGCTCATGTCCTTCTCATACAAGTGGGACCCA
GGATGATGA---TGTCTTGCCATCCAACGTCAACAGCACTTTTGTATAGATCAGGACGCATGTCCCTGAATATACCCCAA
CAGCACGCTGTATAGATCAGGAATTGACCTCGTCCAAGTCGAACTCTGCTGCAAGCACCTCCTCGTCTTCGTCATTTGCA
AGCTTGATGAT
>chr5D_815
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--------------GCAGCTGGCCACGAGTCCCGACCCCCATATCTTCCCGC----CCCCTATAATTTACCCACGGACGG
GCGGACCCCATCGACCGCGCCAACAGG-----------------CAACGGAGTTAGAGAAGAGAGTTTGAGTTCCAGTGT
TCCACC--------TCACCTCACCACCACGTACGCGCGAGCGCGCGCATGGCCGCGACGGCATGCGCCTACGGCTACGAC
GGCGGCCTGGTGCCGCCG---CCGCCGCAGGCGATGGACGCGTTCGACGACAGCGCCCGAGGCCGCCGCCACTGTCCCAT
CATCCACGACCACTATTCCATCATCAACGGCCTCGTCATGCCTCCACCTCCT------------CCTCCTCCGCCGCCGC
CGCCGCCACCACCTTTCCATCTCCCTTCGG---GCGCCAGCTCCAAGGCGGCAGCGTCTCGCCACCCCGGCCTCTGCACC
GAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCGTGGCCGACGA---CGACATTGA
AGACTGCAAGAGGCGGCAGCAGG------------ACGACCAGGAG---GAGACGCTGATGCCGGCGAGG----------
--AAAAGGGTGTTTCCCCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGCAGTACCTGAGGGCGCAGCGCGGG
GGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCTGCCGGGAGGACGGCCGCCTCAA
GCTCCACTTTGCCCACCCGGAGCCGGAGG-----------------------AACATCACCATCTTGCTGATGATGATGA
GGAGGAGGAATGCAACA-ACCAGCAGACTGCAATATAACAGTCAAAAGAGAAGAACCA-----ACACAACAGGGATTT--
-AGTTTCTTGGTTTAATAAGTTT-------TGAGTTATTATCGTCAAAGAGTCCTAAGAGTG-----------------T
CCTTCC------AAAGAGATGTAAATATCGCAACAAAATTGGTCAGTTTTTGCATC---CATCGTCGATCTACTGCTACT
TCCTCTTCTGTCTGTCCAAG-----AAGAAGCAGATGCACGGGTCAAGGATTCAGTTACAAGAATCAGCAAGAGAAAGAC
GCGTTTGTCCTCGACATAGTCGCAATGATGCTCCCCAGCTAAGGATGAGCGTGT-----GTACAGGCTGCAAAGCACT--
--CTAAGCTCACAAGAACCCTGCATCG----ACTTGGTTTTTGGTGATGAAAAAGGAGCACCC---GGCATGTGACAGTT
GGTTGATAGGTCTGCATCACAGCCAAAGCAAATGGTATCTTG-----GGGGGTCAAAGATGCTGATTCCGCCAATTATGA
TCCACTACTTCATTGTC----AGTAACTAAAATCAGTAACTGTATGAGTATAATC-AAAATGTTTCAACAACTGTGAAGC
AGTGATGCATTATTATGCTTCATGTTCAAACATTTTTGTTTCTGGTCACATCG---------TTAC--------------
---ATGCTATATTGGTGGAAAACCACCAAGCTGCAAACACAGAGATACCTCAACATTTGGTGCAGCAGATGTATTATTCC
T---------------GGACCCTCTGTTTTCCCGGTATTGTGGAC-----CTCATGTCCTTCTCATAGAAGTGGGACCTA
GGATGATGA------------------CGTCAGTAGCAC-TTTGTATAGATCAGGACGCATGTCCCTGAATATACCCCAA
CAGCACGCTGTATATATCAGGAATTGATCTCGTCCAAGTCGAACTCTGCTGCAACCACCTCCTCGTCTTTGTCATTTGAA
AGCTTGACGAT
>chr5B_976
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---------------CACTTCACCACGCACGC-------GCGCGCATGGC----CGTCGGCGTGCGCCTACGGCCACGAC
GGCGGCCGCCG------------GCCACCGTCTATGGGTCCGTTCGACGACGACAACGACCGAGGCCGCCACTGTCCCAT
CTTCCACGACCAGTGTTGCATCATCCACGGCGTCGTCATGCCGCCTCCGCCTCCCCCTGCCCTGCCTCCTCCGCCGCCGC
CGCTCTTCGGC---------CTCCATTCGGGCCGCGCCAGCTCCAAGGCGGCAGCGTCCCGCCACCCTGGCCTCTGCACC
GAGGGCCTCGGCTCCGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGCCGGCATCGTGGCCGACGACGACGACATTGA
AGACTGCAAGACTCAGCAGCAGGGGCACTCCGACGACGACCAAGAG---GAGACGCCGGCGCCGGCAAAGGCAAGGGGCG
GCAAGAGGGTGTTCCCGCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGCAGTACCTGAGGGCGCAGCGTGGG
GGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCTGCCGGGAGGACGGCCGCCTCAA
GCTCCACTTTGCACACCCGGAGCAA--------------------------------------------------GATGA
TGATCAGGAATGCAACA-ACTAGGAGACTGCAAGAGCACTCAAAAGC------------CACAACAGAACAGGGTCCTAA
GAGTTTCTTGGTTTAATAAGTTTGTTTGATTGAGTTGTCATCGTCAAAGAGTCCTAAGAGTGCCATGGCCATGACACTGT
CCTTCCTAAACTAAAGAGATGTAAATATCGAAACAAAATTGGTCAGTTTTTGCATCCATCATAGTCAATCTACTGCTACT
TCCTCTTCAA---TCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGTTACAAGAATCGACAAAAGAAAGGC
GCGTTTGTCCTCGACATAGTTGCAACGATGCTCCCCAGCTAAGGATGAGCGTGT-----ATACAGGCTGCAAAGCACTCT
AGCTAGGCTCACAAGAACCCTGCCTGC----ACTTGGTTT-----GATGAAAAAGTAATACAG---CACATGTGACAGTT
GGTTGATAGGTCTACATTACAGCCAAAGCAAATGGTATATATATCTTGGAGGTCAAAGATGCTGATTCTGCCAATTATGA
TCCACCTATTGATTTTC----AGTAACTAAAATCAGTAACTGTAGGGGTACCACCT-AAATGTTTCAACAAATGCGATGC
AT-----CATTATTATATTGCTTTGATCCCTCATCTTCATACTTGTAGGAGCAAATATTCTCTTACATGACAGTATTTTA
TTAATGCTCTATTGGTGGAAAATCACCGAGTCGCAAACACGGGGATACGTTGCAAAGAGGCAAACCATTTCTTTTGCAGG
GGGAAGCTAGACTTACGGACCCTGTGTTTTCCCAGTATAGCATTCTGGAGTTCATGTCGTCTTCATAAAAGTGGAACCTA
GGATGATGATGATGTCTTGCCATCCAACGTCAGTAGCAC-TTTGTATAGATCAGGACGCCTGTCCCTGAATATCCCCCAG
CCGTGTCTCGTA--------GATTTGATCTCGTCCAAGTCAAACTCTGCCACGAGCACCTCCTCGTCTTTGTCATTTGCA
AGCTTCACGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------------S-------SS-S-SS-SSSSSS-----------S------------
S-----SSSSSSSS-SSSS-S-SSS-SSSSSSSSSSSSSSSSSS----S----S-----S---------------S----
-----SSSSSSSSS-------------S----------------------------------------S-----------
------------------SSS---S----------------------------S-------------S----S-----S-
----------------S----------------------------------------------------------S----
-------S--SS---------------------S----------------------------------------------
------------------------------------------------------------------------------S-
-----------------------------------S----------SSS-S-S---------------------------
----------------------S-----------------S---------------------------------------
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----------------------------SSSSSSSSSSSSSSSSSSSSSSSS----S--------S-------S----S-
-----------------S------------------S-----------------S---S--S----S-----------SS
S-------S------------S--SS-S---S--------------------S--------------------S--S---
----------------------------S------------------S--------------------------------
-----S-------------------------------------------------S------------------------
----------------------------------S-------------------SSSSS---------------------
---------------------------SSSS------------------------------SSSSS--------------
------S----S--------------------S---------------------------------------------S-
----------------SSSSS---S-S-----S--S----------------S-SS------------------------
----------------S-----------S-S--------------------S----------------SS---S-----S
--S------------------S-----------------------------------------S---S------------
---------------------------------------S---------------------------S----------S-
--------------------------------SS-----S----------------------------------------
--------------S------------S-----------------------------------------S----------
-------S---
>forward_455
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-----------------------------------CACTCCCTCCGTCCGAAAAA-------------------------
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>reverse_2059
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----------------------------------------------------------AGTACAGGCTGCAAAGCACT--
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