>input_sequence_74546
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-----------------------------------------------ATGCTCCCGGCCTCGCACCCGCTGCTCTACGCG
TGCGCCTTCCGCGACAGCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCTGGGGGCGCCGGCACCGGCGACCTGCC
GGCGCTCGCCGCCGCGCTCGCTGCTTCGGCGCCTCCGCACCACTGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACG
CGCTTCTCCTCGGCCCGCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTC
CTCCGCCGCCTGCGATGCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGGCTGGCGCTCCGCCTGCCGTTCCCCAA
CGAGGAGGCGCTCGCGCGCGAGGCTGCTGACGTCGCCGCCGTTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTG
AGCTCGCGCAGGGGACGCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCAGGCGTGGAGGCGCCAGCTCTGGCTG
ATCGTCCTCGTGGATCTCGTCCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGG
CCGGTAA-------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G190000
TCAGAGTTCAAGTGCGGCTCTAACTTGTCCTTGAGGATGTTGATGAGCTTGTTGATGCCCATCTGAATGAAGTTCCACAC
GCCCTCCAGATCAATGGTCTTGCAATCCTGCCCTTGCCCCGCAAGTCGCCATCGCTGCCGTAGTCGCCGGTTCTCTTCTT
GTTGGCGGCCGCAAACCCTAGAGGAGGTTGGCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGATTATGATTAGGGGTTTTGTCTCTAACGTTTCAGTTGGAGAA
AAGTTCGCTTT-GCTTCTGTGGGGTCCAGGAAGGAGGAGCGAACGGGAGGGGCGTCAAGCGGACACGGGGTTCACTTTTG
CCGCAGATCTTAACAACATATGA--TCAATCAAACGACAGAAAAAATCAGGATGACGTGAAAGCACGAAAGGGCAGAGAA
ATCAGATGATGAAGATGAAGATGAACTATTTAGATATTATAGATGAGACCCGAGAGACAAGATGGTGAAGACGTCCGATG
CCTAGACAGATCCAAAAACATCATTTTAGATATCCAGG---AAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAAA
ACTCAAATCAAACAACGCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCC-CTTCGCCCAGCCTCCCGG
CGAATCCAAATCCCTGAGAAATCTCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCG
TGCGCCTTCCGCGACAGCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCTGGGGGCGCCGGCACCGGCGACCTGCC
GGCGCTCGCCGCCGCGCTCGCTGCTTCGGCGCCTCCGCACCACTGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACG
CGCTTCTCCTCGGCCCGCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTC
CTCCGCCGCCTGCGATGCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGGCTGGCGCTCCGCCTGCCGTTCCCCAA
CGAGGAGGCGCTCGCGCGCGAGGCTGCTGACGTCGCCGCCGTTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTG
AGCTCGCGCAGGGGACGCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCAGGCGTGGAGGCGCCAGCTCTGGCTG
ATCGTCCTCGTGGATCTCGTCCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGG
CCGGTAAATAGATAAAAAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAGAGTGTAG
ACTGTAGAACCAGAGCCATGGTTAGAAACACAGTGAGTTAGTGTGAACAAATAATGGTTGTGAATTGGGCTCATAAAGGC
TGAGCAAAACTATGGCCTGAATCTCTTCTACTAAAGGTAGAGGCCAAGTGTGTGTTCAGCCGTTGAGGGTGGGAGGGTGG
GGTTCTGAATTCATGAAGTTTGTGTCAGTTGCGTTGGAGGATCTGGGCACAGTTTCAGATATTGTGAGATGGCTTGCAAG
TACTCCCTCCGTCCGGAAATACTTGTCGGAGAAATGCATAAAAATGGATTTATCTAGAATTAAAATACGTCTAGATACAT
TCATTCCTTTGACAAGTATTTCCGGACGGAGGG-----------------------------------------------
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----------------AGTATGATCATGAAATGCTAAGACGGGCAACACAACGTGTGCAAGTTGGCGGATTCGGCTTTTA
TCTTGTGTTACACACAAATATACAAATCTGTTGCATCTCTTGCTTCAACAGTTTGTGTTTCCTGAAAACATCATGCAGTT
TTCTTTCTTCTTGTGGAACATCAAGTAGTTGAGGAGGCTGTGCTCCAAGTTGCCAGGGTTAGGTTTCTAGATTGGACTAT
TCTTCATTTGACTGGATATGATTGTAGGATCTGACAATAATACAGAAGCTACATATATTTAGGTCAAGTATATATTGAGA
TATTTATTTTTGATTATACCAAAATTGATTTTAATGAAACCTTTTCATACAAGCTTGTGTAGTTCAATTTCAGTATCAAG
CTTATTTAATTTATGTTACCCATATCGAAAACATTTTCTTTACTTATAACATGTGACGAGAACATAATAATATAAGCAGT
GAAAGTTATAGAGCTAACAACGTTATCAGTTCAGTGACATAGTTAACAACTTAAATTAATATATGATCATTGTATAAAGA
TT-TGTGAAATCCTGGTTACCAGATCGTGCA
>chr3D_50
-------------------------------------------------TGTTGATGCCCATGTGCATGAAGTTTCACAC
GTCCTCCAGATCAATGGTCTTGCAATCCTGGCCTTGCCCCGCAAGTCGCCATCGCCGCCGTAGCCGCCGGTTCTTTTTCA
-TTGGCGGCCACAAACCCTAGAGGAGGTTGGGTTTAGTTGCGTCCATCGCTGTGTGGGGCTTGCGTCGATTGCGGAAGAG
AGAGGGAGAGAGAGGGAGAGAGAGAGAAAGAGATAGATAGAGAGAAAGAGAGAGATGGTTGGGGTGGGTGTCGGGTGA--
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----------------------------------CCGGATTATGTTTAGGGGTTCTGTCTCTAATGTTTCAGTTGGAGAA
AAGTTCGCTTCCGCTTCTGCGGGGTCCAGGAAGGAGGAGCGAACGGGAGGGCCGTCAAGCGGACACGGG-TTCACTCTTG
CCGCAGATCTTAGCCACATATATGGTCAATCAAACGGTAAAAAATTAAGATA--ACGTGAAAGCACGAGAGAGCAGAGAA
ATCAAATAATGAGAATAAAT------TATTTAGATATTATAGATGAGACCCGAGAGACGAGAGGGTGAGGACGTCCGATC
CGTAGACAAATCCAAAAACACCATTTTAGATATCCAGGTGGAAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAAA
ACTCAAATCAAACAACGCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCC-CTTCGCCCAGCCTCCCGG
CGAATCCAAATCCCTGAGAAATATCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCG
TGCGCCTTCCGCGACAGCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCCGGAGGCGCCGGCACCGGCGACCTGCC
GGCGCTCGCCGCCGCGCTCGCTGCCTCGGCGCCTCCGCACCACCGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACG
CGCTTCTCCTCGCTCCGCCGCTCGCGCTCGCCGCGGTCTCTCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTC
CTCCGCCGCCTGCGATGCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGGCTGGCGCTCCGCCTGCCGTTCCCCAA
CGAGGAGGCGCTCGCGCGCGAGGCTGCTGACGTCGCCGCCGCTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCCG
AGCTCGCGCGGGGGACGCCCAAGCGGGAGCATGGAGCTCGCAGTGGCGCCGGGCGGGCGTGGAGGCGCCAGCTCTGGCTG
ATCGTCCTCGTGGATCTCGTGCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGG
CCGGTAAATAGATTAAAAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAGAGTGTAG
ACTGTAGAACCAGAGCCATGGTTAGAAACACAGTGGGTTAGTGTGAACAAATAATGGTTGTGAATTGGGTTCATAAAGGC
TGAGCAAAACTATGGCCTGAATCTCTTCTACTAAAGGGAGAGGCCAAGTGTGTGTTGAGCCGTTGAGGGTGGGAGGGTGG
GGTTCTGAATTCATGAAGTTTGTGTCAGTTGCATTGGAGGATCTGGGCACAGTTACAGATATTCTGAGATGCCTGCAAGT
ATGATCATTTTTTTTTAGAAAAGGAGGAATACCCCCGGCCTTTGCATCTGGACGATGCATACGGCCAATTTATTAATTAT
TAACACAAGACCTTACAAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAA
CTGATGAAGGGGCGCTGATGGTCTGGGCCTAATACCAAACAGACCTTGCAGCCAAACCTAACATCTAAGACCTGAGGTCC
CAACCAGGACGCCTGCCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGACGCCTGCCGGGTTTGAGGCCG
CCACAGCCACCCGCCACATATCCATCTTCAGAGCTGTACTGTTGCATCGGCCTTGCCCGGTCTCGCTGCCGCCGACGCCA
CCACGACGCCAAACAGCGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCG
CCAAGAGCCGCCGCCAAGAATATGTAGAACGAAACACCGCTCCACCGAAAGGGAGGCAGCACACCCCCACCCCTCACCTG
CAGACCCTTCCATCCGATCCCAATGTCCTTGGCGTCGCCTCCAGGAAGGTTACGGTGCACGGGGCGCCGCCGACGCCCGA
TCCGCATCGGATCTTGGGCTTTCACCCGGACATGGGTCGGAGTGGAGAGATGGTGCCCTCAGCAGCGCCCCAAAGGAGGA
AAGCGGCACCAAAAAGCGGCGTCGCCGCTGCCGGCCAGCCAAGGCGGCCAAGGTTTCCCCCGGACACCGATCTGCTCCAC
CAGAACACACCGCCGAATCGGGGACTGGGAAGGGATGCATGGAAGGGAAGGAGGCAATACCTCCAGATCTGGCACGCCTG
CGGCTCGCCGTCCTCACGGCCGAACCCTCAGGCACGCCGCACGCCACGCCAGCAGGGGCCGCCGCCGCTGGATCCGATGG
CCTCCGCGAAGAAGAAGCGCCGAAGACCCCGCCGCCACCTTCCTCGGCGCCCGCGCGGGCTTTCCCGGCGGTCGTCTCCG
GTGGCGGCGAGGGGGGTGGGGAGGTGGGGGGAGGCGGCGGGGGAAAACCCTAGACTCCCCCGAGTCGCCCTAGGGGCGAC
GCGAGGGACGGGAGGGAGGGACGGGAGGGACGCGAGGGACTGGTGGTTTCAGCGCTCAGTCGATTCTCTGGAAACTGTGT
CACGCCCAATTTCGAAAGTATGATCATGAAATGCTAAGACGGGCAACACAATGTGTGCAAGTCGGCGGATCTGGCTTTTA
TCTTATGTTACACACAAATATACAAATTCGTTGCATCTCTTGCTTCAGCAGTTTGTGTTTCCTGAAAACATCATGCAGTT
TTCTTTCTTCTTGTGGAACATCAAGTAGTTGAGGAGGCTGTGCTCAAAGTTGCCAGGGTTAGGTTTCTAGATTGGACCAT
TCTTTATTTGACTGGTTATGATTGTAGGATCTGACAA-AATACAGAAGCTACATATATTTAGGTCAAGTATATACTGAGA
TATTTATTTTTGATAATACCAAAATTGATTTTAATGAAACCTTTTCATACAAGCT-GTGTAGTTCAATTTCAGTATCAAA
CTTATTTAATTTATGTTACCCGTATCGAAAACATTTTCCTAACTTACAACATGTGACGAGAACATAATAATATAAGCAGT
GAAACTTATAGAGCTAAAAACGTTATCAGTTCAATGGCATAGTTAACAACTTAAATTA--ATATGATCATTGTATAAAGC
TTCTGTAAAATCCTGATTACCAGATCGTGCA
>chr3A_813
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---------------AAACACCATTTTAGATTTCCAT---GAAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAGA
ACTCAAATCAAACAACGCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCCTCTTCGCCCAGCCTCCCGG
CGAATCCAAATCCCTGAGAAATCTCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCG
TGCGCCTTCCGCGACAGCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCCGGGGGCGCCGGCACCGGCGACCTGCC
GGCGCTCGCCGCCGCGCTCGCTGCTTCGGCGCCTCCGCACCACCGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACG
CGCTTCTCCTCGCCCCGCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTC
CTCCGCCGCCTGCGATGCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGTCTGGCGCTCCGCCTGCCGTTCCCCAA
CGAGGAGGCGCTCGCGCGCGAGGCTGCTGACGTCGCTGCCGCTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTG
AGCTCGCGCGGGGGACGCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCGGGCGTGGAGGCGCCAGCTCTGGCTG
ATCGTCCTCGTGGATCTCGTGCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGG
CCGGTAAATAGATAAAAAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAAAGTGTAG
ACTGTAGAACCAGAGCCATGGTTAGAAACACAGTGAGTTAGTGTGAACAAATAATGGTTGTGAATTGGGTTCATAACGGC
TGAGCAAAACTATGGCCTGAATCTCCTCTACTAAAGG-AGAGGTCATGTGTGTGTTCAGCCGTTGAGGGTGGGAGGGTGG
GGTTCTGAATTCATGAAGTTTGTGTCAGTTGCGTTGGAGGATCTGGGCACAGTTACAGATATTGTGAGATGGCTGCAAGT
ATGATCA-------------------------------------------------------------------------
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--------------------------TGAAATGCTAAGACAGGCAGCACAATGTGTGCAAGTTGGCAGATCCGGCTTTTA
TCTTGTGTTACACACAAATATACAAATTCGTTGCATCTCTTGCTTCAGCAGTTTGTGTTTCC------------------
-----------------------AGTAGTTGAGGAGGCTGTGCTCAAAGTTGCCAGGGTTAAGTCTCTAGATTGGACCAT
TCTTCATTTGACTGGATATGATTGTAGGATCTGACAATAATACAGAAGCTACATATATTTAGGTACT-------TTGTGA
TATTTATTTTTGAT-ATACGAAAATTGATTTTGATGAAACCTTTTCATACAAGCTTGTGTAGTTCAA-TTCAGTATCAAA
CTTATTTAATTTATGTTACCCGTATCGAAAACATTTTCCTAACTTATAACATATGACGAGGACATAATAATGTAAGCAGT
GAAACTTAGAG--CTAACAACGTTATCAGTTCAATGACATAGTTAACAACTTAAATTAGTATGATTAGA-----------
TTCTGTAAAATCCTGATTACCAGATCGTGCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S--------S-----
-S----------------------------S------------------------S-------S----------S--SSS
S---------S--------------------S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------S---------S---------------
----------S--------S-------------------------------S-----------------S------S---
------------S-S------SS-------------SS-S----SSSSSSS-SS--------------S--S--------
----S--S----SS--S--SSSSSSS--------------------------------S---S-----S----------S
-S------S-----------S-----------------------------------------------------------
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-------------------------------------------S------------------------------------
------------S-------------------------------------------------------------------
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-----------------------------------------S--------------------------------------
---------S--------------------------------------------S-------------------------
--------------------S-----------------------------------------------------------
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---------------------------------------------------------------------S----------
-------------------------------------S------------------------------------------
------------------------------------------------------S-------------------SSS-SS
SSSSS-S-SSS-SSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSS-SS-SSSS-S--SSSSSS-SS-SSSS-SSS--
-S-SS-SSSSSSSS-SS-SS--SSSSSSS--SS-----------------------------------------------
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---------------------------------------------------S------------------S---------
---------------------------SS------------------S--------------------------------
---------------------------------------------S-------------------------------S--
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--------------S----------------------------------------------------------------S
---------------------S----------------S-S---------------------------------------
----S----------------------------S------------------------S--------------------S
------S--------S---------------
>forward_809
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---------------------------------------------------------------------GACGTCCGATG
CCTAGACAG-----------------------------------------------------------------------
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>reverse_1921
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TACTCCCTCCGTCCGGAAAT------------------------------------------------------------
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