>input_sequence_74543
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-------------------------------ATGCTCCCGGCCTCGCACCCGCTGCTCTACGCGTGCGCCTTCCGCGACA
GCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCCGGGGGCGCCGGCACCGGCGACCTGCCGGCGCTCGCCGCCGCG
CTCGCTGCTTCGGCGCCTCCGCACCACCGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACGCGCTTCTCCTCGCCCC
GCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTCCTCCGCCGCCTGCGAT
GCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGTCTGGCGCTCCGCCTGCCGTTCCCCAACGAGGAGGCGCTCGCG
CGCGAGGCTGCTGACGTCGCTGCCGCTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTGAGCTCGCGCGGGGGAC
GCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCGGGCGTGGAGGCGCCAGCTCTGGCTGATCGTCCTCGTGGATC
TCGTGCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGGCCGGTAA---------
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>chr3A_1_TraesCS3A01G159100
ATCAAATTCGTTGCATCAGAGAACTGACAG--ACACATACAAAACATAGGATAAATAATCTGAACACACAAAACGACATC
TACGCATTAGGGGAGCAGGCGAATCAGCTCATCGTCGCCCGAGCAACTGCGAGTAGTCGTGAGGGTGGTTCTGCGTGCAC
ATGTTGTATATCCAATCAGCGCAATAAAAAAGATAAACATGAGGCGCCAAGATCAACACCAGATCAGATAGAATCAGACC
TAGCCTAGGCATGGCCCGAAAGAGGCGGAGGCGACTTACGTGTAGAGCATTATGAGTCCTCAAATTTCAAGTGCGGTTCT
AGCTTGTCCTCGATAATGTCGATGAGCTTGTTGATGTCCATCTGCATGAAGTTCTACACATTCTCCAGATAAATGGTCTT
GCAATCCTACCCTTGCC----AAGTCGCCATCACCCCCCGTAGCCGCCGGTTCTCTTCTCTTTGGCGGTCACAAACCCTA
AAGGAGGTTGGGCTCAGTTGT--------CTGTGTGGGGCTTACGTCGATTGGGGAAGAG--------------------
--------------------------AGAGAGAGATGGTTGGGGGTGGGAGCGGGCAAA---------------------
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-----------------GATTATGATTAAGGGTTTTGTCTCTAACGTTTCAGATGGAG-AAAGTTCGCTTCCGATTCTGC
GGGGTCCAGGAAGGAGGAGCGAACAGGAGGGGCGTCAAGCAGACACGGGGTTCACTCTTGCCGCAGATCTTAGTAACATA
T--GGTCAATCAAATGACAAAAATAATAATTTAAAATGATGTGAAAGCACGAGAGGTTAGAGAAATCAGAT------GAT
GAAAATAAACTATTTAGATATTATAGATAGGATTTCCG-----------------------------------------A
AACACCATTTTAGATTTCCAT---GAAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAGAACTCAAATCAAACAAC
GCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCCTCTTCGCCCAGCCTCCCGGCGAATCCAAATCCCTG
AGAAATCTCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCGTGCGCCTTCCGCGACA
GCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCCGGGGGCGCCGGCACCGGCGACCTGCCGGCGCTCGCCGCCGCG
CTCGCTGCTTCGGCGCCTCCGCACCACCGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACGCGCTTCTCCTCGCCCC
GCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTCCTCCGCCGCCTGCGAT
GCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGTCTGGCGCTCCGCCTGCCGTTCCCCAACGAGGAGGCGCTCGCG
CGCGAGGCTGCTGACGTCGCTGCCGCTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTGAGCTCGCGCGGGGGAC
GCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCGGGCGTGGAGGCGCCAGCTCTGGCTGATCGTCCTCGTGGATC
TCGTGCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGGCCGGTAAATAGATAAA
AAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAAAGTGTAGACTGTAGAACCAGAGC
CATGGTTAGAAACACAGTGAGTTAGTGTGAACAAATAATGGTTGTGAATTGGGTTCATAACGGCTGAGCAAAACTATGGC
CTGAATCTCCTCTACTAAAGG-AGAGGTCATGTGTGTGTTCAGCCGTTGAGGGTGGGAGGGTGGGGTTCTGAATTCATGA
AGTTTGTGTCAGTTGCGTTGGAGGATCTGGGCACAGTTACAGATATTGTGAGATGGCTGCA-------------------
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AGTATGATCATGAAATGCTAAGACAGGCAGCACAATGTGTGCAAGTTGGCAGATCCGGCTTTTATCTTGTGTTACACACA
AATATACAAATTCGTTGCATCTCTTGCTTCAGCAGTTTGTGTTTCC----------------------------------
-------AGTAGTTGAGGAGGCTGTGCTCAAAGTTGCCAGGGTTAAGTCTCTAGATTGGACCATTCTTCATTTGACTGGA
TATGATTGTAGGATCTGACAATAATACAGAAGCTACATATATTTAGGTACT-------TTGTGATATTTATTTTTGAT-A
TACGAAAATTGATTTTGATGAAACCTTTTCATACAAGCTTGTGTAGTTCAATT-CAGTATCAAACTTATTTAATTTATGT
TACCCGTATCGAAAACATTTTCCTAACTTATAACATATGACGAGGACATAATAATGTAAGCAGTGAAACTTAGAG--CTA
ACAACGTTATCAGTTCAATGACATAGTTAACAACTTAAATTAGTATGATTAGA-----------TTCTGTAAAATCCTGA
TTACCAGATCGTGCAAGCTTTGTT-GACTGTCAGACCCTACGCTCAGTACAGTGATCCTGGTGAATGTGCCTGTTCGATA
TCATGCCAAGTGCTTTAGGTGAGCTAAAATGCGGGGCTGTTGTGTGCGTCTGTCTTGCAGCTGTTCTGTCGCCATCAGCA
GCAAAAATGATGCTGGCTTGTGTAGATATGCTCTC
>chr3B_1
ATCAGATTCGTTGCATCAGAGAACTGACGGCCACACATACAAAACAGGGGATAAATAATCTGAACACACAAAACGACATC
TACGCATTCCGGGAGCAGGCGAATCAGCTCGCCGTCGCCCGAGCTACTGCGAGTAGTCGTGAGGGCGGTTCTGCGTGCAC
ATGCTGTATATCCAACT-GCGCAATAAGAAAGACAAACAGGAGGCGCCAAGATCAGCACTAGATCAGATAGAATCAGACC
TAGCCTAGGCATGTCCAAAGAGAGGCGGAGGCGACTTACGTGTAGAGCATTACGAGTCCTCAGAGTTCAAGTGCGGCTCT
AACTTGTCCTTGAGGATGTTGATGAGCTTGTTGATGCCCATCTGAATGAAGTTCCACACGCCCTCCAGATCAATGGTCTT
GCAATCCTGCCCTTGCCCCGCAAGTCGCCATCG-CTGCCGTAGTCGCCGGTTCTCTTCTTGTTGGCGGCCGCAAACCCTA
GAGGAGGTTGGCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCGGATTATGATTAGGGGTTTTGTCTCTAACGTTTCAGTTGGAGAAAAGTTCGCTTT-GCTTCTGT
GGGGTCCAGGAAGGAGGAGCGAACGGGAGGGGCGTCAAGCGGACACGGGGTTCACTTTTGCCGCAGATCTTAACAACATA
T--GATCAATCAAACGACAGAAAAAATCAGG----ATGACGTGAAAGCACGAAAGGGCAGAGAAATCAGATGATGAAGAT
GAAGATGAACTATTTAGATATTATAGATGAGACCCGAGAGACAAGATGGTGAAGACGTCCGATGCCTAGACAGATCCAAA
AACATCATTTTAGATATCCAG---GAAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAAAACTCAAATCAAACAAC
GCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCC-CTTCGCCCAGCCTCCCGGCGAATCCAAATCCCTG
AGAAATCTCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCGTGCGCCTTCCGCGACA
GCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCTGGGGGCGCCGGCACCGGCGACCTGCCGGCGCTCGCCGCCGCG
CTCGCTGCTTCGGCGCCTCCGCACCACTGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACGCGCTTCTCCTCGGCCC
GCCGCTCGCGCTCGCCGCGGTCTCGCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTCCTCCGCCGCCTGCGAT
GCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGGCTGGCGCTCCGCCTGCCGTTCCCCAACGAGGAGGCGCTCGCG
CGCGAGGCTGCTGACGTCGCCGCCGTTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCTGAGCTCGCGCAGGGGAC
GCCCAAGCGGGAGCATGGAGCTCGCGGTGGCGCCGGGCAGGCGTGGAGGCGCCAGCTCTGGCTGATCGTCCTCGTGGATC
TCGTCCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGGCCGGTAAATAGATAAA
AAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAGAGTGTAGACTGTAGAACCAGAGC
CATGGTTAGAAACACAGTGAGTTAGTGTGAACAAATAATGGTTGTGAATTGGGCTCATAAAGGCTGAGCAAAACTATGGC
CTGAATCTCTTCTACTAAAGGTAGAGGCCAAGTGTGTGTTCAGCCGTTGAGGGTGGGAGGGTGGGGTTCTGAATTCATGA
AGTTTGTGTCAGTTGCGTTGGAGGATCTGGGCACAGTTTCAGATATTGTGAGATGGCTTGCAAGTACTCCCTCCGTCCGG
AAATACTTGTCGGAGAAATGCATAAAAATGGATTTATCTAGAATTAAAATACGTCTAGATACATTCATTCCTTTGACAAG
TATTTCCGGACGGAGGG---------------------------------------------------------------
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AGTATGATCATGAAATGCTAAGACGGGCAACACAACGTGTGCAAGTTGGCGGATTCGGCTTTTATCTTGTGTTACACACA
AATATACAAATCTGTTGCATCTCTTGCTTCAACAGTTTGTGTTTCCTGAAAACATCATGCAGTTTTCTTTCTTCTTGTGG
AACATCAAGTAGTTGAGGAGGCTGTGCTCCAAGTTGCCAGGGTTAGGTTTCTAGATTGGACTATTCTTCATTTGACTGGA
TATGATTGTAGGATCTGACAATAATACAGAAGCTACATATATTTAGGTCAAGTATATATTGAGATATTTATTTTTGATTA
TACCAAAATTGATTTTAATGAAACCTTTTCATACAAGCTTGTGTAGTTCAATTTCAGTATCAAGCTTATTTAATTTATGT
TACCCATATCGAAAACATTTTCTTTACTTATAACATGTGACGAGAACATAATAATATAAGCAGTGAAAGTTATAGAGCTA
ACAACGTTATCAGTTCAGTGACATAGTTAACAACTTAAATTAATATATGATCATTGTATAAAGATT-TGTGAAATCCTGG
TTACCAGATCGTGCAAGCTTTGTTTGACTGTTAGACCCTACGCTCAGTACAGTGATCCTGGTGAATGTGTCTGTTCGATA
TCATGCCAAGTGCTTTAGGTGAGCTAAAATGCGGGGCTGTTGAGTGCGTCTGTCTTGTAGCTGTTCTGTCGCCATCAGCA
GCAAAAATGATGCTGGCTTGTGTAGATATGCTCT-
>chr3D_1
ATCAGATTCGTTGCATCAGAGAACTGACAGACACACATACAAAACAGGGGATAAATAATCTGAACACACAAAATGACATC
TACGCATTAGGGGAGCAGGTGAATCAGCTCACCGTCGCCCGAGCTACTGCGAGTAGTCGTGAGGGTGGTTCTGCGTACAC
ATGTTGTATAACCAACT-GCGCAATAAAAAAGACAAACAGGAGGCACCAAGATCAGCACCAGATCAGATAGAATCAGACC
TAGCCTAGGCATGGCC------AGGCGGAGGCGACTTACGTGTAGAGCATTACGAGTCCTCGGAGTTCAAGTGCGGCTCT
AGCTTGTCCTCAAGGATGTTGA------------TGCCCATGTGCATGAAGTTTCACACGTCCTCCAGATCAATGGTCTT
GCAATCCTGGCCTTGCCCCGCAAGTCGCCATCG-CCGCCGTAGCCGCCGGTTCTTTTTCA-TTGGCGGCCACAAACCCTA
GAGGAGGTTGGGTTTAGTTGCGTCCATCGCTGTGTGGGGCTTGCGTCGATTGCGGAAGAGAGAGGGAGAGAGAGGGAGAG
AGAGAGAAAGAGATAGATAGAGAGAAAGAGAGAGATGGTTGGGGTGGGTGTCGGGTGA----------------------
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--------------CCGGATTATGTTTAGGGGTTCTGTCTCTAATGTTTCAGTTGGAGAAAAGTTCGCTTCCGCTTCTGC
GGGGTCCAGGAAGGAGGAGCGAACGGGAGGGCCGTCAAGCGGACAC-GGGTTCACTCTTGCCGCAGATCTTAGCCACATA
TATGGTCAATCAAACGG------TAAAAAATTAAGATAACGTGAAAGCACGAGAGAGCAGAGAAATCAAATAATGAG---
---AATAAATTATTTAGATATTATAGATGAGACCCGAGAGACGAGAGGGTGAGGACGTCCGATCCGTAGACAAATCCAAA
AACACCATTTTAGATATCCAGGTGGAAGAAGCATTCAAAAGAATTTTAGTACCCATTCCACAAAACTCAAATCAAACAAC
GCTCCAGTCTGGCTTCTTCCACCTCCTGTCCTTGTGCAGTCCCCC-CTTCGCCCAGCCTCCCGGCGAATCCAAATCCCTG
AGAAATATCTCGCGCCGCCTAGCTGCCTCGGATGCTCCCGGCCTCGCACCCGCTGCTCTACGCGTGCGCCTTCCGCGACA
GCGCCCTCGTCGCCGAGCTCGCCCACGACCCGGACGCCGGAGGCGCCGGCACCGGCGACCTGCCGGCGCTCGCCGCCGCG
CTCGCTGCCTCGGCGCCTCCGCACCACCGCTACGTCACCCACTCCACGGCGGGGCGGGCGCACGCGCTTCTCCTCGCTCC
GCCGCTCGCGCTCGCCGCGGTCTCTCTCGCGCCGCAGCTCCCGGCGTCCCACCTCCTGCTCTTCCTCCGCCGCCTGCGAT
GCCTCCCCGAGTTCAGGATGCGCGAAGAGATGGCGCGGCTGGCGCTCCGCCTGCCGTTCCCCAACGAGGAGGCGCTCGCG
CGCGAGGCTGCTGACGTCGCCGCCGCTGAGGCCGAGGCGGAGGAGGCGACGCGGAGGGAGGCCGAGCTCGCGCGGGGGAC
GCCCAAGCGGGAGCATGGAGCTCGCAGTGGCGCCGGGCGGGCGTGGAGGCGCCAGCTCTGGCTGATCGTCCTCGTGGATC
TCGTGCTCCTCGGTGTACTCTTCGCGGCCTGGCTCGCCGTGTGCAGGGGTTTCAGCTGCATTGGCCGGTAAATAGATTAA
AAAAAGGTATAGACGTGCACATCATTTATCTCTCGCTTTATTGGTTCCAATGTGGAGAGTGTAGACTGTAGAACCAGAGC
CATGGTTAGAAACACAGTGGGTTAGTGTGAACAAATAATGGTTGTGAATTGGGTTCATAAAGGCTGAGCAAAACTATGGC
CTGAATCTCTTCTACTAAAGGGAGAGGCCAAGTGTGTGTTGAGCCGTTGAGGGTGGGAGGGTGGGGTTCTGAATTCATGA
AGTTTGTGTCAGTTGCATTGGAGGATCTGGGCACAGTTACAGATATTCTGAGATGCCTGCAAGTATGATCATTTTTTTTT
AGAAAAGGAGGAATACCCCCGGCCTTTGCATCTGGACGATGCATACGGCCAATTTATTAATTATTAACACAAGACCTTAC
AAAGTCGTACAACAGTAAGACCAAAGCCACCATCTTCGCAACCTCTGTCGCTACTCCTATCTAACTGATGAAGGGGCGCT
GATGGTCTGGGCCTAATACCAAACAGACCTTGCAGCCAAACCTAACATCTAAGACCTGAGGTCCCAACCAGGACGCCTGC
CGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGACGCCTGCCGGGTTTGAGGCCGCCACAGCCACCCGCCA
CATATCCATCTTCAGAGCTGTACTGTTGCATCGGCCTTGCCCGGTCTCGCTGCCGCCGACGCCACCACGACGCCAAACAG
CGTCGACCTCCTGCGCGTGTCCGTCACCACACATCTGACGCCAAGCCTCCGCTGCTCCATGCCGCCAAGAGCCGCCGCCA
AGAATATGTAGAACGAAACACCGCTCCACCGAAAGGGAGGCAGCACACCCCCACCCCTCACCTGCAGACCCTTCCATCCG
ATCCCAATGTCCTTGGCGTCGCCTCCAGGAAGGTTACGGTGCACGGGGCGCCGCCGACGCCCGATCCGCATCGGATCTTG
GGCTTTCACCCGGACATGGGTCGGAGTGGAGAGATGGTGCCCTCAGCAGCGCCCCAAAGGAGGAAAGCGGCACCAAAAAG
CGGCGTCGCCGCTGCCGGCCAGCCAAGGCGGCCAAGGTTTCCCCCGGACACCGATCTGCTCCACCAGAACACACCGCCGA
ATCGGGGACTGGGAAGGGATGCATGGAAGGGAAGGAGGCAATACCTCCAGATCTGGCACGCCTGCGGCTCGCCGTCCTCA
CGGCCGAACCCTCAGGCACGCCGCACGCCACGCCAGCAGGGGCCGCCGCCGCTGGATCCGATGGCCTCCGCGAAGAAGAA
GCGCCGAAGACCCCGCCGCCACCTTCCTCGGCGCCCGCGCGGGCTTTCCCGGCGGTCGTCTCCGGTGGCGGCGAGGGGGG
TGGGGAGGTGGGGGGAGGCGGCGGGGGAAAACCCTAGACTCCCCCGAGTCGCCCTAGGGGCGACGCGAGGGACGGGAGGG
AGGGACGGGAGGGACGCGAGGGACTGGTGGTTTCAGCGCTCAGTCGATTCTCTGGAAACTGTGTCACGCCCAATTTCGAA
AGTATGATCATGAAATGCTAAGACGGGCAACACAATGTGTGCAAGTCGGCGGATCTGGCTTTTATCTTATGTTACACACA
AATATACAAATTCGTTGCATCTCTTGCTTCAGCAGTTTGTGTTTCCTGAAAACATCATGCAGTTTTCTTTCTTCTTGTGG
AACATCAAGTAGTTGAGGAGGCTGTGCTCAAAGTTGCCAGGGTTAGGTTTCTAGATTGGACCATTCTTTATTTGACTGGT
TATGATTGTAGGATCTGACAA-AATACAGAAGCTACATATATTTAGGTCAAGTATATACTGAGATATTTATTTTTGATAA
TACCAAAATTGATTTTAATGAAACCTTTTCATACAAGCT-GTGTAGTTCAATTTCAGTATCAAACTTATTTAATTTATGT
TACCCGTATCGAAAACATTTTCCTAACTTACAACATGTGACGAGAACATAATAATATAAGCAGTGAAACTTATAGAGCTA
AAAACGTTATCAGTTCAATGGCATAGTTAACAACTTAAATTA--ATATGATCATTGTATAAAGCTTCTGTAAAATCCTGA
TTACCAGATCGTGCAAGCTTTGTTTGACTGTCAGACCCTACGCTCAGTACAGTGATCATGGTGAATGTGTATGTTTGATA
TCATGTCAAGTGCTTTAGGTGAGCTAAAATGCGGGGCTGTTGAGTGCGTCTGTCTTGCAGCTGCTCTGTCGCCATCAGCA
GCAAAAATGATGCTGGCTTGTGTAGATATGCTCT-
>SNPs
----S-----------------------------------------SS--------------------------------
-------------------------------S------------S-----------------------------------
---------------SSS---------------S-----S---------------S------------------------
----------------SS-S--------------------------------S---------S-S-----------S---
-------------SS----S----------------S-----------------S----S-S--------S---------
--------S-----------------------SS--S----------------------SS-------S-----------
S-----------S-------S---------------------S---------S---------------------------
--------------------------------------------SS--SSS----SS-S---------------------
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----------------------------S-----------------------S--------------------S------
------------------------S---------------S--------------------------------S------
--------------S----S---------S----S----S----------------SS----------------------
----------------------------SS--SSSSS-------------------------------------------
---------------S----S-----------------------------------------S-----------------
---------------------------------------------S----------------------------------
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-------------------------------------S------------------------------------------
--------------------S-----------------------------------------------------------
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--------------------------------------------------------S-----------------------
------------------------------------------------------------S-------------------
---------S-----------------S--S-------------------------------------------------
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------------------------S----S--------------------S-----------------------------
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---------------------------------------------S--S-------------------------------
------------------------------------------------SSS----------S------------------
---S------------S---------------------------------------------------------------
------------------------------------S-------S----------S----------------S-------
------------------------------------------S---SSSSSS----------------------------
---------------------------------------------------------------------S----------
------------------------------------------S-------------------------------------
----------------------------------S
>forward_216
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------------------------------------ACATGAGGCGCCAAGATCAA------------------------
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>reverse_2061
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------------------------------------------------------------CGGCTGAGCAAAACTATGGC
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-----------------------------------
