>input_sequence_74518
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-ATGGCGGCGAAGAAGCCGAGTAGTGCT------ATCGACATGGCGGAGCTGGACCCGGTGCTGCACGGGGTGGGCTTCG
AGATGCAGGAGGTGTCGCCGTCGCTGCTCTCCGGCCGGCTCCCGGTCACGGAGCGCTGCTGCCAGCCGTTCAAGGTGCTG
CACGGCGGCGTGTCGGCGCTGGTGTCGGAGGGCCTGGCCAGCATGGGCGCGCACATGGCGTCCGGCTACCGCCGCGTCGC
CGGCGTGCACCTCGCCATCAACCACTTCCGCAGCGCCGCCCTCGGCGACGTCGTCCTCGCGCGCGCCGTCCCCGTCCACC
TTGGACGCTCCACCCAGGTCTGCGCCCTCATCGATCGGCTGGCGACCTTGCT---------CTAGCTTGCTTGCTTGCTC
A---ATCGGACATGGAACTGGATT-------------------------TGGATAGGTGTGGGAGGTGAAGCTGTGGAAG
ATGGACCCGTCGGAGGAGGGGAAGAAGGGCCCGCAGATCTCCGAGTCCAGGGTCACGCTGCTCTGCAACCTGCCCGTGCC
GGACAACCTGCACCACGCCGGCGACGCCCTCAAGAAGTACGCTGCCGCA------------GCAACGACGACAACCACCC
CCACCAGCAAACTGTAA---------------------------------------------------------------
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>chr3B_1_TraesCS3B01G087000
ACACCCCCTACACTCTCGGCTACATCAACATGGGCACAAAGGACTATCACCTCACTTGAGCAACTCGTTAGCTTGCCCTC
CAGTCCACGCATCCGCAATGCGACACTGTCCACGACGCCCCTCTGTTACTGTGGGGGGATGTTAGCCTATCGGCTGCTAT
TCTCTTCAGTCTGACCATCCGCAACACTCAGGTTGTCCGCAACGGTACCGCTACGTCTACGCCGCCGGGGAGGGGGTATG
GGTGGGATGTTAGAGATATATTTGGTATTTAGAGATTGTCCGGGATTAGATAAAAATTGTTTTCATCTTATCTCTAGGCA
GTTGTCTCTAGAAGGTGTCTTGTCCTTCAAATCTCGCGCTCAAGACTCGATAATACATCCATTATATTCGGCCAATCTAA
CCTCTCTTCTAACGGATCAGACCTGAACGAACGCCCGTACGTCACTTTGGAAGATTGTCCAAAGCAAAAGGAAATACACC
TGGAAATTTCGAGGAAACGAGGGCATCTTCTCCCTACCTACCCGGCACTCCACCAGTACTCGCGCTGCAGGCTGACTCGT
GGGTGGACCATCTGCCTGGGCTGATTTTATTTTAGGGGTGCCTGGGCTGATTTCTAGAACGTGTCCTCCAGATGTACTAC
TCCCTCTGTTTCTTTCTTTACGGAGGGAGTACTCTGCACTCTGCAGCCACTAATTTCACTTCGATATAAGAACTGTTGGT
GATTAGGATTAAGATAAACACTTGGTCTATGGTAATAGTAGTAGGAGTACTGTAGTAGCATGGTTGTTGGAGGTGATCGA
CCAACTACTAATGAAAAATTAAAAA--ATAAAAC-----GGACAGATGATTAGGTGACCACTG-----------------
----CCTCAGAACTCTTGTAGTAGTTATCAGTAATTATTGCAC-TGCACGGCTGACTCTGCCTCTGGCTCGCTGTCTGGC
TCTTCTT-CTAGCTACCATAGT-----------TTTTCTCCGTGAACACGAAGGGGAGGGGAATAATTAAGCGAGGCAGG
CATGGCGGCGAAGAAGCCGAGTAGTGCT------ATCGACATGGCGGAGCTGGACCCGGTGCTGCACGGGGTGGGCTTCG
AGATGCAGGAGGTGTCGCCGTCGCTGCTCTCCGGCCGGCTCCCGGTCACGGAGCGCTGCTGCCAGCCGTTCAAGGTGCTG
CACGGCGGCGTGTCGGCGCTGGTGTCGGAGGGCCTGGCCAGCATGGGCGCGCACATGGCGTCCGGCTACCGCCGCGTCGC
CGGCGTGCACCTCGCCATCAACCACTTCCGCAGCGCCGCCCTCGGCGACGTCGTCCTCGCGCGCGCCGTCCCCGTCCACC
TTGGACGCTCCACCCAGGTCTGCGCCCTCATCGATCGGCTGGCGACCTTGCT---------CTAGCTTGCTTGCTTGCTC
A---ATCGGACATGGAACTGGATT-------------------------TGGATAGGTGTGGGAGGTGAAGCTGTGGAAG
ATGGACCCGTCGGAGGAGGGGAAGAAGGGCCCGCAGATCTCCGAGTCCAGGGTCACGCTGCTCTGCAACCTGCCCGTGCC
GGACAACCTGCACCACGCCGGCGACGCCCTCAAGAAGTACGCTGCCGCA------------GCAACGACGACAACCACCC
CCACCAGCAAACTGTAACTAGTACTAGTATCACCCCTCTCCGTGTATATTTACTACTCCATATAATTTTCCACTTCTTGT
TTGGTCGCCTATCGAGCGATTAAAAATCCAAGAGCAAACAAAACCCTATCAATTACTCCTTTTTTCTTTTGATTT-----
----------------------GACATTATCCTATCGGTTACTCCTTTTTCTTTGGCATTATCCTATCAGTTACTTTCAC
CAGCACTCCTTTGTAAACTAATATAAGAGTGTTTAAATCATTATTTTAATATTTTATAAACGCTTTTATATTAGTTTACG
GAGCGAGTACAATGTATCTGGTCTATGCAAGTATGCATTGCGTGTTGTTCTGTCCTCTCAAGGTATCAATCAAGCAGCCC
CTGAATGTTCTT---------CAGTGGGTTTAGTTCGTCTGTCCATTTCTCCATCGTACATAGTACATCTCTTTGATTGA
TCAATCAGTTGGATCAGTTACACCTTAGAAAGATCAACAGCATGAG-AAAAAAAAAGCAATGTTAAATAGAAGTA-----
-CTACTAGCGAGTATCGACTGCGCAACTAACAAATGAACCTAGCACTTCTCTCTCTGCATTTGCACGTAGTG-TTTTTTG
TTTCTTGAAACAAGACAAAAGTCTCATGATTTTTATTAGTTAAGAAGAAAAGAGTTGTCCACTTAATTTTAAAAAATCAG
GCAAAAAGCAAAG--CTAAATAACTGGCTATAGCTTCTGAAGAGTCCACCATTAAAGATATGCACTTTAATGCTGAAATG
AAAACGGCGCTAAGAGCATGGTTAATAATAGAGCCAACAATCAGCTATAAGGAGTTGCCATGTCATCTATAGCCAATCTG
ATAGCCGGCATGTACAATAGTACTCCCTCCGAAAACTATACTCCTGTTTATGAATAGGCATGTACAATACTTTCCGCTCC
GTTTTCATCCCTATTTGGATTGATCCTTGGTCTCCATGGAGATCGCGGCGCTGCTAGCCACTTCGCCCAAGTCCCATTAG
TAATAAGTAGTAGGGGTGTGTCC
>chr3D_747
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--------------------------CTACGGTAGAAGTAGTAGTAGTACTGTAGTGGCATGGTTGTTGGAGGTGATCGA
CCAACTACTAATGAAAAAAAATAAAAAATAAAATATAACGGAGAGATGATTAGGACATTGAAGACTTTGAATGATCCAAC
CACTGCTCAGAACTCTTGTAGTAGTTATCAGTAATTATTGCACCTGCACGGCTGGCTCTGCCTCTGGCTCGCTGTCTGCC
TCTTCTAGCTACCACCATAGTT-----------TTTTCTCTCTGAACACGAAGGGGAGGGGAATAATTAAGCGAGGCAGG
CATGGCGGCGAAGAAGCCGAGTAGTGC------CATCGACATGGCGGAGCTGGACCCGGTGCTGCACGGGGTGGGCTTCG
AGATGCAGGAGGTGTCGCCGTCGCTGCTCTCCGGCCGGCTCCCGGTCACGGAGCGCTGCTGCCAGCCATTCAAGGTGCTG
CACGGCGGCGTGTCGGCGCTGGTGGCGGAGGGCCTTGCCAGCATGGGCGCGCACATGGCGTCCGGCTACCGCCGCGTCGC
CGGCGTGCACCTCGCCATCAACCACTTCCGCAGCGCCGCGCTCGGCGACGTCGTCCTCGCGCGCGCCGTCCCCGTCCACC
TCGGACGCTCCACCCAGGTCTGCGCCCTCATCGATCGGCTGCCAACCTTGCT---------CTAGCTTGCTTGCTTGCTC
A---ATCGGACATGGAACTGGATT-------------------------TGGATAGGTGTGGGAGGTGAAGCTGTGGAAG
ATGGACCCGTCGGAGGAGGGGAAGAAGGGCCCGCAGATCTCCGAGTCCAGGGTCACGCTGCTCTGCAACCTGCCCGTGCC
GGACAACCTGCACCACGCCGGCGACGCCCTCAAGAAGTACGCTGCCGCA------------GCA---ACGACAACCACCC
CCACCAGCAAACTGTAACGAGCAGCAGCATCCTCTATGTGTATGTATATTTACTACTCCACATAATTTTCCTCTTCTTGT
TTGGTCGCCTGTCTAGCGATTAAAAATCTAAGAGCAAACAAA-CCCTATCAGTTGTTCCTTTTTTCTTTTGACATTACCC
TATCCTTTTTTCTTTTGTGGGGGACATTACCCTATCCGTTACTCCTTTTTCTTTGACATTATCCTATCAGTTACTTCCAC
TAGTACAATGTA--------------------------------------------------------------------
--------------TATCTGATCTATGCAAGTATGCATTGCGTGTTGTTCTGTCCTCTCAAGGTACCAATCAAGCAGCCC
CT---------T---------CGGTGGGTTTGGTTCATCTGTCCATTTC-CCATCGTAC--AGTACATCTCTTTGATTGA
TCAATCAGTTGGATCGGTTACACCTTAGAAAGATCAACAGGAAGAGC--AAAAAAAGCAATGTTAAATAGGAGTAGAAGT
ACTACTGGCAAGTATCGACTGCGCAACTAACAAACGAACCAA-CACTTCTCTCTATGCATTTGCGCGGAGTGTTTTTTTG
TTTCTTGAAATGAGACAAAAGTCTCGTCATTTTTATTAATTAAGAAGAAAAAAGTTGTCTAGTTAAT--TAAAAAAAGGG
GCAAAAAGCAAAGATCTAAATAACTGGCTATATAGTTTTTGAAGAGT---------------------------------
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>chr3A_756
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-----------------------------------TAGTAGTACTACTACTGTAGTGGCATGGTTGTTGGAGGTGATCGA
CCAACTACTAATGAAAAAATAAAAAAGATAAAAT-----GGACAGTTGATTAGGACATTGAAGACTTTGAATGATCCAAC
CACTCCTCAGAACTCTC---GTAGTTATCAGTAATTATTGCAC-TGCACGGCTGGCT----CTCTGTCTCGCTGTCTGCC
TCTTCTAGCTAGCTACCACTCTCGCAGAGTAGATTTTCTCCGCGAACACGAGGGGGAGGGGAATAATTAAGCGAGGCAGG
CATGGCGGCGAAGAAGCCGAGTAGTGCT------ATCGACATGGCGGAGCTGGACCCGGTGCTGCACGGGGTGGGCTTCG
AGATGCAGGAGGTGTCGCCGTCGCTGCTCTCCGGCCGGCTCCCGGTCACGGAGCGCTGCTGCCAGCCGTTCAAGGTGCTG
CACGGCGGCGTGTCGGCGCTGGTGGCGGAGGGCCTGGCCAGCATGGGCGCGCACATGGCGTCCGGCTACCGCCGCGTCGC
CGGCGTGCACCTCGCCATCAACCACTTCCGCAGCGCCGCCCTCGGCGACGTCGTCCTCGCGCGCGCCGTCCCCGTCCACC
TCGGGCGCTCCACCCAGGTCTGCGCCCTCATCGATCGACTTCTTGTTAACCGCCTGGCAACCTAGCTCGCTTGCTTGCTC
CTGCATCGGACATGGACCTGGATTGAAGGATTGATTGGAACCGTGGATTTGGATAGGTGTGGGAGGTGAAGCTGTGGAAG
ATGGACCCGTCGGAGGAGGGGAAGAAGGGCCCGCAGATCTCCGAGTCCAGGGTCACGCTGCTCTGCAACCTGCCCGTGCC
GGACAACCTGCACCACGCCGGCGACGCCCTCAAGAAGTACGCTGCCGCA------------GCA---ACGACCCCCACCC
CCACCAGCAAACTGTAACTAGCAGTACCATCTCTA-----CGTGTATATTTACTGCTCCAGATAATTTTCCTCTTCTTGT
CTGGTCGCCTATCGAGCGATTAAAAATCTAAGAGCAAACGAA-CCCTATCAGTC--------------------------
----------------------------------------ACTCCTTTTTCTTTGACATTATCCTATCAGTTACTTCCAC
TGGTAC--------------------------------------------------------------------------
------GTACAATGTATCTGATCTATGCAAGTGTGCATTGCGTGTTCTTCTGTCCTCTCAAGGTATCAATCAAGCAGCCC
CT---------TAATGTTCTTCAGTGGGTCTAGTTCATCTGTCCATTTC-CCATCGTAC--AGTACATCTCTTTGATTGA
TCAATCAGTTGGATCAGTTACACCTTAGAAAGATCAACAGCATGAGCAAAAAAAAAGCAATGTTAAATAGAAG-------
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>chr5A_995
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---------------------------------------------------------------------------GCAGC
CATGGCGGCGGCGAAGCCCGGTAGTAGTAGCGACATCGACACGGCGGAGCTGGACCGGGTGCTACACGCGGTGGGCTTCC
AGATCGAGACGGTCTCCCCCGCGCTGCTCGCCGGGAGGCTCCCCGTCACGGAGCGCTGCTGCCAGCCGTTCAAGGTGCTG
CACGGCGGCGTGTCGGCGCTGGTGTCTGAGGCGCTGGCCAGCATGGGCGCGCACATGGCGTCGGGCTACCGCCGCGTCGC
GGGCGTGCACCTCAGCATCAACCACTTCCGTAGCGCCGCCCTCGGCGACGTCGTGCTCGCCCGCGCCGTCCCCGTCCACC
TCGGCCGCTCCACGCAGGTCTGTCTGCAGTCTGCACTGGACTCCGAACCTAATCGT---------CTAGCTATTCTCCCT
CTGGCTCGGACATGCATGGGATAATTCAGAATCAATTC----------------AGGTGTGGGAGGTGAAGCTGTGGAAG
ATGGACCCGTCGGCGGAGATGAAGAAGGGGCCGCAGATCGCCGAGGCCAAGGTGACGCTGCTCTGCAACCTGCCCGTGCC
GGACAACCTCCACCACGCCGGCGACGCCCTCAAGAAGTACGCCGCCGATGGCGCTGCACCTGCA---CCAACCACCACCG
CCACCAGCAAACTGTAA---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S----S---------S-----------S-----------------------
------------------S--------------S--------------------SS-SSSSS------------------
------------------------------------------------------S-----------------------S-
------S-----------SSS-----------------------------------------------------------
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-S---------------------------------------S-S------------------------------------
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----------------------------------------------------------------SSS-------------
---------------------S-S---S---S--SS-S-S--------------------S----------S--------
----------------------------S-------------S--------S--SS----------------SS------
-----------------------------S------S------------------S--------------------S---
S--S--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------S-----------------------------------------------------------
--SSSSSSSSS-------------------------S------------S---------SS-------------------
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------S--S------------------------S-----S-S-----------S---------S--S------------
----------SS-------------S-S----------S------------S-------S-S-----SS-------SSS-
--------------------------------SSS-S-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_81
-------------------------------------------------------------AACTCGTTAGCTTGCCCTC
C-------------------------------------------------------------------------------
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>reverse_1402
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-----------------------------------------GCGACCTTGCTCTAGCTTGC-------------------
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>forward_185
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-----TCAGTCTGACCATCCGCAAC-------------------------------------------------------
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>reverse_2485
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----CGGCGCTAAGAGCATGGTTA--------------------------------------------------------
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