>input_sequence_74480
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-------------------------------------------------ATGAAGGTCAAAACGAAGATCAGCAAAGCTG
CCGAGTTCTTGAGGAAGGCGGTGCGGGCGCTGAGGGGCAGGGCTGGCGTCCTCAGGGCGCGGCTCCTCTTCCTCGCCTCG
TTCCGCCACAGGACGGCGATGGTCGGCACCGTGTCGCGCCACCTCCGCGCCCTCCTGCCGGGCCGCCAGAGAGACCCGGT
GCACGACCACCGCAAGGTCCACGCCTCGTCGACGATGGCGGCGGAGGAGGACGGGCAGGCCGCGATGCATGGAGTCGACG
TCCCAGGCCTCTCCGAGCTGTTGCAAGAAGTGGTCGGCGACGACGATGACGGCCACTACGGCTACCCAGACTGGACGCAC
TCACTGTTCGACGACAACGATGACGACTGCAGCCTCCAGGAGGGCGACGATGTCGACGAGGAGGAACGCGGTGGTGGCGC
GGAGGCAATGGAGGAAGATCGGCTGCCTGACGACGAGCCGTCGGTGATGGACGTCATCAGGAGGTGCAGGGAAGGGGACG
GAAAGGAGTTCAACATCAAGGAGGAGATCGACCACGCCGCTGACATGTTCATACGGCGGGTCCGCAGCCGAATGAACAAC
CGGAGCTTCTAG--------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G265500
TTTTCTGGGCTCATGAGCTGACTTTCATAGAAGAAAATGCTACAAAGCTGGGCGGGCCATGGCCCATGTAGCCTTGCTGT
AGCTCCGCCACTGCTGGGGACTATGAAGACACCGGAACAGATGCA-TTTTTGATGGGGAACGACCTTCGGTCTCGCATCT
CGTGT-GTCCATAAAAGAAGACATCCGCCTCTGAG------CCAGTGCCGGCGCCAGTGATTGGCCACTATGTTACCCAA
GAGATAGTTTTTCATATTTTTTGTTACGGCTGACCAACCCTTGTCCCTCAGCTTTGGTCTCCTAAGCTCATGCCAGCTCA
TGTAGGTGATGCTCATGTAGCCGCTCCTTGTACTCATTCTTCTCTCCTATCAATGCAATGATATTCAATCTTTGCGTATT
CGTGAAAAAAAAAGCTAGAGATTTTTGTTTGTCAATGAGAAATATTCAGAGTTTGGGTGGTTTTACACAAAAGTACACGG
ATTTCGTTATAATGGATGGAGGATGTTTGAAATACTATATTTTCTTTTTCTTTCAAAAATATCAAAGTATTTCCCAACTT
TCTAGAGTTGGATATAGATGTAGTTTGTATATAGAGTGGACATCCTCACCCGAAAGGTAAAATGCATTCCTGAAGTGCAC
TCCTCAAAAAGAGCTTTTGGTCCATAGAAGAGTTTGATTGGGCAGTGTCTCTCCTCAAAAAGAGCTTTTGCTTTGTCGAG
CTCCCAAGTTTCTTGGTACCTTTCCTTCTTTTGACCTTCCCGGTTACCCTGAGTTGGCTAGCTGCCTGCATCTATAAATA
ATTGAGCTCCCGTGTCCTTAAAACAAGGCACATGTCCCATGCATCAACACTTCAGTCTCGCCATTACCAGTACCACACAC
GCACTCGTTAATTGCAATTGATAACCAGCAGCACCAATTTGTTCTCTCTTGTCCGCATTCCTGCACTCGCTAAAGAACTA
CT-GTAGCTAGGTAGCCAAGAAGGAGTTCGAAAGAAGCTACCCGGAAAGATGAAGGTCAAAACGAAGATCAGCAAAGCTG
CCGAGTTCTTGAGGAAGGCGGTGCGGGCGCTGAGGGGCAGGGCTGGCGTCCTCAGGGCGCGGCTCCTCTTCCTCGCCTCG
TTCCGCCACAGGACGGCGATGGTCGGCACCGTGTCGCGCCACCTCCGCGCCCTCCTGCCGGGCCGCCAGAGAGACCCGGT
GCACGACCACCGCAAGGTCCACGCCTCGTCGACGATGGCGGCGGAGGAGGACGGGCAGGCCGCGATGCATGGAGTCGACG
TCCCAGGCCTCTCCGAGCTGTTGCAAGAAGTGGTCGGCGACGACGATGACGGCCACTACGGCTACCCAGACTGGACGCAC
TCACTGTTCGACGACAACGATGACGACTGCAGCCTCCAGGAGGGCGACGATGTCGACGAGGAGGAACGCGGTGGTGGCGC
GGAGGCAATGGAGGAAGATCGGCTGCCTGACGACGAGCCGTCGGTGATGGACGTCATCAGGAGGTGCAGGGAAGGGGACG
GAAAGGAGTTCAACATCAAGGAGGAGATCGACCACGCCGCTGACATGTTCATACGGCGGGTCCGCAGCCGAATGAACAAC
CGGAGCTTCTAGCCGTCCA-GGCCTTCGATTGTTTTGTTTCTTCGTGACTGAGCTTTCA-----------GTGAGCTTCC
AGATGTCT-----TAGTACATAATTCGGTTAGACATGGCATATGACAGATGCATGTTATTCCCAGTTAAAAGCCACATAT
ATATGTATATCATACTTATATATCACTAGTCAATGTGTACGTACAATGCACGTTAATTTAAAGGTATATTAAATATATGT
GGATATTAAGTAGAATATTATTTGCGTGTTATTATGTGATTAGCACTATATTTGATATGAAACTAACTGCACGCTAAACG
TGTTGAGCGCTCGATATTGAAGCAGTCTAGGTCGTTGAATTAACATAATTTGATGGCTGAAATTAATTAAATCTGCCTCT
GTGAATATTTTTATATTGATATAGATAC-----------TATTTATATATCATACTTATGTATCATACTAGCAAAATGGC
CCGTGTGTTGCAACGGAAG--AAAAAAACATCATAAAGTCCATGAACACTTTTACAAAAAATTTAACATTTCTTAAAATC
AAGAACATTTTTTGAATACATGAACATTTTACACTATTTGCAAATATTTGTTTAAAATTGTGAACATTTTTTAAACAATT
TTTTTGAATGGGCAAACATTTCTAGATTCGATGAATATTTAATTGGAAATTGGTGGAACAATTTTTGAAATCCACTAACA
TATT-TTGATTTAGCGAACATTTTTTGAAATCCATGATCAT-TT--TGAATAAGCAAATATTTTATGAACATATAAACTA
TTTTGTAACTCATGAATAGTTTTTGAATAGGCCTGCAGGGTGGTGCTCCTCGCTGCATCGGCGTCGTCCGATTTCTGGAG
CTTCAGTTCAAGATTGGTGGTAGAGGACCTAGTTAT--------TTTTCCCACTTTTATGTTAGAGTCCTTCTGGTAAAA
TCTG--------------ATTGTTATGCCGTATTTTTCTTTTTTTTTAGCACCTCCATTTAACTTGTATCACCATAGTCT
TATCTAATGCAGCTTCCGGGGCGGTTGG
>chr7B_86
CGCTCACCGC----------------------------------------------------------------------
-------------CTGGGAACTATGGAGACACCAAAACGGATGCATTTTTTGATGGGCAATGACCTTCGATCTTGCATCT
CGTGTAGTCCATAATAGAAGACGTCCGCCTCTGGGCCTTCACCAGTGCCGGCGCAAGCGATTGGCCACTATGTTACCCAA
GAGATAGTTTTCCATATTTTTTGTTTCGGCTGACCAACCCTTGTCCCTCAGCTCTGGTCTCCTAAGCTCATGCCAGCTCA
TGTACGTGATGCTCATGTTGCCGCACTTTGTATTCATTCTTCTCTTCTATCAATGTAATGATACACAATCTTCACGTATT
CGTGAAAAAGAAAACTAGAAATTTTTGTTTGTCAATGAGAAATATTCAAAGTTTGGGCGGTTTTACACAAAAGTACACGG
ATTTCGTTATAATGGATGGAGAATGTTTGAAATACTATATTTTCTTTTTCTTTCAAAAATAGCAAAGTTTTTCCCAACTT
TCTAGAGTTGGATATAGATGTAGTTTGAATATGGAGTGGACATCCACACCCGAAAGGTAAAATGCATTCCTGAAGTGCAC
TCCTCAAAAAGAGCTTTTGGTCCATAGAAGAGTTTGATTGGGCAGTCCCTCTCTTGCTGCGAGGCTTTTGCTTTGTCGAG
TTCCCAAGTTTCTTGGTACCTTTCCTTCTTTTGACCTTCCCGGTTACCCTGAGTTGGCTAGCTGCCTGCATCTATAAATA
ATTGAGCTCCCGTGTCCTTAAAACAAGGCACATGTCCCATGCATCAACACTTCAGTCTCGCCATTACCAGTACCACACAC
GCACTCGCTAATTGCAATTTGCAGCCAGCAGCACCAATTTGTTCTGTCTTGTCTGCATTCCTGCAGTCGCTTAAGAACTA
GTAGTAGCTAGGT--------AGGAGTTTGAAAGAAGCTAGCCAAAAAGATGAAGGCCAAGACGAAGATCAGAAAGGCTG
CCGACTTCTTGAGGAAGGCTGTGCGGGCGCTGAGGGGCAGGGCCGGCGTCCTCAGGGCGCGGCTCCTCTTCCTCGCCTCG
CTCCGCCACAGGACGGCGATGGTCGGCACCGTGTCGCGCCACCTCCGCGCCCTCATGCCGGGCCGCCAGAGAGACCCGGT
GCACGACCACCGCAAGGCCCTAGCCTTGTCGACGATGGCGGCGGAGGAGGACGGGCAGGCTGCGAAGCATGGAGTCGACG
TCCCAGGCCTCTCCGGGCTGTTGCAAGAAGTGGTCGGCGACGACGATGACGGCCACTGCGGCTACCCGGACTGGACGCAC
TCACTGTTCGACGACGACGATGACGACTGCAACCTCCAGGAGGGCGACGATGTTGAC---GAGGAACGCGGTGGTGGCGC
GGAGGCAATGGAGGAAGATCAGCTGCCTGACGACGAGCCGTCGGTGATGGACGTCATCAGGAGGTGCAGGGAAGGGGACG
GAATGGAGTTCAACATCGAGGAGGAGATCGACCACGCCGCTGACATGTTCATACGGCGGGTCCGCAGCCGAATGAGCAAC
CGGAGCTTCTAGACGTCCTGGGCCTTCGATTGGTTTGTTTCTTCGTCACTGAGCTTTCGTAC------------------
----------TACTACTACATAACTTGGTTAAACATGGCATATGACAGATGCATGTTTTTCCCCGTTAAAGTCACA----
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>chr7D_117
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------------------------------------ACGGATGCA-TTTTTTATGCGCAACGACCTTCGGTCTCGCATCT
CGTGTAGTCCATAAAAGAAGACGTCCGCCTCTGGG------CCAGTGCCGGGGCCAGCGATTGGCCACTATGTTACCCAA
GAGATAGTTTTCCATATTTTTTGTTTCGGCTGACAAACCCTTGTCCCTCGGCTCTGGTCTCCTGAGCTCATGCCAGCTCA
TGTACGTGATGCTCATGTAGCCACACTTTGTACTCATTCTTCTCTCCTATCAATGCAATGATACACAATCTTTGCGTATT
CGTGAAAAAA-----TAGAGATTTTTGTTTGTCAATGACAAATATTCAGAGTTTGAGTGGTTTTACACAAAAGTACACGG
ATTCCGTTATAATGGATGGAGAATGTTTGAAATACTATATTTTCTTTTTCTTTCAAACATATCAAAGTATTTCCCAACTT
TCTAGAGTTGGATATAGATGTAGTTTGAATATGGAGTGGACATCCATACCCGAAAGGTAAAATGCATTCCTGAAGTGCAC
TCCTCAAAAAGAGCTTTTGGTCCATGGAAGAGTTTGATTGGACAGTGCCTCTCTTGCTGCGAGGCTTTTGCTTTGTCGAG
CTCCCAAGTTTCTTGGTACCTTTCCTTCTTTTGACCTTCCCTGTTAACCTGAGTTGGCTAGCTGCCTGCATCTATAAATA
ATTGAGCTCCCGTGTCCTTAAAACAAGGCACATGTCCCATGCATCAACACTTCAGTCTCGCCATTACCAGTACCACACAC
GCACTCGCTAATTGCAATTTACAACCAGCAGCACCAATTTGTTCTCTCTTGTCTGCATTCCTGCACCCGCTTCAGAACTA
GCTAGGTAGTC---------AAGGAGTTCGAAAGAAGCTAGCCAAAAAGATGAAGGCCAAGACGAAGATCAGCAAGGCTG
CCGACTTCTTGAGGAAGGCGGTGCGGGCGCTGAGGGGCAGGGCCGACGTCCTCAGGGCGCGGCTCCTCTTCCTCGCCTCG
CTCCGCCACAGGACGGCAATGGTCGGCACCGTGTCGCGCCACCTCCGCGCCCTCATGCCGGGCCGCCAGAGAGACCCGGT
GCACGACCACCGCAAGGCCCTCGCCTCGTCGACGATGGCGGCGGAGGAGGACGGGCAGGCCGCGATGCATGGAGTCGACG
TCCCAGGCCTCTCCGAGCTGTTGCAAGAAGTGGTCGGCGACGACGATGATGGCCACTGCGGCTACCCGGACTGGACGCAC
TCACTGTTCGACGACGACGATGCCGACTGCAACCTCCAGGAGGGCGACGATGTTGAC---GACGAACGCGGTGGTGGCGC
GGAGGCAATGGAGGAAGATCGGCTGCCTGACGACGAGCCGTCGGTGATGGACGTCATCAGGAGGTGCAGGGAAGGGGACG
GAATGGAGTTCAACATCGAGGAGGAGATCGACCACGCCGCTGACATGTTCATACGGCGGGTCCGCAGCCGAATGAGCAAC
CGGAGCTTCTAGACGTCCGGGGCCTTCGATTGGTTTGTTTCTTCGTGACTGAGCTTTCAATGCGCTTTTAGTGGGCTTCC
AAATGTCTAGTACTACTACATAACTCGGTTAAACATGGTATATGACAGATGCATGTTTTTCCCGTT--AAAGTCACAGAT
GTATGTATGTCATACTT---------------------------------------------------------------
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>chr7B_1979
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----ATATATATATATATATATATATATATATATATATATATATATATATA------------CATACTAGCAAAAGGGC
CCGTGCGTTGCAACAGGAG--AAAAAAACATCATAAAGTTCGTGAACACTTTTACAAATGTTTGAACATTTTCTAAAATC
AAGAACATTGTTTGAATACATGAACATTTTATACTATTTGCAAACATTTGTTTAAAGTTGTGAACATTTT-TAAATAATT
TTCTTGAATGGGCAAACATTTCTAGATTCGACGAGTATTTAACTGGAAATTGGTGGAACAATTTTTGAAATCCACTAACT
T-TT-TTGATTTAGCGAACATTTTTCGAAATGCAAGATCAT-TTTCTGAATAAGCAAATATTTTATGTACATATAAAATA
TTTTGTAACTCACAAATAGTTTTTGAATAGGCCTGCAGGGTGGTGCTCCTCGCAGCATCGGGGTCGTCCGTGTTCAGGAG
CTTCAGTTAAAGATTGGTGGTAGAGGACCTAGTTAC--------TTTTCCCACTTTTATGTTAGAGTCTTTCTAGTAAAA
TCTGGAGCTCAAAATCTGATGGTTGTGCCGTGTTTTTCATTTTTT--CGTACCTCCATGTAACTTGTATCACCATAGTCT
TATCTAAAGCTGCTTCCGG---------
>chr4A_2006
TTAGTATATATATATATATATA----------------------------------------------------------
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--------------------------------------------------------------------TAGCAAAAGGGC
CCGTGCGTTGCAACAGGAG--AAAAAAACATCATAAAATTCGTGAACACTTTTACAAATGTTTGAACATTTTCTAAAATC
AAGAACATTGTTTGAATACATGAACATTTTATACTATTTGCAAACATTTGTTTAAAGTTGTGAACATTTT-TAAATAATT
TTCTTGAATGGGCAAACATTTCTAGATTCGACGAGTATTTAACTGGAAATTGGTGGAACGATTTTTGAAATCCACTAACT
T-TT-TTGATTTAGCGAACATTTTTCGAAATGCAAGATCAT-TTTCTGAATAAGCAAATATTTTATGTACATATAAAATA
TTTTGTAACTCACAAATAGTTTTTGAATAGGCCTGCAGGGTGGTGCTCCTCGCAGCATCGGGGTCGTCCGTGTTCAGGAG
CTTCAGTTAAAGATTGGTGGTAGAGGACCTAGTTAC--------TTTTCCCACTTTTATGTTAGAGTCTTTCTAGTAAAA
TCTGGAGCTCAAAATCTGATGGTTGTGCCGTGTTTTTCATTTTTT--CGTACCTCCATGTAACTTGTATCACCATAGTCT
TATCTAAAGCTGCTTCCGG---------
>chr5B_2029
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-----------------------------------------------------------------TACTAGCAAAAGGGC
CCGTGCGTTGCAACGGGAGGAAAAAAA-CATAATAAAGTCCGTGCACA-TTTTACAATTTTTTTAACATTTTCTAAAATC
AAGAACAATTTTTGAATACATGAACATTTTATACTATTTGCAAACATTTGTTTAAAATTGTGAACATTTT-AAAACAATT
TTCTTGAATGGGCAAACATTTCTAGATTCGTAGAATATTTAATTGGAAATTGGTGGAATAATTTTTGAAATCCACTAACA
T-TTTTTGATTTAGCGAATATTTTTTGAAATGCATGACCAT-TTT-TGAATAAGCAAATATTTTATGAACATATAAACTA
TTTTGTAACTAACGAATAGTTTTTGAATAGGCCTGCAGGGTGGTGCTCCTCGCAGCATCGGCATCGTCCGTGTTCTGGAG
CTTCAGTTCAAGATTGGTGGTAGAGGACCTAGTTACTTACTTACTTTTCCCACTTTTATGTTAGAGTCTTTCTAGTAAAA
TCTG--------------ATAGTTGTGCCGTATTTTTCTTGTTTT--AGTACATCCATGTAACTTGTATCACCACAGTCT
TATCTAATGCAGCTTCCGGGCCGTTTGG
>chr5B_2029
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-----------------------------------------------------------------TACTAGCAAAAGGGC
CCGTGCGTTGCAACGGGAG--AAAAAA-CATCGTAAAGTTCATGAACACTTTTACAAATTTTT-----------------
--GAACATTTTTTGAATACATGAACATTTTATACTATTTGCAAACATTTGTTTAAAGTTGTGAACATTTTTTAAACAATT
TTCTTGAATGGGCAAACATTTCTACATTCGACGAGTATTTAATTGGAAATTGGTGGAACAATTTTTGAAATCCACTAAC-
T-TTTTTGATTTAGCGAACATTTTTTGAAATGCATGATCATTTTT-TGAATAAGAAAATATTTTATGAACATATAAACTA
TTTTGTAACTCACAAATAGTTTTTGAATAGGCCTGCAGGGTGGTGCTCCTCGCAGCATCGGGGTCGTCCGTGTTCAGGAG
CTGCAGTTCAAGATTGGTGGTAGAGGACCTAGTTACTT--------TTCCCACTTTTATGATAGAGTCTTTCTAGTAAAA
TCTG--------------ATGGTTCTGCCATATTTTTCTTTTTTT--AGTACCTCCATGTAACCTGTATCACCATAGTCT
TATCTAATGCAGCTTCCAGGGCGTTTGG
>SNPs
--S--SSS---SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----S------S-------SS---S------------------S----------------------
----------------------S----------S-----------------------S----------------------
-----------S-------------S---------------------------S--------------------------
----S-------------------S-S------------------------------------SS---------------
-------------S------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------S----S------------S----------------------------------
-----------------------------------------------S-----S-SSSSSSSS-----------------
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-------S-----------S-S-------------------------------S-----------------S--------
S------------SSSSSSS--------------------S--SS-----------S---S--------------S----
----S--------------------------------------S------------------------------------
S-----------------------------------------------------S-------------------------
-----------------S--S-----------------------------------------------------------
---------------------------------------------------------S---------S------------
---------------S---------------S---------------------S---SSS--------------------
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---S-------------S---------------------------------------------------------S----
------------S-----S-------------S----------------------------------------S------
-S-------------S-------S-------S-------------------------S-----S-------------S--
S-------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----S-S-----SS-----S---S--------------S-------SSSSSSSSSSSSS-------------S---
-----S----------S-----------------------------------------SSS----------SS-------
-------------------------------S------------S-----------------------------------
--S----------------------------S------------------------------------------------
-S-----------------------------S------------------------------------------------
------------S----------------------------------------S----------------SS--------
-----------------------------------S--------------------------------S----S------
--------------------S---S--------------------SS--S--------S---------------------
-----------------------S----
>forward_81
-------------------------------------------------------------GCCCATGTAGCCTTGCTGT
A-------------------------------------------------------------------------------
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>reverse_1914
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-------------------------------------------------------------------------CTAAACG
TGTTGAGCGCTCG-------------------------------------------------------------------
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