>input_sequence_74462
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----------------------------------------ATGTGTACTACCGCGAGGGCGCGCTGCGAGCTGTGCGGCG
CGGGAGCGGACGTGCGCTGCGAGGCCGACGCGGCGTTCCTCTGCGCGGCGTGCGACGCCGAGGTGCACGGCGCCAACTTC
CTCGCGTTCCGCCACCGCCGCACGCGCGTCTCCTCACCTCCCGGCCCCGAGGACGCGCTGTCCCGGACGTCCACGGCCGA
GTCCGCGAC---------C---AAGGGCCAGAGGAGCCGCGCGCGGGGCAACGCGGTGCTCGAGGGCTGGGCCAGGCGAA
TGGGCCTCGAGGCGGTGGCGGCGCGACGACATGCCACGGCGGCCGGCCGCACGCTCCGGGCCCAGGTCGCCGCGGGGCCG
CCACGCGTGCCGCTGCGCGTCGCGATGGCGGCCGTGCTGTGGTGGGAGGTGGCAGCTCACGGCGGCGTCCAGGAACCCGG
CGACGCGCTCCGGCGCCTGGAGGCCTGCGCGCGCGTGCCGGCGAGGCTCCTCCTGGCGGTGGAGTCGTGCATGGTGCGCG
GCCGCGCCAAGAAGCGGACGGCCGCGGAGGGCTGGGGCGAGTGC---TCACCACCCCACACACGAGACAAGACCAGACAC
-ATCTTCTCCAAGACATGA-------------------------------------------------------------
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>chr5A_1_TraesCS5A01G339100
TAAGAGAAAACTGACCAATGCATGCACTTTATGCATGCATGAATTGCAATTAATGCATTCGTAAACATAATTTTTTGAGG
AAAACAAAAACATTAATTAGGTGCTTTTGCAAACTACAAAAAATATTCCACCACTCATCATCTACCTTGGCTGATGAGAT
TTTTGAATTGAGCCTTATAAACCGGAAAGGAGGGAGTAGTTAGTATCATGCATGCCAACTAAGCAATACTGATGAGGTGG
CATAGAATTAAAGAAGAAAGAGATATTTGAGTATTATATCATGATACCTTATCATATTAAATGATATGCTACTTTGTGTC
ATGATGGCAATAAATATAGTCCGATATAATACTACCAACATATGATAGCATGCAGTATGAATGTAGTATCATACACTAGT
ATCATACGCATGATACTATATTTTTTTCCAAAAGTATGCCAATGACATAGCATATTTTTATAGACATGATACTAATATAT
AATACTTCCCGTTACAACAAGTCTAGGAAACTCAAACTTGATATGGCCCGTTAACTAAAGCAACCACGTGGCTGGTTGGA
GAGGATGGAGCTCACTCAGAT---AGCGACCGGCTTGTGTAGTAGGAGTACGTCCTAGTCCGAGAGGGAAGCGGTTTCGT
GGCCAAGGATCACTCTAGTCTAGCCATCCCATCCGTCCTCGCGTCGGCGCATCCCACCG------ATGGAGCC-----CC
CCTCCAACTCGCGGCTCATGACGTTCCACCGCAGCCGCGCCGCACATGCATGGCCGTGGTTGGTGGTCGGAGTCATCGGT
CATGGACGGGTACGTGGGAGTCGCGCGCGCGAGTG---------------GCCCTCGCCACACCGCCCAACGTCGCTCTC
GCCTCCGGCCGTTTGCATTGCAT------------CCACGGAGTACAAAGCCGA----CCCCACGGGCCATGGGCTTCCT
CCGTCGCCTTTAAATACGCGCTGCGACGAGGGGAAGCACGGCAC------GCTGCCGCCTCGCTCGCT------------
--CGCC---------GCCGGCCGAGG------GCGCGTGGATGTGTACTACCGCGAGGGCGCGCTGCGAGCTGTGCGGCG
CGGGAGCGGACGTGCGCTGCGAGGCCGACGCGGCGTTCCTCTGCGCGGCGTGCGACGCCGAGGTGCACGGCGCCAACTTC
CTCGCGTTCCGCCACCGCCGCACGCGCGTCTCCTCACCTCCCGGCCCCGAGGACGCGCTGTCCCGGACGTCCACGGCCGA
GTCCGCGAC---------C---AAGGGCCAGAGGAGCCGCGCGCGGGGCAACGCGGTGCTCGAGGGCTGGGCCAGGCGAA
TGGGCCTCGAGGCGGTGGCGGCGCGACGACATGCCACGGCGGCCGGCCGCACGCTCCGGGCCCAGGTCGCCGCGGGGCCG
CCACGCGTGCCGCTGCGCGTCGCGATGGCGGCCGTGCTGTGGTGGGAGGTGGCAGCTCACGGCGGCGTCCAGGAACCCGG
CGACGCGCTCCGGCGCCTGGAGGCCTGCGCGCGCGTGCCGGCGAGGCTCCTCCTGGCGGTGGAGTCGTGCATGGTGCGCG
GCCGCGCCAAGAAGCGGACGGCCGCGGAGGGCTGGGGCGAGTGC---TCACCACCCCACACACGAGACAAGACCAGACAC
-ATCTTCTCCAAGACATGACATGACTCGTTCGCTTA-GCATATTTTTTGCTGTAAATAAGCTAA----GCAGAGGTTGAT
CAAATCTTGTTGTTTTCCGGGAAATACCCAATGATTCCTGGGTACATATGAACCCTATATGGGGATTTATTTGTAATAGT
TAAACAAAAATTTAAAATAGTTAAGAAACTATTTTTAGAATAAAGTTGACTTACTTACGCACTAGTATACACAATTTTCA
CAAAAAAGAAAAATATGTTGACTTCACAGCGAAAAAGACAAAAATTATTTGCTATTATAGGTCACTATTCACGCTATTTT
GACCGGAAATTTGTCTTTTTTGAAAAGAAGTCAAAAGGATATTTTTTTTGGTGGATTTTATTTTTCACGAGTACAATAGA
AGGTCAAGTTTATTTTCAAAATATTTTCAGGAATTTTTGACATTTTGTTGAATTACTAAAAAAATTTCCCATATAGGGTG
CATATGTCCCCATAGACCAAAAGTTCCCCTCCGTTGTTTTCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTGTCGCTGATGGAGTATTGATGTTGGTTAGATGTAACCCAAATAGAAGAGCAAAGTGACCGGCTTGTTGCAAAATT
CTTCTTCCAAAAGATAGCATTCGTCAGCCTATATGTACGACAATAAAAAGTGTTATATCTTTTCTTCTTCTTAATTAATC
GATGAGGCAAAACTTTTGCCTCCGTTTCGAAAAAAAACAATTCTAGCATAGCCGCATTTTCGGAAAAAGAAACATCCTCC
TAGATTTCTATGGTATATGGAATTTATGGTTTCCTTTGGTGCAAATCCAATTATCTAAATTGGAAATAAGAAGCAATTCT
CCCATTGGTAGCAAATGGTTATTCACTAGCAATACCCGCGCGGCGACACGCCGCGCCCCGTCGATACGTTATGTGCATGT
CTTGCTTTTTTGTGACTACAAACATATGCTCATTCGAGCATATGTTTGTAGTCACAAAAAAGCA
>chr5D_507
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--------------------------GAAACTCAAACTTGATATGGCCCGTTAACTAAAGCAACCACG----TGGTTGGA
GAGGATGGAGCTCACGCAGAT---AGCGACCGGCGTCGCCCTGTGT-AGTACG--TAGTCCGGGCGGGAAGAGGTTTCGT
GGCCAAGGATCACTCTACTCTAGCCAACCCATCCGT-----CGTCGGCGCATCCCACCGTCACCGATGGAGCC-----CC
CCGCCAACTCGCGGCTCACGACGTTCGACCGCAGCCGCA---------CATGGCCGTGGCTGTTGGTCCAA-------GT
CATGGGCGGGTACGTGTGG-------GAGTGGCCCTCCGTCCCCTCCA-CGCCCTCGCCAGACCGCCCAACGTCGCTCTC
GCCGCCGGCC-----GCTTGCATCCACGGAAACTGCCACGGAGTACAAAGCCGA----CCCCACGGGCC-------TCCT
CGGTCGTCTTTAAATACGCGCTCGTACGTGGGGAAGCACAACACGCTGCTGCTCCCGCCCCGCTCGCT------------
--CGCCTCTCCGCCGGCCGGCCTCCT------GGACGCGGATGTGTACTACCCCGAGGGCGCGCTGCGAGCTGTGCGGCG
CGGGAGCGGACGTGCGCTGCGAGGCCGACGCGGCGTTCCTCTGCGCGCCGTGCGACGCCGAGGTGCACGGCGCCAACTTC
CTCGCGTTCCGCCACCGCCGCACGCGCGTCTCCTCACCTCCCGGCCCCCAGGGCGCGTTGTCCCGGACGTCCACGGCCGA
GTCCGCGACGCCGCCGTCGGAAAAGGGCCAGAAGCCGCGGGCGCGGGGCGACGCGGTGCTCGAG-------------GGC
TGGGCCTCGAGGCGGGGGCGGCGCGCCGGCATGCCACGGCGGCCGGCCGCTCGCTCCGGGCCCAGGTCGCCGCGGGGCCG
CCACGCGTGCCGCTGCGCGTCGCCATGGCGGCCGTGCTGTGGTGGGAGGTGGCAGCTCACGGCGGCGTCCACGAGCCCGG
CGAAGCGCTCCGGCGCCTGGTGGCCTGCGCGCACGTGCCGGCGAGGCTCCTCATGGCGGTGGAGTCGTGCATGGTGCGCG
GCCGCGCCAAGAAGAGGACGGCCGCGGAGGGCTGGGGCGAGTGCAGCTCACCACCCCACACAAGAGACAAGACAAGACAC
CATCTTCTCCAAGACATGACATGACTCGTTCGCTTA-GCATA-TTTTTTCTGTAAATAAGTGAA----GTAAAGGTTGGT
CAAATCTTGTGGTTTTCCG-------------------------------------------------------------
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>chr5B_553
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------------------------------------------------------------------------TGGTTCGA
GCGGGTGGAGCTCACGCAGCAGAGAGCGACCGGCGTGGGTAGTACCGAGTACG--TAGTCCGAGCGGGATGAGGTTTCGT
GGCCAGGGATCACTC-----TAGCGATCCCATCCGTCGTCCCGTCGGCGCATCCCACCG------ATGGAGCCCCCGGCC
CCTCCAACTCGCGGCTCACGACGGTCGACCGCAGCCGCTAGCTTGTGCAAGCGCGACGGGT-------------------
-----ACGTGGACGTGGGAGTCGCGCGAGTGGCCCTCCCTCCACGCCCTCGCCCTCGCCAGACCGCCCAACGTCGCTCTC
GCCTCCGGCCGCTTAGCTTGCATCCACGTAAACTGCCACGGAGTACAAAGCCGACCCGCCCCACGGGCC-------TCCT
CGGTCGTCTTTAAATACGCGCTCGGACGTGGGGAAGCACAACACGCTGCTGCT---GCCCCGCTCGCTCCCCGGCCGTCG
ACCGCCTCCCCGCCCGCCGCCGCCGGCCTCGGGGACGTGGATGTGTACCACCGCGAGGGCGCGCTGCGAGCTGTGCGGCG
CGGGAGCGGACGTGCGCTGCGAGGCCGACGCGGCGTTCCTCTGCGCGGCGTGCGACGCGGAGGTGCACGGCGCCAACTTC
CTCGCGTTCCGCCACCGCCGCACGCGCGTCTCG---CCGCCCGGCCCCGCGGACGCCCTGTCCCGGACGTCCACGGCCGA
GTCTGCGGCGCCGCCGGCC---AAGGGCCAGAAGCCACTTGCGCGGGGCGACGCGGTGCTCGAGGGCTGGGCCAGGCGGA
TGGGCCTCGAGGCGGTGGCGGCGCGTCGGCATGCCGCGGCGGCCGGCCGCGCGCTCCGGGCCCAGGTCGCCGCGGGGCCG
CCACGCGTGCCGCTGCGCGTCGCGATGGCGGCCGTGCTGTGGTGGGAGGTGGCAGCTCACGGTGGCGTCGACGAGCCCGG
CGTCGCGCTCCGGCGCCTGGAGGCCTGCGCGCACGTGCCGGCGAGGCTGCTCATGGCGGTGGAGTCGTGCATGGTGCGCG
GCCGCGGCAAGAAGCGGACGGCCGCGGAGGGCTGGGGCGAGTGC---TCACCACCCCACACAAGAGACAAGACAAGACAC
CATCTTCTCCAAGACATGGCATGACTCGTTCGCTTAGGCATA-TTTTTTCTGTAAATATAAGTTAAGTGTAAAGGTTGAT
CAAATCTT------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------SSSS--------
---------------S------------------S--S-------SSSSSSSSSS---------S------S--------
-----------------S-------------------S--S---------------------------------------
------------------S-------S-----------SSSSSSSSSS-----------S--S-----SS-SSSSSSS--
---------------------------S-S-SSSS-------------------------S-------------------
-----------S--SSS----------------------------------------------------SSSSSSS----
-S----S---------------SS----S----------SS------------S-----S--------------------
----------------------SS---------SS---------------------------------------------
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--------------------------------S-SSS--S---------S----------------------------S-
-------------------------S--S---------------------S-----------------------------
-----------------------------------------------------------------------S--S-----
--------------------------------S-------------------S---------------------------
--------------------------------------------------------------S----------S------
------------------------------------------S-----S-----------SS-------S-S--------
----------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_606
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--------------------------CGACCGGCTTGTGTAGTAGG----------------------------------
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>reverse_2175
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--------------GACCAAAAGTTCCCCTCCGT----------------------------------------------
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