>input_sequence_74457
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---------------------------------------------ACAC--CCAGACAATCAAGTGCTACA-CACACACA
CACATTCAT--------------CACCAGTCGATCGATCCGACAGCTAGCTAGCCATGGCC---GCCGGGAGGAAGGTGA
CGATGAGCAGCGCCGGCGTGGCCGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGACCGGGTACCAT
GTCTGCAACGTGGACACGGACAGCCTGGTCAACAACTGCAAGTCCTACTGCACGGCGGGCAGCTCGGAGGCCAGTCCCAG
CGGCGCGTGCTGCGGCGCGGTGCGCGGCGGTGACTTCCACTGCCTCTGCCAGTACAAGGGCGTGCTGCCCAAGAACATCG
ACGCCAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTACGGGGCGGTCTCCTGCTAGTCA--GTCACGCACTACCAGC
AGCTCGATTGG--------------------CGCCGGTCGCCGGTTGCACTAGTAGATCGTACGTAAGG-------TGTT
AACTTTCACTCGTTCGTAGGAGTAA----GTTCTGGTCGGCTGGCTGATCCGATGGTGCTCCTGCGTGCG----TGCACG
CTTTGTGTTG-------------------TATCCTCTTTTGCTTTTCGTAAGTCATGT----------------------
CGCAGAAATAAAACTTGTTTCCCGTG------------------------------------------------------
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----
>chr3D_1_TraesCS3D01G415300
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTTGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTACGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGACGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGTAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTAGTTTGACTGAATATCAGTATGCGATTAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATGCATGGCA
CTTCGTTTACTGCCAGACCGTGAGCTATATTATCTAAGCTAGCTAGCCCCAAATGC--TATGTCCCATTCGCCGGCCATG
CACATGAATTCCTCTGTAGACGCCATGCTCTGAACTCCATCTGGATTCAGATGAATTAAGATCGCCCACTTGGCGCAAGA
CGGCGCCCCAACATACCTCCAATTCCAGCCAAGAAATAAGACTCACATGTTACCGGCCGGTTTCGTGCTTGCCCATTGGC
TCGGTCTGCGCTGCCAGCACGTACCGCATGCAGGTACGTGGAAATATACGTTCCCGTTGAATGGATGGCTCCGT-GTGCC
GACGATCTGATCTGGCTAGCTTTGCCCGTGACCTAATGCGGCCAAGCGAGCGGCCACATGCGCGTCGTCACGGGCCACGG
CATCCCCACGCTATATAAGCCCTAGCCAATCGCCCAAA-CGTGACACAC--CCAGACAATCAAGTGCTACA-CACACACA
CACATTCAT--------------CACCAGTCGATCGATCCGACAGCTAGCTAGCCATGGCC---GCCGGGAGGAAGGTGA
CGATGAGCAGCGCCGGCGTGGCCGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGACCGGGTACCAT
GTCTGCAACGTGGACACGGACAGCCTGGTCAACAACTGCAAGTCCTACTGCACGGCGGGCAGCTCGGAGGCCAGTCCCAG
CGGCGCGTGCTGCGGCGCGGTGCGCGGCGGTGACTTCCACTGCCTCTGCCAGTACAAGGGCGTGCTGCCCAAGAACATCG
ACGCCAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTACGGGGCGGTCTCCTGCTAGTCA--GTCACGCACTACCAGC
AGCTCGATTGG--------------------CGCCGGTCGCCGGTTGCACTAGTAGATCGTACGTAAGG-------TGTT
AACTTTCACTCGTTCGTAGGAGTAA----GTTCTGGTCGGCTGGCTGATCCGATGGTGCTCCTGCGTGCG----TGCACG
CTTTGTGTTG-------------------TATCCTCTTTTGCTTTTCGTAAGTCATGT----------------------
CGCAGAAATAAAACTTGTTTCCCGTGTTAGCTATCTTCTATTGTTTCTATATATATACTCCCTCCGTTCGGAAATACCTG
TCGAGAAAATGGATGTACCTAGATGTATTTTAGTTCTAGATACATCCATTTTTATTCATTTTGGCGACAAGTAATTCCGG
ACGGAGGGAGTAGTTTTTTTTATCATCTACCAATAATACCAACAAGTTCTGTGAAACTTGTAAAAAAAATCTGACACACA
TTTCTAAACTTTGGATCACTACAACAACGATCATATGTTCCTTTTTTATCCGCAAAAAGCAAGATCATATGTTCATTTTA
GGAACAACAATGATCATAGGCAGAGGGTCATGGGAGAGCCTTCGGAAAATGTAAACATATTTTAGTAATTTCTATTTTTT
GAGGGGAATTTTAGTAATTTATATGTATAGCTCAT---------------------------------------------
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--------------------------------------------------------ATAAGATCCGTAAAGGCCTTATCC
ATGAGGGCTCCAGTTTGGCGCTTCACGCACCGAATTGCGAGCACAGCTATGTCTCACCTTGAGCGTAGA-----------
---------------CACGACGCTTCGTCATGCTGACATCACAGAAATGTTTTTTC-TTTTTTACGTTTGTCTCTATTTT
GAAAAATAAGAAATACATGTATTATGAAAAATATTTAT-TTAGTTTTATTAAGTGTTCATCGCACATTTAAAAACTGTTC
ATGTAATCTATAAAAATTGTTTGTCCAACTTTTAGAAAATATTTGTATCAAT----------------------------
-------------AAAAATGTACATGGCATTTTTTAATTTTTTTATAAAATGTAAGAAAATGTTCATACAATTCCTAAAA
ATGTTTTGTACCATTCAAAAAAATA--ATGTTACATTTAAAGCAATGTT--------CACGTGTTTACAAAAATAATTTC
GTGACATTTTAAAAATGTCTATTCAATGTCAAATTATATTCATATAGTTTAAAAAATGTTTTGTATCATTCAAAGAAAAA
TTCAACCTGTATTTCAAATTTT-TTAAGACGTATTCAAAAACTGTTCAAACCTTGTATTTCAAAACGTGTTAATAATGTG
TTTAAAA-------------------------------------------------------------------------
----
>chr3D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTACTGCCACCGGTGACTCC
ATCCCGTCCGTCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGATGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTAGTTTGACTGAATATCAGTATGCGATTAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAAT--------
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----
>chr6D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCTGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAGTATGCGATCAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACA----------
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----
>chr6D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAATGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCAGCCTCTGCATGGCCAACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAGTATGCGATCAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATCCA-----
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----
>chrUn_1
TAGCCTCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGACGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAGTATGCGATCAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATCCA-----
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----
>chr7D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCTGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTATCATGTGCTAGTTTGACTGAATATCAGTATGCGATTAT
ATGTGTCAATGCCATGATAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATCAT-----
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----
>chr7D_1
TAGCCGCCACGAACAGATCACATCTGCTCCATGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCCGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAGTATGCGATCAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAAT--------
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----
>chr4D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGGGG-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCCACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAG-CGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTAGTTTGACTGAATATCAGTATACGATTAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACA----------
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----
>chr4D_1
TAGCCGCCACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGG-G-TGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCCACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCATTTATCCCGCTCCTACCGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTAGTTTGACTGAATATCAGTATGCGATTAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATCCA-----
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----
>chrUn_4
---CCGCTACGAACAGATCACATCTGCTCCACGCGCACGCCCACCGTCGTTCCCTTGCTGCTGCTGCCGCCGGTGACTCC
ATCCCGTCCGCCGCGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTACGG-GGTGAGG
GGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCACTTCCGATCGTCTACTTCCTCTACGTCCGCGTCGCCTTCAT
CATCACCATGTCCACCGACGCCAAACGTGCCGCCGCCGAGAAAGCTGAAGCTGACAAGAAGGCCGCCGAGGACGCCGCTG
CTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGTTTTCTGTTTTA
GCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAGTATGCGATCAT
ATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAACAATCCA-----
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----
>chr3B_544
TCAGACA-------------------------------------------------------------------------
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---------------------------------------------------------------------AATGCATGGCA
CTTCGTTTACTGCCAGACCGTGAGCTATA-TATCT-AGCTAGCTAGCATCGAATAA-ATATGTCCCATTCGCCGGCCATG
CACATGAATTACTCTGTAGACGCCATGCTCTGAACTCCATCTGGATTCAGATAAAT-----TCGCCCACTTGGCACAAAA
CGGCGCCCCAACATACCTCCAATTCCAGCCAAGAAATAAGACTCACATGTTACCGGC----TTCGTACTTGCCCATTGGC
TCGGTCTGCACTGCCAGTACGTACCGCATGCAGGTACGTGGAAATATACGTTCGCGTTGAATGGATGGCTCCGT-GTGCC
GACGATCTGATCTGGCTAGCTTTGCCCGTGACCTAATGCGGCCAAGCGCGCGGCCACATGCACGTCGTCACGGGCGACGG
TATCCCCACGCTATATAAACACTAGCCATCGCCC--AA-CGTGACACAC--CCAGACAACCGACTGCCCCC-AACACACG
CACACATCAAGC-GCAGCTGATCCACCAGTCGATCGATCCGACAGCTAGCTAGCCATGGCC---GCCGGGAGGAGGGT--
-GATGAGCAACGCCGGCGTCGCTGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGGCGGGCGCGGCCGGGTACCAT
GTCTGCGACGTGGACACGGACAGCATGGTGAGCAACTGCAGGTCCTACTGCACGGTGGGCAGCACGGAGGCCAGTCCCAG
CGGCGCGTGCTGCGGCGCGGTGCACGGCGGCGACTTCCACTGCCTCTGCAAGTACAAGGACGTGCTGCCCAAGAACATCG
ACGCGAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTACGGGGCGACCTCCTGCTAGTCA--GTCACGCACTACCAGC
AGCTCGATTGGCGCCGGCCGACGCGGTC---CGCCGGCCGCCGGTTGCACTAGTAGATCCTACGTAAGG-------TGTT
AACTTTCACTCGTTCGTAGGAGTAAA---GTTCTGGTCGTCTGGCCGATCCGATCGTGCTCCTGCGTGCG----TGCACG
CTTTGTGTTGGCGATGCATGCTACCTTTGTATCCTCTTCTGCTTTTCGTAAGTCATGTCGCTGTGTGTCTACAACCATGT
CGCAGAAATAAAACTTGTTTCCCGTGTTAGCTATCTTCTAGTCTTTCTCTCTATATT-----------------------
--------------------------------------------------------------------------------
------------GTTTTTTTCATCATCTAGTAATAATACCAACAAGCTCTGTGAAACTTCTAAAAAAAATCTGACGCACA
T-------------------------------------------------------------------ATGTTCTTTTTA
GGAACAACAATGACCTTAGGCAGAGGGTCATGAGAGAGCCTTCGGAAAATCTAAACATATTTTATGGGAGCCGCTACGCG
TCCGCCGGTAGATGTCTAGTAAACATCCATCACCTCGACAGATGTCAGATCTCCGCGCGCGAGCCGTCTGATCTAACTCC
TCGCACGCACGCGTCGCCTTCCCGACACATTAATTCCTGAAACAACAAACCAGTTGCAGAAACAATGGTCGCGTTGCAGA
AACAATTCCTGAAACAACAATTGTGTTGCAGAAACAATTTCTGAAACAACGTCTACATTGCAGAAACAACTATCATGTTG
CAAAAATTTGGAGATTGCAGAAACAATTCCTGAAACAACGGCCGGGTTGCAGAAACAATTCCTGCAACAAGACCCCTGTT
GCAAAATTTGCAACAACATCGCCAGCCTCTTCTCTTTATTCCTACAACAAGACCGTTGTTGCATTTTTGGCAACAAAGAC
CATGTTGCTGAAAATGTCACCGCGTCGCAGACGCCATGGCTGTCTACGCTGGTGCTCCTCCAGGATGGCGGCGGCGTGGC
TCCAATGGCGGTGTGCCTCACAGAGGAAAGAGAGAAAGGAGAAGGTAGGAGAAGAGGAGGGGCGAGGCCGCACGGGTGGT
GGAGCAGCATCGGTTTGATGCGTATTCATGGGACTGAACTGGAGGTAGGAGACGAGGTTAGGGAAGATATGGATGAGATC
TGTTCGTTGGAGATAAGAAGGAAAAGGAGAGAGGTGGTGCAGGCCCCACATGGGCACGTGGCGCACAGAGAAGACGGTGG
ACGTTTAGCGTGGGATCCGTCGGGTGATTAGAATCATTTCCCTTTATATACAGCTCATAAGATCCGTAAAGGCCTTATCC
ATGAGGGCTCCAATTTGGCACTTCAGGCATCGAACTGCGAGCACGGCTATGTCTTGCCTTTAGCGAGACAGAAGCCAGTG
GGCCGACAAGGTAGCCACGAGGCTTCGTCATGCTGACATCACAGACATGTTTTCTCTTTTTTTACTTTTGTCTATATTTT
GAAAAATACTAGATGCATATATTATGAAAAATATTTTAGTTAGTTTTATTAACTGTTCATACTACATTTAAAAACTGTTC
ATGTAGTTTATAAAAATTGTTCGTCCAACTTTTAGAAAATGTTTGTGTCAATCAAACAAAGCATGTGACATTTTAGAAAC
GCTCACTCGTTTAAAAAATTTACAAGGCATATTTGAAAAAATGTTTACAATGTAAAAAAATGTTCATATAACTTTG-AAA
ATGTTCTGTACCATTCCAAAAAAATGTATGTTACATTTAAAGCAAATAAGCTATGTGCACGTGTTCACAAAAATATTTTT
TTGACATTTAAAAAATGTTTATACAATGTGAAAATATGTTCACATAGTTTAAAAATGTTTCATCTCACCCAAAAG--AAA
TTCAACCTGTATTTCAAAAAAAATTAAGGCATATTCAGATACTGTTCAAACCTTGTATTTGGAAAAGTGTTCATAATGTG
TTCTTTTTAGGAACAACAATGATCTTAGGCAGAGGGTCATGGGAGAGCCTTCGGAAAATGTAAACATGTTTTAGTAATTT
ATAT
>chr3A_544
TCAGACA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------AATGCATGGCA
CTTCGTTTACTGGCAGACCGTGAGCTATATTATCT-AGCCAGCTAGCCCCAAATGCTATATGTCCCATTCGCCGGCCATG
CACATGAATTCCTCTGTAGACGCCATGCTCTGAACTCCATCTGGATTCAGATGAATTAAGATCGCCCACTTGGCACAAAA
CGGCGCCCCAACATGCCTCCAATTCCAGCCAAGAAATAAGACTCACATGTTACCGGC----TTTGTGCTTGCCCATTGGC
TCGGTCTGCACTGCCAGAACGTACCGCATGCAGGTACGTGGAAATATACGTTCGCGTTGAATGTATCATGGCTTCGTGCC
GACGATCTGATCTGGCTAGCTTTGCCCGTGACCTAATGCGGCCAAGCGCGCGGCCACATGCGCGTCGTCACGGGCCACGG
TATCCCCACGCTATATAAGCGCTAGCCATCGCCC--AC-CGTGACACAC--CCAGACAACCGACTGCCCCC-CACACACG
CACACATCAAGCAGCAGCTGATCCACCAGTCGATCGATCCGACAGCTAGCTAGCCATGGCC---GCCGGGAGGAAGGTGA
CGATGAGCAGCGCCGGCGTGGCCGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGGCCGGGCTCAGG
GTCTGCAGCGTGGACAGGGACAGCGTCGTCAACAACTGCAAGTCCTACTGCACGGTGGGCAGCACGGAGGCCAGCCCCAG
CGGCGCGTGCTGCAACGCGGTGCGCGGCGGCAACTTCAAGTGCCTCTGCCAGTTCAGGAACGCGCTGTCCCCGGACATCG
ACGGCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGGCGGCCTCCTGCTAGTCACCGTCACGCACTAT--GC
AGCCCGATACGCGCCGGCCGCCGCGGTCCGCCGCCGGTCGCCGGTTGCACCAGTAGATCGTAACGTGGTGTTTTGCTGTC
AACTTTCAGTCGTTCGTAGGAGTACGTACGTTCTGGTCGGCTGGCTGATCCGAACGCGCTCCTGCGTGCGTGCATGCATG
CTTTGTGTTG----------------------------------------------------------------------
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----
>chr3D_921
AGCGAC--------------------------------------------------------------------------
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-------------------------------------------------GCGGCCAAATGCACGTCGTCGCGGGCCACGC
TACCCCCACGCTATATAAGCCCTAGCAATGGCCC--AAACGTGACACAC--CCAGATAATCAACTGCCCCCCCACACACG
CACACATCAAGC-GCAGCTGACCCACCAGTCGATCGATCCGGCAGCTAGCTAGCCATGGCCATGGCCGGGAGGAAGGTGA
CGACGAGCAACGCCGGCGTCGCGGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGGCCGGGTACCAT
GTCTGCAACGTGGACACGGACAGCCTGGTGAACAACTGCAGGTCCTACTGCGCGGTGGGCAGCAACGAGGCCAGCCCCAG
CGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGCAAGTACAAGGGCCTGCTGCCCAAGGGCATCG
ACGCCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGGCGGCCTCCTGCTAGTCACG------CACTAT--CC
AGCTCGATTCACGCCGGCCGACGCGGTCCGCCGCCGGTCGCCGGTTGCACGAGTAAATCGTAACGTCGTATTTCGATGTC
AACTTTCACTCGTTCGTAGGAGTACGTACGTTCTGGTCGGCTCGCTGATCCGAT--------------------------
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----
>chr3A_921
AGCGAC--------------------------------------------------------------------------
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-------------------------------------------------GCGGCCAAACGCACCTCGTCGCGGGCCACGC
TACCCCCACGCTATATAAGCCCTAGCCATCGCCC--AAACGTGACACACACCCAGACAATCAACGGCCCCC-CACGCACG
CACACATCAAGC-GCAGCTGATCCCCCAGTTGATCGATCCGTCAGCTAGCTAGCCATGGCCATGGCCGGGAGGAAGGTGA
CGACGAGCAGCGCCAGCGTCGCCGCAGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGGCCGGGATTCAT
GTGTGCAACGTGGACACGGGGAGCATGCTGAACAACTGCAGGTCCTACTGCTCGGTGGGCAGCAACGAGGCCAGCCCCAG
CGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGCAAGTACAAGGGCTTCCTGCCCAAGGACATCG
ACGCCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGCCGGCCTCCTGCTAGTCACC------CACTACCAAC
AGCT----------------------------------------------------------------------------
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>chr3B_962
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--------------------------------------------------------------------------------
-----CCACGCTATATAAGCCCTAGCCATCACCC--AAACGTGACACAC--CAAGACAACCAACTGCCCCA-CACACACG
CACACATCAAGC-GCAGCGCAGC------TCGATCGATCCGGCAGCTAGGTAGCTATGGCC---G---GGAGGAAGGT--
-GATGAGCAACGCCGGCGTCGCGGCCGCGCTGGTGGCGCTGCTGGTCGTGGCGGCGGCGTCGGGCGCGGCCGGGATTCAT
GTCTGCAACGTGGACACCGGGAGCATGGTGAACAACTGCAGGTCCTACTGCACGGTGGGCAGCAACGAGGCCAGTCCCAG
CGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGCAAGTACAAGGGCCTGCTGTCTAAGGACATCG
ACGCCAACCGCGTCATGCAGATCCCAGCCAAGTGCGGCTACGGGGCGGCCTCCTGCTAGTCACG------CATTAT--GC
AGCTCGATTCGCGCCGGCCGACGCGGTCCGCCGCCGGTCGCCGGTTGCACGAGTAAATCGTAACGTCGTATTTTGATGTC
AACTTTCACTCGTTCGTAGGAGTACGTACGTTCTGGTCGGCTCGCTGATCCTATCGTGC----------G----TGCGTG
CTTTGTGTTGGCCATGCATGCTACCTTTGTATCCTCTTCCGCTTTTCGTAAGTCATGTTGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>SNPs
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------S-----------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------S---S-
---------------------------------------------------------SSSS-------------------
---------S-------S-----------------------------------S--------------------------
------------------------------------------------S-------------------------------
S---------------------------SSSS--SS---------------------------S---SS----------S
----SSSSS-----------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-------------------------------------------------------S-------S----------------
------------------------------S-------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------S-----------------------------------------
----------------------------------------S-S-----S-S-----SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------S--------SS---------------S------------S---------------S----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----
-------------S-S----------------S-----------------S-------------SSSSSSS-SS-SSSSS
SSS-SSSS-SSSS--SSSS--S-SS-SS-S-S-S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S------S-----S---S----S---------S---------SS----S----SSSS-----------
--------------------S------------------------S-------S-----------S-------S------
--------SS-S--S---S-----------------SS--------------S-------SSS-----------------
-----S-S-------------S------------------S-----S---------------------------------
-------------------S----S-----S---S--SSSS-S-S--S-------S------------S--S-SSSS---
-----S----------S------SS--------------------SSSS----------------S---------S---S
S--------S--------S---S------S---S---S----S------------SSS--SSSSSSSSSSS----SS---
------------------SSSS------S-S------S-S--------------------SS---S-----S--------
--SSSSS-------------------------------------------------------------------------
----
>forward_778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AGACTCACATGTTACCGGCC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_1830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AGTAATTCCGG
ACGGAGGGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
