>input_sequence_74455
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-------------------------------------------------------ATGGACGTGCCGACCGCCGGACAA-
--GCCGCCGCTGTACCGCAGCGCAAGGCGTTGGAGTGGGAGGGCCGGGTGGTGTCCCCGGTGCCGACGGCGACGGCGGAC
GAGGCGTGGGCGCTGCTGTCGGACTTCCTGGCGTTCCACAAGTGGCACCCGCGCGTGGCGGTGTGCCGCCTGG---CGTC
CTCCGG---------CGCGGCGGCGCCCGGGTGCGTCCGCTACTGCGAGGGCACCCCGCCCGCCGACGGGACGCCCGCCG
ACTGGGCGCACGAGACGCTCCTCGAGCACGACCAGGCCCGCCGCTTCTTCCGCTACGAGATGAACGACAACAACATGGGC
TTCGGCGCCTTCTTCGCCGCGTTCCGCGTCGTCCCCGCCG------CGGCCGGCGGCTGCCTGCTGCGGTGGGAGTTCGA
GTGCGAGCCCGTGCGGGGCACGCCCAAGGAGGCGCTCGAGGCGCGGCTGCAGGCCGGGCTCGACGGAATGGCCGCACGCG
TGCACGAGCACCTCATGTCCGCGCGCGGGGCCGTCGCCGCCGC---------CGCGCCGCCGACCGCTGTGACTGCAGGG
CTGGAGGCCGCCGATGAGCTCAAGCTGGACAGCTCCATCGCGGCCTGA--------------------------------
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>chr3B_1_TraesCS3B01G160300
CGCCGACCAAAGAAGCAATCCCACCGACAACTAGGCAACCAACATCTCCAAATCCACACCGAGGACACCGCGAGCAAACA
AGACAACACCTTCACGAAGGAGAACGACATCAAGATCTCGTCGTTATCCGATCCGGAAACCCGTACCTAGGGTTTCCCCT
GATGCTCGAAGAGGGGCACCGATAACGACCATGGCATCGCCTCCAAAAAGGGAACGTCACTCGCGGGTGTCGCCACTGCC
AGCATAGGATGCAGGGATTTCTCCCTGTCCAAAATCCGAGCAATCCCAAGCCATCGAAGCACGAACCGGAGAAGAGGAAG
TCAATACAAGGGCCCACCGGCAAGCAGGGTCCCCCCCACTCCCCTCCCCGATTCACTCGGCTCGGGCGGCGCGAGGGTCG
GGAGCCACGGAGCAAGGAATGGAATTTTTCGGACGAGGAGCTTCTCGAGGGCTCGGACAAGTGGATCTAGAACTGAACCA
TCTCTGAGGAGCACACTACAAAGACACCTATCTTGTCACTTTTGCTGGTTGCATCGACTACGGATGGGAGCATCTGCTAT
GAAAACCGTGGGCACCCCTTAAGTTTAAGTTCTTTGTGTGGCTAGTATTCCGTGACCGGTGCTGGTCTTCGGACAGTTTG
GCAAACACGGCTAAGATTTTTTATTTTTTATTTTGCGGAAGGGGATAAAAAATTG-----TAATTCAGTGGTGCAGGTCT
TCGACTTGGAAATAAAAGAAAAATATATCGATGAAATGGACACTAATCTAATCCATATCCAAGTGAATGGAAGTGGCCAC
CCCCACAAACATCGTGTCAGCCGCACAAGTGCACCTATCTTGGCCGATCCGGGCTGCCATAACCTAAAACCCCGAATAGA
GCGCGGGCTCATCTATAAATTGCGCTCGGACATCACAGCGAGGCATCA---TATGCC--CACTCACTACTTGGCTCGTAC
TGTCGAA-----TACACTACAGCACCGAAAAAGCTGCCAAGGGGCTCCGTCGTCCATGGACGTGCCGACCGCCGGACAA-
--GCCGCCGCTGTACCGCAGCGCAAGGCGTTGGAGTGGGAGGGCCGGGTGGTGTCCCCGGTGCCGACGGCGACGGCGGAC
GAGGCGTGGGCGCTGCTGTCGGACTTCCTGGCGTTCCACAAGTGGCACCCGCGCGTGGCGGTGTGCCGCCTGG---CGTC
CTCCGG---------CGCGGCGGCGCCCGGGTGCGTCCGCTACTGCGAGGGCACCCCGCCCGCCGACGGGACGCCCGCCG
ACTGGGCGCACGAGACGCTCCTCGAGCACGACCAGGCCCGCCGCTTCTTCCGCTACGAGATGAACGACAACAACATGGGC
TTCGGCGCCTTCTTCGCCGCGTTCCGCGTCGTCCCCGCCG------CGGCCGGCGGCTGCCTGCTGCGGTGGGAGTTCGA
GTGCGAGCCCGTGCGGGGCACGCCCAAGGAGGCGCTCGAGGCGCGGCTGCAGGCCGGGCTCGACGGAATGGCCGCACGCG
TGCACGAGCACCTCATGTCCGCGCGCGGGGCCGTCGCCGCCGC---------CGCGCCGCCGACCGCTGTGACTGCAGGG
CTGGAGGCCGCCGATGAGCTCAAGCTGGACAGCTCCATCGCGGCCTGAGCTCTGAGCACTCGACGCGCACGACAGGCCCG
GTTCCACCTCTGTGTGCACGTACC-GACG--------------------------------------ACGTACGTTTGGT
TGTGATCTCGTCTCGTTCTTTTCTCGCGGTACTAT----GTTGTCTGATGATATTTTATCTTTGTTTTGTTCTGG-----
----GCCTTTGTCTGCTTGCCGTTATGTATGTACGCGTACGTACCGTTTACTACAATACGGTAGTGCCCC----TATACA
GCTGTACCGGGAATAAATGTATGATATCACTCGTAGTAATATATGCGAAAGTGATTAGTGCATGTGCAGCCTTTTTTCCA
TCTTAATACTACTGCCTCCGTTTCTGAATATAAGCCTTTTTTTAGAGATTTCCCTAGAGACTACATACAAATACATATAG
ACATATTTTAGAGTGTAATTTCACTTATTTTGCTGCTACATTGAAATATCTAAAAGGGCTTATATTTAGAAATGTAGGGA
GTACTCACTTATGAAAATATATGGTTTTGTCTTGTGCCCTAGTTATTGCACACGTAAGTGACTCAATCAAAATAAAAAAT
AAAGATAAAAAAACTAAGAAAATGCTTGCAGGAATCTTAACGTAAAATCAATGATATAGGATTTAGATGTGCAGTAGTTA
AATCATATCTAGACGTGCTTTAGCAAAACTAAAAATATAATTTATGGCATGGATTTATAGGTCTTTGATTTGATCACCAC
AAAAATATTTTGTCTGACATAAAAAATAAG-TTTATCGCTCTATGCGGAGACCAGGGGTTATCCTCCTTTTGAAAAAACT
ATATAACATTTTTACATTTGTTGTCTAATGGAGTTTTAATACATCTTTTGGAATATAATATATGTTTCACAATTTAAATT
GACAAACTAAATTCCCATTTCCGGCTTATATTCCCATCCGGACGAAGTACTTGTTTTCTTTGTTATGTCTTGAACAATGC
ACGGGTGTATCTTTTTTACCCTCTATGGTATGTTAAAAGTATAAATACTACT-TATCTTATTTCAA
>chr3D_647
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------ACGGCTAAGAA--TTTGTTTTTTTTTTTGCAGCAAGGGATAAAAAACATTGTAATAATTCAGTGGTGCAGGTCT
TCGACTTGGAAATAAAAGAA-AAAATATCGATGAAACGGACAGTAATCTAATCCATATCCAAGTGAATGGAAGTGGCCG-
CCCCACAAACATCGTGTCAGCCGTACAAGTGCACCTATCTTGGCCGATCCGGGCTGCCATAACCCAAAACCCCGAACCGA
GCGCGCGCTCATCTATAAATTGCGCTCGGACATCACAGCGAGGCATCA---TACGCCCACACTCACTACTTGCCTCGTAC
TGTCGTA-----TACACTACAGCGCCGAAAAAGCTGCCAAGCGGCTCCGTCGTCCATGGACGTGCCGACCGCCGGACAA-
--GCCGCCGCTGCACCGCAGCGCAAGGCCTGGGAGTGGGAGGGCCGGGTGGTGTCCCCGGTGCCGGCGGCGACGGCGGAC
GAGGCGTGGGCGCTGCTGTCGGACTTCCTGGCGTTCCACAAGTGGCACCCGCGCGTGGCGGTGTGCCGCCTGGCGTCGTC
CTCCGG---------CGCGGCGGCGCCCGGGTGCGTCCGCTACTGCGAGGGCACCCCGCCCGCCGACGGGACGCCCGCCG
ACTGGGCGCACGAGACGCTCCTCGAGCACGACCAGGCCCGCCGCTTCTTCCGCTACGAGATGAACGACAACAACATGGGC
TTCGGCGCCTTCTTCGCCGCGTTCCGCGTCGTCCCCGCCG------CGGCCGGCGGCTGCGTGCTGCGGTGGGAGTTCGA
GTGCGAGCCCGTGCGGGGCACGCCCAAGGAGGCGCTCGAGGCACGGCTGCAGGCCGGGCTCGACGGCATGGCCGCACGCG
TGCACGAGCACCTCATGTCCGCGCGCGCGGCCGTCGCCGTCGCCGCAGCCACCGCGCCGACGACCACCGTGACTGCAGGG
CTGGAGGCCGCCGATGAGCTCAAGCTGGACAGCTCCATCGCGGCCTGAGCTCTGAG------------------------
------CCTCTCTGAGCACTCGACGGACG--------------------------------------ACGTACGTTTGGT
TGTGATCTCGTCTCGTTCTTTTCTCACGGTAC----TACGTTGTCTGATGATATTTTCTCTTTGTTTTGTTCTGG-----
----GCCTTTGTCTGCTTGCCGTTATGTATGTGCGCGTACGTGCCGTTTACTACAGTACGGTTGGGCCCC----TATACA
GCTGTACCGGGAATAAATGTATGATATTACTCGTAGTAATATATGCAAAAGTGATCAGTGCATGTGCAGCCTTTT-TCCA
TCTTAATACTA---------------------------------------------------------------------
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GTACTCGCTTATG-------------------------------------------------------------------
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------------------------------AAAAATATAATTTGTGGCATGGATTTATTGGTCTTTGATTTGATCACCGC
AAAAATATTTTGTTTGTCATAAAAAATAAGGTTTATCACTCTATGTAGAGACTAGGGGTTATCCTCCTTTTTGGAAAAAA
AAAT----------CATTCGTCGTCAAATGGAGTATTAATCATATTTTTGGCATATTATATATGTTTCACAAGTTAAATT
GACGAACTAAATTCCCACTTCTGGCTTAACTTCCCATCCGAAGGAAGTACTTGTTTTCTTTGTTATGTCTTGAACAATGC
ATGGGTGTATCTTTTTTACCCTCTATGGTATGATAAAAGTATAAGTAGTGCTCTATCTCATTTCAA
>chr3A_759
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-------------------------------------------TAATCAAACCCCTATCCAAGTGAAAGGAAGTGCCCA-
CCACACAAACATGGTCTCAGCCGTACAAGTGCACCTATCCCGGCCGGCCCGGGCTGCCTGAACCCAAAACCCCAAGCCGA
GCGCGCGCTCATCTATAAATCGCGCTCGAACATCACAGCGAGGCATCATCATACGCCCACGCTCACCACTTGGCTC--AC
TGTCGTACTCGGTACCCTACAGCGCCGAAAGAGCTGCCAAGGGGCTCCGTCGTCCATGGACGTGCCGACCGCCGGTGGAG
CCGCCGCCGCCGCACCGCAGCGCAGGGCCTGGGAGTGGGAGGGCCGGGTGGTGTCCCCGGTGCCGGCGGCGACGGCGGAC
GAGGCGTGGGCGCTGCTGTCAGACTTCCTGGCGTTCCACAAGTGGCACCCGCGCGTGGCGGTGTGCCGCCTGGCGTCGGC
GTCGCCCTCCGGCGCCGCGGCGGCGCCCGGGTGCGTGCGCTACTGCGAGGGCACCCCGCCGGGCGACGGGGCGCCCGCCG
ACTGGGCGCACGAGACGCTCCTGGAGCACGACCAGGCCCGCCGCTTCTTCCGCTACGAGATGAACGACAACAACATGGGG
TTCGGCGCCTTCTTCGCCGCCTTCCGCGTCGTCCCCGCCGCCCACGCGGCCGGCGGGTGCGAGCTGCGGTGGGAGTTCGA
GTGCGAGCCCGTGCGGGGCACGCCCAAGGAGGCGCTCGAGGCGCGGCTGCAGGCCGGGCTCGACGGCATGGCCGCGCGCG
TGCACGAGCACCTCATGTCCGCGCGCGCTGCCGTCGCCGCAG---------CCGCGCCGGCCCCCGCCGTGGCCGCAGGG
CTGGAGGCCGCCGACGAGCTCAAGCTCGACAACTCCATCGCGGCCTGAGCTCTGAGCAG---------------------
------------TGAGCACTCGATGTACGCACACGGTTCCACGTCTGCGTGCACGTACCGACGACGCACGTACGGTTGGT
TGTGATCTCGTCCCGTTTCTTTCTCGCGGTACTACGTACGTTGTCCGATGATATTTTCTCTTTGTTCTGTTCTGGCCCTT
CTGGGCCTTTGTCGGTTTGCCGTTATGTATGTGCGGCTACGTACCGTTTACTACAGTACGGTAGTGCCCTTATATATACA
GCTGTACCGGGAATAAATGTATGATATTACTCGTA-----ATATATGCAAGTGATCAGTGCATGTGCAGTCTTTT-ACAA
TCTTA---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------SSS---S------S------S-S-S-----------SSS-------------------------
--------------------S--S------------S-----S------------------------------------S
-----------------------S----------------------------------------S-----------SS--
-----S-----------------------------------------------S--------------------------
-----S-----------------S--------------------------------------------------------
------------S---------------S-S----------------------------------S--------------
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------------------------------------------------------------S-------------------
------------------------------------------------------------------S-------------
---------------------------S-------------------------------S-------S------------
----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----S--S----SSSS---------------------------------------------------------
----------------------------------S----------------------S----------------------
--------------------------------S----------------------S------------------------
---------------------------S---------------------------S-------------------S----
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------------S-------------------S-
-------------S--S--------------------S-------SS-----S------------------SSS----SS
-S--SSSSSSSSSS----S--S---S--------S-----SSSSS------S----S---------------S-------
---S-------------S---S------SS----------S-S-------------------------------------
-S------------------------------S-----------S--S-S--------S-------
>forward_88
--------------------------------------------------------------------CGCGAGCAAACA
AGACAACA------------------------------------------------------------------------
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>reverse_1686
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-----ACCTCTGTGTGCACGTACC--------------------------------------------------------
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