>input_sequence_74453
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----------------------------------------ATGAGACCCATGGCTTCCTCCTGGAACTGGAAGTTGCTTT
CCCTCGTCTTCCTGCTGGCTAGCACGGCGGCGTGGGGCATGGCCCACGCCCACGGCGGCGGGCTCAAGCACATCCACCTG
TACATGCACGAGACCTTCACGGGCCCGAACGCCACGCTGTTTGCGGTGGTGCCGCCCCTGCTGGGCGTGGGCGACAACAC
CAGCATGTTCGGGATGGTCGGAGTGCTGGACGACGAGCTACGCGACGGCTCAGACCCGAGCAACTCATCGCTGGTGGGGC
GGTTCCAGTCCCTCTTCGCCTTCGCGGGGCTGGTGACGCCACCAGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCC
GGGGAGCACGCCGGGAGCACGCTGGTTATGGTGGGCAGCATCGTAAGCTCAGAGGGGCCCTACGAGACCGCCGTGGTGGG
CGGCACCGGCGCCTTCAGGATGGCGCGCGGGTACTGCGTTCTCAAGGCCGTGTGGAGCCCGACGCCGGTGTCCACCGTTT
ACGAGGTAAACCTGTTGGTGAAGATGGAGGGAAAACTTTTGGCCAAGATGGATGCCTGGAAACGTACTACGTATGCACTG
TGA-----------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G030400
ATACTTAATTACCTTGAGGCGATTCTACTCCCTTTTTGAAAGTAATACATATGTGGTGCTGTGGTGGTTGAAAGTTCCAT
GTGAGTGATATTTTGCCACAGAGGCATGTGCGACAGACAATGCCTACAATGTTGCCTGTCCTACCCAAGAAAAACACCAA
TCAACCGAAGCCAACATTAATTTCAGCCTGTAAAATTTCATATCAACGAGCAGGCAGCTTGCAACGACATCATAAAAAAG
ATCTCGGACGATTCGTCAGAGCACGAAAGCCTGTTACAAAATGGATTCCTATTTGATGAGTATCTAACAGGATGGATAAG
CTCACAAACCACTCTTGGTCATATTTCTTTTTATAGAGAAAGAGAGGAAGCCTTACAAGGATTTAGGGTGTCGTAACATC
GTCTTGCAGCTGATGTATGATTGCAATCAACATGTACGGGTATTTAGCTAGTAAACTAAAAAAAATCACCGGCTGCGGCT
TTTTTTTTATGCATTTTGTTATTTTTAGACTCTGTTGGTGGACCCGAGACCTTGTTTCCATATTTTGATTTAATAAATTG
GCTGCATGCATCACTCTGATGCAGATGTCAGAGGTTATTCTCCTTTCCGAAACAAAAGAAAAAAAGCTAGTAAACTAATG
ATAGATACTGAACTAAAATCATGACACTTATTTTATTTTGAATCGGCAGGAATATATAACTATTAAGTAAAGCATGAGCA
AAATTTATTTGAAAGAATATGCTGCCTAAATTATTTCCTTAGTTAGGATTTGATGACCACACATTGATCAAGCCTCCCCT
TATTAATCTACTACTAGGGTGGGGTTGCTTTGCTCGATAGCCAACAAGCTGATCGAGGTAGACGACTAGCATCATTATAG
CTAACATTTCAACCACCACATATATAGAGTATATATTACTTCAGGGTGTATCTGAGCTGCGAGCCCCGGCAATTAACACC
TACTGATCCTACCTACACACGTTGGTCTGGTCTGATCGCCATGAGACCCATGGCTTCCTCCTGGAACTGGAAGTTGCTTT
CCCTCGTCTTCCTGCTGGCTAGCACGGCGGCGTGGGGCATGGCCCACGCCCACGGCGGCGGGCTCAAGCACATCCACCTG
TACATGCACGAGACCTTCACGGGCCCGAACGCCACGCTGTTTGCGGTGGTGCCGCCCCTGCTGGGCGTGGGCGACAACAC
CAGCATGTTCGGGATGGTCGGAGTGCTGGACGACGAGCTACGCGACGGCTCAGACCCGAGCAACTCATCGCTGGTGGGGC
GGTTCCAGTCCCTCTTCGCCTTCGCGGGGCTGGTGACGCCACCAGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCC
GGGGAGCACGCCGGGAGCACGCTGGTTATGGTGGGCAGCATCGTAAGCTCAGAGGGGCCCTACGAGACCGCCGTGGTGGG
CGGCACCGGCGCCTTCAGGATGGCGCGCGGGTACTGCGTTCTCAAGGCCGTGTGGAGCCCGACGCCGGTGTCCACCGTTT
ACGAGGTAAACCTGTTGGTGAAGATGGAGGGAAAACTTTTGGCCAAGATGGATGCCTGGAAACGTACTACGTATGCACTG
TGAAATGTTATACTGCATGTTGTTACTACTAGTTACCCATGTT-AATGTTCAACTCCGGCAATTTGATTCTTAGAATTGT
AAGCATT---------------GTCTTTCTGGGAGACGCATATTATTCGAATTTATGAGTAATATCAGTTTATGGTAACT
CAAGTGTTATATGCGATTGCTGTTGAGACATTGCTAGCACAAAAGAATGCATTGTTGAAACTTGAAAGACTGTGCTATGG
AGTTATGCTGCATGAACCCTCTTG--AAAGACTGGCCAACTGGCAAGTAGTTCTCAT----------------------C
GTGTCGTATGTTTCCTTCCTCCGG--------------------------------------------------------
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--------------------CCTGTAGCAGACTTGCTCTTCTCGGTGTATAAGATGACGACGATGATCATAGTAGCAGTG
TGCCTGATC-----------------------------------------------------------------------
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--------------------------GGCTTAATTAGATCACTTTGTTGAGAGGTGGGTTGCATGCTCAGAAAAATAAAA
TTAGTGGGTTGATGAGGTGGCATGTACGCCAGTGGCGGAGCTTGACCCAAAAACCTGGACGGGCCGGTTGTAGGAAATGA
CTGTTGGGATTGTGTTTCATGGCCCAAAACTACATATACACTGCAGAAAACCGCATGGGCTGGGCAGGCCACGGCCCATT
CGGCCTTGCCGTAGCTCCGCCACTGATGTACGCATGTTGAGATAAATAAAAGTAACGGGGATCAACTACTTCAGCATATG
TCTAGGAGGTAGTAAAGACCACATCACATTTGACGATTGTTGCGAGATTTAGGCATCGATATGAAAATTTGATGTCTTAC
ATCACTTTGAGCACACCACTCTGAAGGCCCCGTCTCCTACTTCTCTGTATTACACAGAGTAGAGTAGGTCCACGGGAAGG
AGGAGTGGTAACTGAATTGCTGATCCTTCCCAAGCCTAGTGGTATCTATGCATATGCTGCCAAGTTGACGGCCAACTTTT
TTGAACAAAGTATAACGCTCATACATACGCACAGAGTGATGTCCATTGTCGTGTGCGTGACTATCCTATACCAAAGTGTT
CTCATGATAGCTCCTT
>chr1D_1093
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----------------------------------------------------CGCCGGCGGGTTCAAGCACATCCACCTG
TACATGCACGAGACCTTCACGGGCCCGAACGCCACGCTGTTTTCGGTGGTGCCGCCCCTGCACCG---GGGCGACAACGC
AAG---GTTCGGGATGGTCGGAGTGCTCGACGATGAGCTGCGCGACGGCCCGGACCCGAGAAACTCATCGCTGATCGGCC
GGTTCCAGTCCCTCTTCGCCTTCGCGGGGCTGGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCC
GGGGAGCACGCCGGGAGCATGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGGCCCTACGAGACCGCGGTGGTGGG
TGGCACCGGCACGTTCAGGATGGCGCGCGGGTACTGCGTTCTGAAGGCCGTGTGGAGCCCGACGCCGGAGTCCACCGTGT
ACGAGGTAAACCTGTTGTTGAAGATGGGGGGAAGCCTGTTGGCGAAGATGGATGCCTGGAAACGTAC---GTATGCACTG
TGAAAT--------------------------------------------------------------------------
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>chr1A_1093
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----------------------------------------------------CGCCGGCGGGTTCAAGCACATCCACCTG
TACATGCACGAGACCTTCACGGGCCCGAACGCCACGCTGTTTTCAGTGGTGCCGCCCCTGCACCG---GGGCGACAACGC
AAG---GTTTGGGATGGTCGGAGTGCTCGACGACGAGCTGCGCGACGGCCCGGGCCCGAGAAACTCGTCGCTGGTCGGCC
GGTTCCAGTCCCTCTTCGCCTTCGCGGGGCTGGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCC
GGGCAGAACGCCGGGAGCACGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGCCCCTACGAGACCGCCCTGGTGGG
CGGCACCGGCGCGTTCAGGATGGCGCGCGGGTACTGCGTTCTGAAGGCCGTATGGAGCCCGACGCCGGAGTCCACCGTGT
ACGAGGTAAACCTGTTGTTGAAGCTGGGAGGAAACCTGTTGGCAAAGATGGATGCCTGGAAACGTAC---GTATGCACTG
TGAAAT--------------------------------------------------------------------------
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>chr1D_1096
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-------------------------------------------------------CGGCGGGTTCAAGCACCTCCACCTG
TACATGCACGAGACCTTCACGGGCCCAAACGCCACGTTGTTTTCGGTGGTGCCGCCCCTGCACCG---GGGCGACAACGC
AAG---GTTCGGGATGGTTGGAGTGCTCGACGACGAGCTGCGCGACGGCCCGGACCCGAGAAACTCGTCTCTGGTCGGCC
GGTTCCAGTCCCTCTTCGCCTTCGCGGGGCTAGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCC
GGGGAGCACGCCGGGAGCACGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGCCCCTACGAGACCGCCGTGGTGGG
CGGCACCGGCGCGTTTAGGATGGCGCGCGGGTACTGCGTTCTGACGGCCGTGTGGAGCCCGACGCCGGAGTCCACCGTGT
ACGAGGTAAACCTGTTGTTGAAGCTGGGAGGAAACCTGTTGGCAAAGATGGACGCCTGGAAACGTAC---GTATGCACTG
TGAAATGTTCAACTG-----------------------------------------------------------------
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>chrUn_1439
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------------------------------------------------------------------------------GG
CGGCACCGGCGCGTTCAGGATGGCGCACGGGTACTGCGTTCTTAAGGCCGTGTGGAGCCCGACGCCGGTGTCCACCGTGT
ACGAGGTAAACCTGTTGGTGAAGACGGAGGGAAAACTTTTGGCCAAGATGGATGCCTGGAAACGTACTACCTATGCACTG
TGAAATGTTATACTGCATGTTGTTACTACTAGTTACACCTGTGAAATGTTCAACTCCGGCAATTTGATTCTTAGAAATGT
AAGCAAGAAAAATGTAAGCATCGTCTTTCTGGAAGACGCATATTATTCGAATTTATGAGTGATACCAGTTTGTGAAAACT
CAAGTGTTATATGCGATTGCTGTTGAAACATTGCTAGCATAAAAGAATGCATGGTAGAAACTTGAAAGAGTGTGCTATGG
AGTTATGCTGTATGAACCCTCTTCAAAAAGACTGGCCAACTGACAAGTAGTTCTCAGTGTGGCTAGTAGTAGTTCTCAGC
GTGTCGTATGTTTGCTCCCTCCCACGGACGAAGCTAGAAAAAAGGTTTGATGGGGTCATGTCTATGACAGTGGGGCCATC
TTCCATAAATGAATAATCATTAGTACTAAACTAATGAAGGATTGCCCAATTTCATTGGGGTCAATTGACCCCAATGCTTA
CCAAGCAGCTCCGTCCCCCTCCTGTAGCAGACTGGCTCTTCTCAGTGTACGA---GACGACAACGATGATCATAGCAGTG
TGCCTAATAGGCTGACGATGACCGTTCAGGTCCAGGTCTCCAGTATCATCGACAAGTAAATTGCTGCGAAAATGACGAGT
CCTTTGGCACATATGGACCATTACAAATAAGTGAGCAGCTGTAGTAGCGTCAGTCTCAACAAGAAATTGAGTTGGCGTTT
GAGTCATTGTCATGGAGTACTGATGGCTCTGTTGTACCATATCTCTGGAACATCAGTCGTACCATTATCTCTGAAACTTC
AGTCAATTTCCATGTGATTGTAGACCTACAGTCCAGTCTCTGTTGTGAACATCAGCAGCAACCTCACTCTCAGCTCTGGG
TAAGAAAATTTGAGTTGGATTTCTTGGTGTCAGGCTGTCAGCGATATAAAAACCATTCAAATGACTTGGAAGCCTAAAAG
CTAAGAAAGAAACCTCCTGCCTTATGTGTTCTTCCGATTACCAATGCGGCTGTAGATTCGCTGCTGCCGTATGTGTCCGG
CATCTTCAGCCGGAAACAGCCATTGCAGTAATCATGAATGTGACTGTAGACATTCTGCGAAAATGAAATTCCGGGTCCAG
TATCATCAACATCAAGTAAATTGCTGGGAAAATGACTAGTCCATCCTTTACATATTCAGTGGACATCAGTATTAGCGTGA
CACATATGGACGATTGCAAAAGCAGTGGACAGCAGTCAGTTGAGCAGTTGAGCAGCAACCTCACGCCCAGGGCAAAGTAA
GTCCTATATCTGTCAACCAAATTGTCACAGCAATCATTTCAACCAAATATATACAACAAATTATTTCAAATGTGTAAACA
TCGAAATAACTTCTTGACCGACACCAAAACCGTGCTTGCAAGGGTTCGCATTGGCCGAATGGGTGCAGATATGGTTTTAT
CTGATTCTCTTCCATGCAACAGATCAACAATTTGTACAAAAATCTAAAGCACCTTCCTTCCATTCAGTTCGAAATAAGTG
CTGGGCGGAAACATAAAAGTTTTCGTGATGCTAGGGCGGAAACTCTACTGGCTGAAACGAATAGCTGCCAAGCGCAAGCA
TGTAGAACAAGCAAGACAGGCCAATATCATTAACATCAAGTAAATTGCTGCAAAAATGACGAGTCCTTCGAAATCAGTGG
ACATCAGTAGCAGCCTCAGTCTCGGGTAAGTTCAAAACAAAACAAAAAAAACTCCAGCAAGTCCAGTCATATAAGCGGTG
CACCGACTTTGAATTCCAGCCGAGATGCACACAGATAGTCCAGCTGAGAATGGCTTGGGATTTCAGACAGAGTAGCTCTC
AAGGAATTCCAGCTGAGATCAATGAAAAACTCCTGTGGTGTTGGTGTGGTGCCATTGCAAAAGCAGAGGACAGCAGTAGG
AACCCCAGTCAGTCTCAGATCAAGAGAAGTCAGTCGTATAAAACTCTCAAAATGACTTGCAAGTCCAGCAGAAATTTACA
AGTAACTTGACCGCAGTAGCAACTTCACTTCCAGGGTAAGAAAGCCCCGTATCTGCCATCCAAATTTGTACTGTACATCA
TTAATTTGCTTTGATCGTGCCTACCAGGCTTAATTAGATCACTTTGTTGAGAGGTGGGTATCATGCTCAGAGAAATAAAA
TTAGTGGGTTGATGAGGTGGCATGT-------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------S-----------------
------------------------------------------S------------------SSS-SSS----------S-
S--SSS---------------------S-----------S---------S-S--------S--------------S--S-
----------------------------------------S--S------------------------------------
--------------------------S-----------------S-----S-----------------------------
------------S-----------------------------S-----------------------------------S-
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------------------------------------S-S---S---------------------------------S---
-----SS-------------------------S---------------------------S---S------S--SS----
--------------------------S------------S------------S--S-------------S----------
----------S------------S------------------S-------------S-----------------------
-------------S--S-----SS--------------------------------------------------------
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---------------------------------S---------S-----SS-SSS------S-S---S--SS--------
-----S--S-----------------------------------------------------------------------
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-----------------------------------------------------------SS----------S--------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_995
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---------------CACACGTTGGTCTGGTCTGA---------------------------------------------
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>reverse_3821
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------------------------------------------------------------GGGCCGGTTGTAGGAAATGA
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