>input_sequence_74433
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--------------------------ATGGAGCAAGGGAGGGAGGAGATGATGGGGAGCCTGTGCGGGAGGCGGCCGAGG
GCGGAGACGCGCCACCCGGTGTACCGCGGCGTGCGGTTCCGGGCGGGGAAGTGGGTGTCGGAGATCCGGGAGCTGCGCAA
GCACAGCAGGATCTGGCTCGGCACCTACCCGACGCCCGAGATGGCCGCGGCGGCGTACGACGCGGCCGCATTGGCCCTGC
GTGGCGCGGGGACGGCGCTCAACTTCCCGGACGCGGCCAGGTCGCGCCCGGCGCCGGCGTCCATGTCCGCCGACGATGTC
CGCGCTGCGGCGGCCGCTGCCGCCGCGTCCGCGATGGGCAGCACCTGGGCTCCTCATCGGGGCGACCAATGCTACGGTGA
TCAGCTGCCTGGAGGCGGCGAGTCGAACAGGCGTGACGACGTGATCGGCGTCGTGGACGAGGACGAGGACGACGTGTTCG
AGATGCCGCGGCTGATGGTGAGCATGGCGGAGGGGCTGATGATCAGCCCGCCGGTGCTGGGCACAGCGGCGGCGGACGGT
TGCTCGGCGGCGTCGTACTACGCGGAAGCTGAGGATGAGGACGCCGTGAGCTTGTGGGATCACTCTTGA-----------
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>chr1D_1_TraesCS1D01G188700
CACGCCTCCCGATATCCATTCGTTGTCCCCTCAAAAGAAAAAGAAAATCCGTTCCTTGTTCCCTACAAAACCAAAACCAT
GTTCATCTGTGAACATGCATGCATGCATCCATATAACGGCTGACATTCTTTCACCCCTACGCCACCGCGTCCGAACGACC
CCAAATCGCTACCACACACTGCTAAGCCCAAGCACGAACATGTCACGCGGCGCGAAAATATCTGACCGCCCACCGGCGCA
CGTCCCTACCCCGT----------------------------AATCTAGTACTGGATATGTTAGGTGGCAAGAGAACCAA
AGAATCATGCACCATCATCATCGCCTACTCATCGATC----GTTGGTTCCATCTCTCACTTTCGCCTTTCCATAAAAGAT
AAAACCCCTATTATATTGTCCTTGAACGGGTCAACACAGGTG---TTGGAGTATCGGTGATG---TATCCGGCAGTCAAC
TCCGATGGCCACTCCGGCAGCCCGGCGTGCCGCCACCTGGATTTTGATTCGTAACAACCCGGTAATGATCTAATGATGTC
GTACTAA-CATCGCCGCGCACTACCCCAAAAGCGGCTCTCTGAGCCTTAGATTGCCCCACC-------TATGTGGCGAGC
CTCCATTGGGCGGCCCGTGCCAAAGCCTGAAAGAGCCACTCCTTTTTGCTCCCTGTGCTTCACAGCTAATCCCTAGCTCG
GCATCGATCGAGCGAGCTCGCAAAGCTGAAAACCGCGTCTGTTTTCACCAACTCCGGCCGGTTCCCAGCTTTTAAACCCT
CCTGAAACCCCCATCTGGATTAGCGTACTCGAGCGCTATATATGGTGGTCCGAGTATCTGCTAATTGACATTGCTAATAT
TGTTAG---CTGGCTTGTTCACTAGCTTGTTTGCTTTGCTGCATTCCTCGTGCA-----GCCCGGTTGTGTGCATGCTGG
TCAGTGCATTG-------TACGTAGTGCTCTGCATGTCTTGGTAGCCTGGTAGGGAGCGTGTCGTACCGGACGGGTG--A
GTTGGCTCGTGATT---AGTACGTTAATGGAGCAAGGGAGGGAGGAGATGATGGGGAGCCTGTGCGGGAGGCGGCCGAGG
GCGGAGACGCGCCACCCGGTGTACCGCGGCGTGCGGTTCCGGGCGGGGAAGTGGGTGTCGGAGATCCGGGAGCTGCGCAA
GCACAGCAGGATCTGGCTCGGCACCTACCCGACGCCCGAGATGGCCGCGGCGGCGTACGACGCGGCCGCATTGGCCCTGC
GTGGCGCGGGGACGGCGCTCAACTTCCCGGACGCGGCCAGGTCGCGCCCGGCGCCGGCGTCCATGTCCGCCGACGATGTC
CGCGCTGCGGCGGCCGCTGCCGCCGCGTCCGCGATGGGCAGCACCTGGGCTCCTCATCGGGGCGACCAATGCTACGGTGA
TCAGCTGCCTGGAGGCGGCGAGTCGAACAGGCGTGACGACGTGATCGGCGTCGTGGACGAGGACGAGGACGACGTGTTCG
AGATGCCGCGGCTGATGGTGAGCATGGCGGAGGGGCTGATGATCAGCCCGCCGGTGCTGGGCACAGCGGCGGCGGACGGT
TGCTCGGCGGCGTCGTACTACGCGGAAGCTGAGGATGAGGACGCCGTGAGCTTGTGGGATCACTCTTGA-------TCGA
TCACGTAATGGAGATAGTGGAGGAAGGTGTGACTAAGACCGATAGGGACGCGCGCCATGTGC-----CCATGACCTCCTG
GTGGTGGTGATGTGGGATCGCCCGTGATGTGGACGGACGAATGTTTGTTGCCCAAACGTATAATATGTACGCTGTGTAAT
GCGCCATGTACGTAGCATGGATGTGAAATGGATGGTGGAGACACAACATATGGATACAGACATACTACTAGTTATAGTGC
CATCTTCTTCTTCAATTCATTTATATTTATAGTCTCTGGATTATTA-TTAAAAAATCAAACATTTCGGGCGTATACATAA
GGATGTAATGTATATACATGTTTGCCACCGGCGTGTCTCTGTGTTTGTGCTTGGTGTTCGTCTTTTGAGCGAAGAGGTTT
GTATCTGAGTGCAGGAGTGAGGGGGAATCAAGCCAATTTCACCAACAGAGGGGACATGTACCAGAGGAATGGACAAGACA
GAGACAATTTTAACTCTAGAGCTAATTTGGATTGTGTGAGGAATTCAGTGGGGGAAACACCAGTGCCACTACACAACAAC
ACTGATGCAATGGCACGTAAACTGCCGGGACAAAGTACTTTAAACGAGAGGCTATCTGCCGGGACAGTATTTCTCCCGGC
AGATAGAACCGCCACGAGAACGGCTGCCGGGGATTACTTGTCCCAGCAGATACATGATTCCCGGCAGTTTATCTGCCCTA
GCGCATTAATTTGCTGGCAGTTTACTTTCTCCCGGCAGATTAGTCTGGACACATGAAACTTCAATTACCGGCAGTCCTAC
TGCATGCATTGTGCAACAAATGCAAAAACCCTGGACATGCACCAAAGACTGCATGTTGGAGCACTGTGTGATCTGTGGGA
AGAAAAATCATGTGACTGATGACTGCAATTGGCTCAAGCAAATGAAACCAGTTCCTAAGTTTGTTGGATATGCTGCAAAA
GGTCTTGGTGTGCTGTTGGTACAGAGCTCAAAAGATGTTCTT
>chr1B_1
CACGCCTCCCGATGTCCATTCGTTGTCCCCTCAAAAGAAAGAAAAAATCCATTCATTGTTCCCTACAAAACCAAAACCAT
GTTCATCTGTGAACATGCATGCATGCATCCATATAACGGCTGACATTCTTTCACCCCTACGCCACCGCGTCCGAACAACC
CCAAATCGCTACCACACACTGCTAAGCCCAAGCACGAACATGTCACGCGGCGCGAAAATATCTGACCGCCCACCGGCGCA
CGTCCCTACCCCGTAATCTAGTACTGGATTTTTTTTTGACAGAATCTAGTACTGGATATGTTAGGTGGCAAGAGAACAAA
AGAATCATGCACCATCATCATCGCCTACTCATCGATC----GTTGGTTCCATCTCTCACTTTCGCCTTTCCATAAAAGAT
AAAACCCCTATTATATTGTCCTTGAACGGGTCAACACAGGTGTTGTTGGAGTATCGGTGATG---TATCCGGCAGTCAAC
TCCGATGGCCACTCCGGCAGCGCGGCGTGCCGCCACCTGGATTTTGATTCGTAACAACCCGGTAATGATCTAATGATGTC
GTACTAAACAACGCCGCGCACTAACCCAAAAGCGGCTTTCTAAGCCTTAGATTGCCCC-CC-------TATGTGGCGGTG
CTCCATTGGGCGGCACGTGACAAAGCCTGAAAGAGCCACTCCTTTTTGCTCCCTGTGCTTCACAGCTAATCCCTAGCTCG
GCATCGATCGAGCGAGCTCGCAAAGCTGAAAACCGCGTCTGTTTTCACCAACTCCGGCCGGTTCCCAGCTTTTAAACCCT
CCTGAAACCCCCGCCTGGATTAGCGTATCTGCC----------------------ATCTGCTAATTGACATTGCTAATAT
TGTTAGTAGCTGGTTTGTTCACTAGCTTGTTTGCTTTGCTACGTTCCTCGTGCAGCTCGGCTCGGTTGTGTAAATGTTGG
TTGGTTAGCGCAATGTACTACGTAGTGCGTTGCATGTGTTGGTAG--------GGAGAGTGTGGTTCTGCACGGGTGTGC
GTTGGCTGGTAATTACGAGTACGTTGATGGAGCAAGGAAGGGAGGGGATGATGGGGAGCCTGTGCGGGAGGCGGCCGAGG
GCGGAGACGCGCCACCCGGTGTACCGCGGCGTGCGGTTCCGGGCGGGCAAGTGGGTGTCGGAGATCCGGGAGCTGCGCAA
GCAGAGCAGGATCTGGCTGGGCACCTACCCGACGCCCGAGATGGCCGCGGCGGCGTACGACGCGGCCGCATTGGCCCTGC
GTGGCGCGGGGACGGCGCTCAACTTCCCGGACGCGGCCAGGTCGCGCCCGGCGCCGGCGTCCATGTCCGCCGACGATGTC
CGCGCTGCGGCTGCCGCTGCCGCCGCGTCCGCGATGGGCAGCACCTGGGCTCCTCATCGGAGCGACCAATGCTGCGGTGA
TCAGCTGCGTGCA---GGCGAGTCGGACCGGCGTGACGACGTAATCGGCGTCGTGG------ACGAGGACGACGTGTTCG
AGATGCCGCGGCTGATGGTGAGCATGGCGGAGGGGTTGATGATCAACCCGCCGGTGCTGGGCACGGCGGCGGCGGACAGT
TGCTCGGCGGCGTCGTACTACGCCGAAATTGAGGATGAGGACGCCGTGAGCTTGTGGGATCACTCTTGATCC-------A
TCACGTAATGGAGATAGTGGAGGAGGGTGTGACTAAGACCGATACGGACGCGCGCCATGAGTGACCGTGAT---------
---GTGGTGATGTGGGATCGCCCGTGATGTGGACGGACGAATGTTTGTTGGCCAAACGTATA-TATGTACG---------
-----CTGTACGTAGCATGGATGTGAAATGGATGGTGGAGACACAACATGGATATAGGCA-----TACTAGTTATAGTGC
CATCTTCTTCTTCAAATCATTTATA-TTATAGTTTGTGGATTATTATTTAAAAAATCAAACATTTTGG------------
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>chr1A_52
---------------------------------------------------TTCCTTGTTCCCTACAAAACCAAAACCAT
GTTCAT--------------GCATGCGTCCATATAACGGCTGACATTCTTTCACCCCTACGCCACCGCGTCCGAACGACC
CCAAATCGCTACCACACACTGCGAAGCGCAAGCATGAACATGTCACGCGGCGAGAAAATATCTGACCGCCCACCGGCGCA
CGTCCCTACCCCGT----------------------------AATCTAGTACTGGATATGTTAGGTGGCAAGAGAACCAA
AGAATCATGCACCATCATCATCGCCTACTCATCATCGATCGGTTGGTTCCATCTCTCGCTTTCGCCTTTCCATAAAAGAT
AAAACCCCTATTATATTGTCCTTGAACGGGTCAACACAGGT---GTTGGAGCATCGGTGATGTGCTATCCGGCAGTCAAC
TCCGATGGCCACTCCGGCAGCCCGGCGTGTCGCCACCTGGATTTTGATTCGTAACAACCCGGTAATGATCCAGTGATGTC
GTACTAA-CACCGCCGCGCACTAACCCAGGAGCGGCTTTCTGAGCCTTAGATTGCCCC-CCCTATGTCTATGTGGCGGGG
CTCCATTGGGCGGCCCGTGATAGAGCCTGAAAGAGCCACTCCTTTTTGCCCCCTGTGCTTCACAGCTAATCCCTAGCTCG
GCATCGATCGAGCGAGCTCGCAAAGCTGAAAACCGCGTACGTTCTCACCAACTCCGGCCGGTTCCCGGCTTTTAAACCCT
CCTGAAACCCCCGTCCGGATTAGCGTATCTGCC----------------------ATCTGCTAATTGACATTGCTAATAT
TGTTAG---CTGGTTTGTTCACTGGCTTGCTTGCTTTGCTGCATTCCTCGTC-----CAGCCCGGTTGTGTGCATGCTGG
TTAGTGCAATG-------TACGTACTGCTCTGCATGTCTTGGTAG--------GGAGCCTGTTGTACCGGACGGGTGTGA
GTTGGCTGGTGATT---AGTACGTTAATGGAGCAAGGGAGGGAGGGGATGATGGGGAGCCTCTGCGGGAGGCGGCCGCGG
GCGGAGACGCGCCACCCGGTGTACCGCGGCGTGCGGTTCCGGGCGGGGAAGTGGGTGTCGGAGATCCGGGAGCTGCGCAA
GCACACCAGGATCTGGCTCGGCACCTACCCGACGCCCGAGATGGCCGCCGCGGCGTACGACGCGGCCGCATTGGCCCTGC
GTGGCGCGGGGACGGCGCTCAACTTCCCAGACGCGGCAAGGTCGCGCCCCGCGCCGGCGTCCATGTCCGCCGACGATGTC
CGGGCTGCGGCGGCCGCTGCCGCCGCGTCCGCGATGGCCAGCACCTGGGCTCCTCAGCGCAGCGACCAATGCTACGGCGA
TCAGCTGCATGCA---GGCGAGCAGGACAGGCGTGACGACGCGATCGGCGTCGTGG------ACGAGGACGACGTGTTCG
AGATGCCGCGGCTGATGGTGAGCATGGCGGAGGGGCTGATGATCAGCCCGCCGGTGCTGGGCACACCGGCGGCGGACGGT
TGCTCGGCGGCGTCGTACTACGCGGAAGCTGACGATGAGGACGCCGTGAGCTTGTGGGATCACTCTTGAATCTTGATCGA
TCACGTAATGGAGATAGTGGAGGAAGGTGTGACTAAGACCGATAGGGACGCGCGCCATGAGCCCATGCCATGACCTGGTG
GTGGTGGTGATGTGGGATCGCACGTGATGTGGACGGACGAATGTTTGTTGCCCAAACGTATA-TATGTACGCTCTGTAAT
GCGCCCTGTACGTAGCATGGATGTGAAACCGATGGTGGAGACACAACATGGATACATACA-----TACTCTA--------
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>SNPs
-------------S--------------------------S-S-------S-----------------------------
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----------S------------S-------------S--------------------S------------------S-S
-------------------S------------------------------------------------------------
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------------S--------------SSS-SSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-------------S------------------------------------------------------------------
-S------S------------------------------------SSSSSSSS---------S-----------------
-------S-------------------------------------S----------------------------------
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------------------------------------------------------------S-------------------
--------S--S-SSS---------S------------------------------SSSSSS------------------
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-----------------------------------------------------------S----------------SS--
--------------------------------------------------------------S----------S------
-----S-------------------------------------------SSSS---S-S-SSSSS---------------
---------------S---------S-------S-S-----------------------------S--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1011
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-------------------------------GCATGTCTTGGTAGCCTGGT-----------------------------
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>reverse_2541
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------------------------------------------------------------GCACTGTGTGATCTGTGGGA
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