>input_sequence_74413
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----------------------------CTAGCTGAAAAGAAAGAGAAGCATTACCAGTTTG-CACAAGAAACTACTCCG
TCGATCTCCATGGAAATCTACGGTGACCTCGAGGCCGGCTGCCTCAGCCATTCCGTCTCTCCCATCAAGCCGGCGTCCCC
GCCGAGGAAGGCCGGGCCCGGCCGCCTCTTCTGCGACCCCTGCGACGACTCCGACCAGCTCCTCGGCCACCACCACTACC
TGGACATCTGCTTCAGCTGCCGGAAGCTCCTCGCCGGGAACAAAGACATCTTCATGTACAGGTGAATACACGCTACCACT
GTCCTACCGGCCCTGATCTCTCCTTTTTGTGACCTCTGCCCAAGAATTGTCTCTGATGGTGGCTTGGTTTCTTTGTGTTG
CAGAGGTGACACGCCCTTCTGTAGCGAGGAGTGCAGGCAGGAGCAGATCGAGATCGACGAGGCGAGGGAGAAGCGGTCGA
GTCAGACGGGGAGGGCGGAGGAGCAGCGGCAGAGACAGCAGCAGAAGCAGAGCACCCCGAGGATCCCGGTCTGGGCGTGG
TAGCTGCTCTCCGGCGACCAAGCCG-AACGTAGGATTTTCAGCAGCAGTTGATGA---ACAAAAGCTCGATGATGAG---
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>chr2A_1_TraesCS2A01G454800
CCGTTGATTCAGCAACCTGATTAGCAAGCCAGCTTGCGGCTTTGCAACTTGGTCACTAGTG----TATGTGCCTAGGCCG
TCTTCTAGAGGAAGAAGGGTTTGTGCTAGTGGAC--------GTATGTGCTATGTGGGTCCAAAAGAA--AAAGTCTTTT
GCAGCTGGGGGGGATTTTCTCAAGGAAATAGTATCTTGCGTGCCACTTGTGTTCACCGGACGTGTAATTTGGCACATAGG
ATTATGTGTTATTGTGTGCCAATGGAAGCACAATTATTAAGGTTAACATGCAACGGTTAACGACGGGGTATAAAGACCAA
AATACCCTTGTTCGATGGTGCTTAGTCAATGATACTACATGGGTAGGTTAAGCACATGTGGGGAACATCTCAAACTTTGA
TTGTTGTCGTAACCGCATGATGCGAGAAACGTTCGATG------------------------GGCGAAGCCCAAAACTCA
GAACCATGTACTAGCATACATGACCGTTGTGCCGCTCGGAATAAGAACATTACAATCATCCGTGTTTTTAGACATTTAAA
CACCAGCATTTTTTACAATACTTACAGAAGGCATTTTAAAGTGTACTAAAATTATAAAACAGTGTACCTGACACCTATAC
AAACCAGTCTTGTAAAAACTAGTTTACAAAAGACATTTTCTTGAACATATAGAGAATCATTTTAAAAGTTTATAATGTTG
AAAATGTCTCATGACTAGCCAATCATACAAAAATAACA------------------------------------------
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------------------------------------------------------------------ACGCCATCCTTTTT
TTTTCTTCCGGGAAACGCAAACTTTTTTCT--AAGGGCTGGGAAACGCCAATTTCATTGTTTATCTCGCCCAACTACAAA
GTCTGAAAGTTTAGCAAACAAACATCCAAGAAATGGGAAATGCACCAGGAGAACCTTGCTCCACATCTTGCGTCCTAAAC
TTAATTTCATCCGCCACAGAGGGCCAAAGTGAAAAGGTATCCCACCCTCCCTGATATAAGGGGGTCTCTGGCTTCTCTAC
TCTCCTCCCCCTCTCCGTTCAGCCATTCCTAGCTGAAAAGAAAGAGAAGCATTACCAGTTTG-CACAAGAAACTACTCCG
TCGATCTCCATGGAAATCTACGGTGACCTCGAGGCCGGCTGCCTCAGCCATTCCGTCTCTCCCATCAAGCCGGCGTCCCC
GCCGAGGAAGGCCGGGCCCGGCCGCCTCTTCTGCGACCCCTGCGACGACTCCGACCAGCTCCTCGGCCACCACCACTACC
TGGACATCTGCTTCAGCTGCCGGAAGCTCCTCGCCGGGAACAAAGACATCTTCATGTACAGGTGAATACACGCTACCACT
GTCCTACCGGCCCTGATCTCTCCTTTTTGTGACCTCTGCCCAAGAATTGTCTCTGATGGTGGCTTGGTTTCTTTGTGTTG
CAGAGGTGACACGCCCTTCTGTAGCGAGGAGTGCAGGCAGGAGCAGATCGAGATCGACGAGGCGAGGGAGAAGCGGTCGA
GTCAGACGGGGAGGGCGGAGGAGCAGCGGCAGAGACAGCAGCAGAAGCAGAGCACCCCGAGGATCCCGGTCTGGGCGTGG
TAGCTGCTCTCCGGCGACCAAGCCG-AACGTAGGATTTTCAGCAGCAGTTGATGA---ACAAAAGCTCGATGATGAGTTG
GGCAGTCTAGATCCAGCTGAGGGAAGCTTGGGTCGCCGGTTCGACGGGACGACCACCGCCAGCAGCAGGCGGCAAACCTG
CTGCATC--TTATGCTGTCTCTGAACCGCAGGGATGGGTTCTCATCCTTTTGATCTCCGAAGATGGAGACTAAGAGTTAA
ATTTTGCGTGTGAATTATCGCTGGTTTTTTGTTCTTGTCTCGCGTAAGGTGTACCATAGCCTG----TCGATATGAAAAA
AA-GTGAGAGGCCTAACAAAA-----------------------------------------------------------
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-----GCTCTCTCAGTTTTCTCATCGGTTCTGCTGTGTTCTTTCCGATTG--------TTCCATGCTTCCACGGATGCTT
CCGCTCATAACAGTGGACGCAATATTAAGATTTAAAACTGAATTTTATCCGGTTTGGCCCACGAACACAATCGCCGTTCT
GTACTGC-----AGGAATTTAAGGCCGTTCCTGTTTTTTGGACAAAAAAAATGAAAAATACGGGAGGCCGTTGCCCGCTA
CTGTGTGCATAGAGCGGAGGCAGAGGACCAGCCAACGGCCCTGTTGGCTCTTGGTGGAGCAGGGCGCAGGTAAACTCTGG
AAAGTTCAGAGAGAAAACAAATGATGCCTTCCAATTCTTACTGAATAAATGATGGCCGTGAACGAACGAATTGTTATTAA
---TTAGACGTTTGCTTCAGCAAGAAAA---GCAAAGAAGCAGTGTGCTCAACATGAGC------AATAAAGTTCCACAC
ATACCTTACGCCGTGAGTGAATGAAGTAATAAAGAAAATAAAGATCTTCTCTTTCGGCCACACAGCCGGGGGTTTCATTC
GCGAGGCCTGTTTCTTGGAAACTTACACGAGGCAACGGCTAGCAAC---------AAGGACTGGCGCGTTTTACCTCACC
ATTTTTCTGTCCACGAAAGCTGCCTGGCCAGTGGATCTC---CGGTGTACACCTTACGCCGTGCAAGGCCCACCTGTCAG
CTGCCGTCGTAATAATACATAAGAAAACAAAGACTCGTA--------CGTGTAACATGTACAAATACGGTTAT
>chr2D_1
CCGTTCGTTCAGCAACCTGATTAGCAAGCCAGCTTGCGGCTTTGCAACTTGGTCACTACTG----TATGTGCCTAGGCCG
TCTTCTAGAGGAAG---GGTTTGTGCTAGTGGCGCGGTGGTAGTATGTGCTATGTGGGTCCAAAAGAAAAAAAGTCTTTT
GCAGCTGGGGGGGATTTTCTCAAGGAAATAATATCTTGCATGCCACTTGTGTTCACCAGATGTGTGATTTGGC-CCTAGG
ATTATGTGTTATTGTGTGCCAATGGAAGCACAATTATTATGGTTAACATGCAACGGTTAACGATGGGAG--AAAGACCAA
AATACCCTTGTTCGATGGTGCTTAGTCAATGATACTACATGGGTAGGTTAAGCACATGTGGGGAACATCTCGAACTTTGA
TTGCTGCCGTGAACGAATGACGCGAGTAAATTTCTTTTTATTCGCAAAAAAAAAAAATTGATGGCGAAGCGCAAAACTCA
TAACCATGTACTTTCG-ACATTACCGTTGTGCCACTCGAAATAGGAACATTACAATCATCCATGTTTTCAGAAATTCAAA
CACCAGCACTTTCGACAATATTTAGAGAAGGCACTTT-AATTGTAATAAAACTATGAAACAATGCACCTGACACCTATAC
AGACCAGTCTTGTAAAAACTAGTT-------GACATTTTCTTGAACATGTTGCGAACCATTTTTATTGTT-ACAATGCTG
AAAATGTCCCCTGACTAGCCAATCATACAAAAATAACA------------------------------------------
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------------------------------------------------------------------ACGCCGTCCCATTT
TTTT--TCTGAGAAACGCCAAAAAAAAATTTGAAGGGCTGGGAAACGCCAACTTTATTGTTTATCTCGCCCAAGTACAAA
GTCTGAAAGTTTAGCAAATAAACATCCAAGAAATGGGAAATACACCGGTAGAGCCTCACTCCACATCTTGAGTGCTAAAC
ATAATTGTACCCGCCACAGAGGGCCAAAATGAAAA-GTACGTCACCCTCCCTGATATAAGGGGGTCTCTCGCTTCTCTAC
GCTCCTCCCCCACTCCGTTCAGTCATTCCTAGCTGAAAAGAAAGAGAAGCACTACCATTTCTACAGAAGAAACTACTCCA
TCGATCTCCATGGAAATCTACGGTGACCTCGAGGCCGGCTGCCTCAGCCACTCCGTCTCTCCCATCAAGCCGGCGTCCCC
GCCGAGGAAGGCCGGGCCGGGCCGCCTCTTCTGCGACCCCTGCGACGACGCCGGCGAGCTCCTCGGCCACCACCACTACC
TGGACATCTGCTTCAGCTGCCGGAAGCTCCTCGCCGGGAACAAAGACATCTTCATGTACAGGTGAATACGCGCTACTACC
--CCAACAGGCTCTGATCTCTCCTTTTTGTCACCTCTGCCCAAGAATTGTCTCTGATGGTGGCTTGATTATTTTGTGTTG
CAGAGGTGACACGCCCTTCTGTAGCGAGGAGTGCAGGCAGGAGCAGATCGAGATCGACGAGGCGAGGGAGAAGCGGTCGA
ATCAGACCGGGAGGGCGGAGGAGCAGCGGCAGAGGCAGCAGCAGAAGCAGAGCACCCCGAGGATCCCCGTCTGGGCGTGG
TAGCAGCTTTCCGGCAACCAATCCG-AACGTAGGATTTTCAGCAGCAGTTCGTGA---ACAAAAGCTCGATGATGGGTTG
GGAAGCCTAGATCCAGTTGAGGGAAGCTTGGATCGCCGGTTCGACGGGACGACCACCA-CCT--GCAGGCAGCAAACCTG
CTGCATCTTTTATGCTGTCTCTGAACCGCAGGGATGGGTTCTCACCCTTTTGATCTCCGAAGATGGAGACTAAGAGTTAA
ATTTTGTGTGTGAATTATCGCTGGTTTTTTGTTCTTGTGTCGCGTAAGGTGTACCATAGCCTGCCTGTCGATATGAAAGA
AA-GTGAGAGGCATAACAAAA-----------------------------------------------------------
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-----GCTCTCTCAGTTTTCAAATCAGTTCTGCTGTGTTCTTGCCTGTTG--------TTCCATGCTTCCACGGATGCTT
CCGCTCATAACAGTGGACACAATATTAAGATTTAAAACTGAATTT-ATTCGTTTTGCCCCACGAACGCCATCGCCGTTCT
CTACCGTACCATAGGAATTTAAGGCCGTTCCTGTTTAAAA---AATAATAATCAAAACTACGGGAGGCCGTTGCCTGCTA
CTGTGTGCATAGAGCAGAGGCAGAGGACCAACCAACGGCCCTGTTGGTTCTTGGTGGAGCAGAGCGCGGGTAAACTCTGG
AAAGTCCAGAGAGAAAACAAGTGGTGCCTTCCGTTTCTTACTGAAGAAATGATAGCCGTGAACGA-------GTTGTTAA
---TTAGACGTTTGCTTCAACAAGAAAAAAAGCAAAGAAGCAATGTGCTCAACATGAGC------AATAAAGTTCCACAC
ATACA--------TGAGTGAATGAAGTAATAAAGAAAATAAAGATCTTCTCTTTCGGCCACACATCGGGTGGTTTCATTC
GCGAGGCCTGTTTCTCGGAAACTTACATGAGGCAACGGCTAGCAACAAAAAAAAAAAGGACTGGCGCATTTTACTTCACC
ATTTTTCTCCCCACGAAAGCTGCCTGGCTAGTGGATCTCGGCCGGAGTACACCTTA---CGTGCAAGGCCCACCCGTCAG
CTGCCGTCGTATTATTAAGAAAAAACA-AAAGGCTCGTA--------CGTGTAACATGTACCAATACGGTT--
>chr2B_1
CCGTTCGTTCAGCAACCTGATTAGCAAGCCAGCTTGCGGCTTTGCAACTTGGTCACTGGTACTACTATGTGCCTAGGCCG
TCTTCTAGAGGAAG---GGTTTGTGCTAGTGGCCC---GGTGGTATGTGCTACGTGGGTCCGAAAGAAAAA--GTCTTTT
GCAACGGTGAGAGATTTTATCAAGGAAATAATATCTTGCTTGCCACTTGTGTTCACCAGATGTGTAATTTGGCACCTAGG
ATTATGTGTTATTGTGTCCCAATGGAAGCACAATTATTAAGCTTAACATGCAACGGTTATCGACGGGAG--AATGACCAA
ATTACCCTTGTTCGATGGGGCTTAGTCAATGACAGATGGGT---------AGGACATGTGAAGAACATCTCAAACTTTGA
ATGTTGTCGTAGCCGAATGACGCAAG-------------------------AAATATTTGATGGTGAAGCGCAAAACTTG
GAACCATGTA---GCATACATGGCCATTGTGCCGCTCAGAATAGGAACATTACAATCATCTATGTTTTCAGACGTTAAAA
CACTAGCATTTTCGACAATATTTAGAGAAGGCATTTTAAAGTGTTATAGAACTATAAAACAATGTACCTGACACCTGTAC
AGACCAGTCTTGTAAAAACTAGTT-------GACATTTTCTTGAACATGTTGAGAATCATTTTCATAGTTTACGATGTTA
AAAATGTCTTATGGCTAGCCAATCATACAAAAATAACAGCCGACGCCTCCTCCTTCCTCCACAAAAAAGTTAGGGTTTCT
GCCTCCCGCTGTCGCCGCCGCAGGTCTGCCTCCTCTCCGGTGGCCCTAGGGCCATGGGGCGTGGTGGATCTCTGCAAGGG
CCGGCGGGAGGGCTTCGTTTTTAGTCGTTTCTTCTAGTTTTGCTAGGGTTTGTGTTCTTCTCAGGAAGACGAGACGGCGC
CGGCTCCCGGAAGATGGAATAAAGGTCTCCTCGCCTAGTCCCCGTTCCGGCGGCGCGCCTAGCATCGTTGGTGGGCGTGT
GGAGGTGTGTCTCCGGCGGATCTATCTTTGATGGATTTGCTCGGATCTCGTCGTTGTTCGTCTACGTTCGCGTGTCTTCA
GATTGGATCTTTCTGATCTACGTTATTCTTCATCTGCTGCGGTTGCTGTTCTGGTGCGCTGGTCCTACGGGGCCTTAGCA
CGACGACTTCCCGACTGTCTACTACAACAAGTTGTGCCCGACTCCGGCGATGGAGGGGCGATGACGCCGGCGCGCCTTCG
GCTCGCTTCAGTGCTGGTAGTCGTCGCTAGGTGGTCTATGATCTGGATATAATTTTTATTATTTCTGGTATTCGTTGTAC
TGCCATGATTGAAGATGAATAGATCGAAAATTTTCTCGCAAAAAAAAAAATCATACAAAAATAACAACGCCATCCTTTTT
T---CTTCTGGGAAATGCCAACTTTTTTTTCGAAGGGCTGGGAAATGCCAACTTTATTGTTTATGTCGCCCAAGTACAAA
GTCTGAAAGTTTAGCAAATAAACAACCAAGAAATGGGAAATCCACCGGGAGAACCTTGCTCCACATCTTGAGTGCTAAAC
TTAATTTCATCCGCCACAGAGGGCCAAAATGAAAA-GTACGCCACCCTCCCTAATATAAAGGGGTCCCTCGCCTCTCTAC
TCTCCTCCCCCACTCCCTTCAGTCATTCCTACCTGAAAAGAAAGAGAAGCATTAGCAGTTTG-CAGAAGAAACTACTCCA
TCGATCTCCATGGAAATCTACGGTGACCTCGAGGCCGGCTGCCTCAGCCACTCCGTCTCTCCCATCAAACCGACGTCCCC
GCCGAGGAAGGCCGTGCCCGGCCGCCTCTTCTGCGACCCCTGCGACGACGCCGGCGAGCTCCTCGGCCACCACCACTACC
TGGACATCTGCTTCAACTGCCGGAAGCTTCTCGCAGGAAACAAAGACATCTTCATGTACAGGTGAATACACGCTACT--T
GTCATACCGGCCATGATCTCTCCTTTTTGTCACCTCTGCTGAAGAATTGTCTCTGATGGTGGCTTGATTATTTTGTGTTG
CAGAGGTGACACGCCCTTCTGTAGCGAGGAGTGCAGGCAGGAGCAGATCGAGATCGACGAGGCGAGAGAGAAGCGCTCGA
ATCAGACCGGGAGGGCGGAGGAGCAGCGGCAGAGACAGCAGCAGAAGCAGAGCACCCCGAGGATCCCGGTCTGGGCGTGG
TAGCAGCTTTCCGGCAACAAAGCCGAAACGTAGGATTTTCAGCAGCAGTTCATGATGAACAAAAGCTCGATGATGAGTTG
GGCAGGCTAGATCCAGTTGAGGGAAGCTTGGATCGCCGGTTCGACGGGACGACCACCACCCT--CCAGGCTGCAAACCTG
CTGCATC--TTATGCTGTCTCTGAACCGCATGGATGGGTTCTCATCCTTTTGATCTCCGAAGATGGAGACTAAGAGTTAA
ATTTTGTGTGTGAATTATCGCTGGTTTTTTGTTCTTGTGTCGCGTAAGGTTGTACTATA---GCCTGTCGATATGAAAGA
AAAGAGAGAGGCATAACAAAAAAGGGGATCCGGCTTGGCTGCTCCCTTCCTATGCTCCCATCCGTGCTCCCACTTCATCC
TACAGCTGTCTTTTTCCTTTTCTTTTTCTAATCTAATTATCTCCCTCTCTTGATTTTAAGGGGGTGGGGTCGGGCTTTAT
TTTGTTCCAATCAAAACAAGCCACGTACGCGGGAGCACGGATGAGCACACGGCGGGGGAGCTGTCAAGTCTCGTCCAACA
AAAGGGCTCTCTCGGTTTTCTCGTTAGTTCAGCTGTGTTCTTTCCTACTGTTCCATGCTTTCATGCTTCCACAGATGGTT
CCACCCATAACAGTGGACGCAATATTAAGATTTAAAACTGAATTT-ATTCGTTTTGGCCCACGAACACAATCGCCGTTCT
TTACTGTACCATAGGAATTTAAAGCCGTTCCTGTTTAAAA---AA----AATGAAAAATACTGGAGGCCGTTGCCTGTTA
CTGTGTGCATACAGCAAAGGCAGAGGACCAGACAACGGCCCTGTTGGTTCTTGGTGGAGCAGAGCGCAGGTAAAGTCAGG
AAAGTCCAGAGAGATAACAAATGATGCCTTCCATTTCTTACTGAAGAAATGATAGCCGTGAACGA-------ATTGTTAT
TATTTAGACGTTTGCTTCAACAAGAAAA---GCA---AAGTAGTGTGCTCAACATGACTACTCCTAATAAGGTTCCACAC
ATACA--------TGAGTGAAGT-------------AATAAAGATCTTCTCTTTCGGCCAGACAGCCGGTGGTTTCATTC
GCGAGGCCTGTTTCTTGGAAACTTACACGAGGCAACGGCTAGCAACAA---------GGACCAGCGCATTTTACTTCACC
ATTTTTCTGTCCACGAAAGCTGCCTTGCTAGTGGATCTC---CGGTGTACACCTTA---CGTGCAAGGTCCACCTGTCAG
CTGCCGGAGTATAT-----TAAGAAAACAAAAGGCTCGTACGTCTATCGTCTAACATGTACAAATACGGTTAT
>SNPs
-----SS-------------------------------------------------------------------------
--------------SSS---------------S-----------------------------------------------
------------------------------S--------S-----------------S--S--------------S----
-------------------------------------------------------------------SSSS---------
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---------------S----S-----S--SS---SS-S--------------------------------S---------
------------S------------------------------S-----------------S------S-------S---
------------SS------S---S--------------------S-----S---------S------------------
-S----------------------SSSSSSS-----------------S-S------------S-S------S-------
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--------S---------S---------S----------------------S--S------------------S------
------------------S----------------------S----S-----------------------S--S------
----------------------------S------S---SS----------------------------S----------
-----------S----------S------------------------------------------S-------------S
--------------------------------------------------S-----------------------------
-------------------------------------------------S---S-S------------------------
----------------------------------------------------------------------------S---
------------------------------S-----------------------------------S--SS---------
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S------S------------------------------------------------------------------------
----S---S------S----------------------------------S-----------------------------
-----S----------S--------------S-------------------------S--SSSS------S---------
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------S-------------------------------S---------------------------------------S-
------------S-------------------------------------------------------------------
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-------------------------S-------------------S----------------------------------
---------------------------------------------S--S--S----------------------------
S-----S-----------------------------SSSSSSS--S--S--------------------------S----
---------------S-------------------------------S--------------S-----------------
-----S---------------------------S-----------S-------S-----------SSSSSSS---S----
-------------------S------------------------------------------------------------
----SSSSSSSSS--------------------------------------------------------S----------
-------------------------------------------------------------------S------S-----
----------------------------S---------------------------SSS---------------------
-----------S--S--SS-------------S----------------------------------------
>forward_1495
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-----------------------------------GGCTGGGAAACGCCAATTTC-------------------------
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>reverse_3288
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-------ACGCCGTGAGTGAATGAAGT-----------------------------------------------------
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