>input_sequence_74396
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--------------------ATGGAATTGCAGAAGGATCAGAGCCATCCGCTTTTGTCCAACAGAACTGATGGCACTGAC
AACATGAGCCCCGTGCAGAAAGCAATCAGACAGGCATACCAGAGCACCGGGCACCTCGCCAAACTCCTTCCATCAGGCAC
CGTGCTTGCCTTCCAGCTGCTGGCTCCAACCATGGCTAAACAAGGCCACTGTGGTGACTTGGATCGGATGATGACGGGAG
GGCTTGTGGTGCTCTGTGCACTCTCGTTCTTTGTTGTTACCTTCACAGATAGCTTCAGGGATGAGAACGGAAAGGTACGA
CACGGGTTTGCCACGTTCAAGGGATTGTGGC-CATTGATGGTGGAGTTACTCTTGATCCACACGCTGCGGTTGAATATAA
GATAACATTTCTAGACTTTTTCCATGCAACTGTCTCAGCAGTGATTTTTGTTGCAATCGCCCTATTTGACCAGAATGTGG
CATCTTGCTTTTATCCAATACCATCAGAGGACACAAAGCAAGTTCTCACAACATTGCCAGTTGCTATTGGAGTTATTGGA
AGCATGCTGTTTGTTAGCTTCCCAACCACCCACCATGGCATT-GGCTTCCCAGTCTCTCCACAGTAG-------------
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>chr3B_1_TraesCS3B01G273700
AACACGCATGTCCTCTACATAATTAAGATGCACACAGCCAACACCAACACACACAAAAAGATCATGTCGGCAAAGAGCAA
AGCCATATAAGACCGAAGCTATGCAAGGGG-AGCATATATTTAGGATTAATGCTTGGGAAGAGCCTCTTGCCTGCCATGA
GGGGAAATGT---AAGTG--AAAACTATTGCCCACTCAGCAACTCTAGCAGGTCCACAAAAGCACATGAACTCCATAATA
ACGCCAATATCGATGCTACGGGGTAG--AAAGAACATTCTAGCAGATTCTCACTATACAGGGTGCTCGAGTCCCGGCATG
GG----TTTTTTCTTCCAGAGAAAAAGGAAAAGGGAATCCCAGTGACAAGTGGGTCCCATGACATGACAGAATTTTAGAA
GCTACCCCCTCGGTAAAGAAATACTCCCTCTGTCCATAATATAAGTGCGTTTTTATTAATGTAGTGTAAAAAACGCTCTT
ATACTATGGGAGGGAGGGAGTACTTTACAATATCTAAATTTGCACGACTGCTTTTGAGCCTCCAAAAGATTTCGGAGTGC
ACTCCAATCCGTTTT--AGAGGCTGCTTTTTTT-TAGAATCTGCTAGAGTTGCTTGCTCTTAGGCACACCTCTG------
-----------GTTAGTAACAGCATGCACTTGCGTAATCACCACAAGGCATAACGGACGAAAAATTAGACCCAGAATA-A
CTATGGTTCCTTC-TGTTACCTAAACTTGCTTTTACAACAGCTAGAACACAACAGAGAAACAGCAGCACCACCAA-----
------------------CCCCCATGTTTTTCTCGCCAGAAACTGCAACCCAGGATCCCAGCTTGCCTTCAGTTTTTGCT
TCTTTTTCTTGCAAG-CAATCCAAAATGGGCGGCAAATAGAAGCCGGTCACCGGCTTCATTCC-TTCAAATCCCTACTAC
AGGCCCCATCTTCTCTTTCCTCATACTACATCCTCAAAGACCTGTTA-AAGGAAGCAAACAAAGAGGGCACGAGCAGCAA
TGACTGCTACACAGCCGGACATGGAATTGCAGAAGGATCAGAGCCATCCGCTTTTGTCCAACAGAACTGATGGCACTGAC
AACATGAGCCCCGTGCAGAAAGCAATCAGACAGGCATACCAGAGCACCGGGCACCTCGCCAAACTCCTTCCATCAGGCAC
CGTGCTTGCCTTCCAGCTGCTGGCTCCAACCATGGCTAAACAAGGCCACTGTGGTGACTTGGATCGGATGATGACGGGAG
GGCTTGTGGTGCTCTGTGCACTCTCGTTCTTTGTTGTTACCTTCACAGATAGCTTCAGGGATGAGAACGGAAAGGTACGA
CACGGGTTTGCCACGTTCAAGGGATTGTGGC-CATTGATGGTGGAGTTACTCTTGATCCACACGCTGCGGTTGAATATAA
GATAACATTTCTAGACTTTTTCCATGCAACTGTCTCAGCAGTGATTTTTGTTGCAATCGCCCTATTTGACCAGAATGTGG
CATCTTGCTTTTATCCAATACCATCAGAGGACACAAAGCAAGTTCTCACAACATTGCCAGTTGCTATTGGAGTTATTGGA
AGCATGCTGTTTGTTAGCTTCCCAACCACCCACCATGGCATT-GGCTTCCCAGTCTCTCCACAGTAGCTGGGTCTTCAAA
AGATTTGGTTGCTCTAATTCCTGTTGATCAAACACAGAGTCGAAAACCCCTTAAGTGGGATAGAGAGAAATATACAGCAC
CTATTTC-CTAAAATAATATTTATAAGAGTACCTATGGTGGCCTTCGACATGAACATGTTTTGTGTATTCAGAAATGAAC
AGTGCTGGCAACTGGCAGGATAATATATTGGATACATCTTTGGCACATACCACAATTTTTTAAATCTTTCATATGATACA
ACTAAGACTTTTGGTTGAATGGTTAAAGCGCCCAACTCATAATTGGTAAATTTGAGGGTTCAATTCCTACTGGATGCACG
TGAACAGGAACGTTCCATAAGTCTACTGGAATTGGCTCTCTATCCACGGAACCTCATCCATCATGTATATTTATACCATA
ACATAGGAACAATATGAACTCGTATTCTTATTGATACTCGAACTCAGAGCATAGGAGGGAAAGTCGATACATGGATGGAA
TCAAATACGCGGCAGGCATGGAAAAAAGTCTTCATTAATTGGGAAAGAAGCAATATACCAGGAGTCGATAGCTTGTTTTT
GTCTTGAATCTTCATACATATATGTAGTTAAGTTTTGTATTGTAATTTGCTAGTTTTTCCAAAATTAACATGTCTAGGAA
AGGAGACTTTAAAAATCATATCAGACAGTGTATTCTTGAAGTCATACCACGCAGCTTTTAAGTCGTCATGCAATAACCCT
GAACAAACATTTTGGTCGACGAAATAAGGAAACAGAAGACACATGACAAGAATAGAAATGAACTTCAGCAGAGCGCGTGT
ATGTATCTCTATACATACAAAAACAAGAGATATGGAAGACAACCCCACATCGTACCTGAACACTGCCCGCATGCTTGTCA
CTTCAAAAATTATTCATACAATAAATATTAGTACTTCGCATATCCTGGACATGGAAGCACTGGAGTTTAAGGGGTTTGGT
AGCAA-AA-CTCTCTCACTTGTGCAACCCC
>chr3D_2
-ACACACCTATCCTCTGCATAATTAGGATGAACACAGCTAACACCAACACACACAAAAAGATCATGTCG--ACAGAGCAA
AGCCATATAAGGCCAAAATTATGCAAGGGAAAGCATATATTTAGGATTAATGCTTGCGAAGAGCCTCGTGCCTTCCATCA
GAGGAAATGT---AAGTATAAAAACTATTGCCCACTCAGCAACTCTAGGAGGTCCCCAAAAGCACATGAACTCTATAATA
GCGCCAATTTAGATGCTACGGGGTAAAA----AACATTCTAGCAGATTCTCTCTATACAGGGTGCTCGAGTCCGGGCATG
TTTTTTTTTTCTTTTGCAGAGAAAAAGGAAAAGGGAGTCCCAATGACAAGTGGGTCCCATGATATGACAGAATTTTAGGA
GCTACTCCTACA----------AT--------------------------------------------------------
-----------------------TTTACAATATCTAAGTTTGCGCGACTGCTTTTGAGCCTCCAAATGATTTCGGAGTGC
ACTCCAAACCGTTTTTTAGAGGCTGCCTCTTTT-TAGAATCTGTTAGAGTTGCTTGCTCTTAGGCACA---CTG------
-----------GTTAGTAACAGCATGCACTTGCGTAATCACCACAAAACATAACGGACAAAAAATTAGACACAAAATAAA
CTATGGTTCCTTC-TGTTACCCAAACGTGCTTTTACAACAGCTAGAACG----------------------CAACAGAGA
AACTGCAGCACCACCAACCCCCCATGTTTTTCTCGCCAGAAACTGCAACCCAGGATCCGAGCTTGTCTTCAG-TTTTGCT
TCTCTTTCTTGCAAGGCAATCCAAAATGGGCGGCAAATAGAAGCCGATCACCAGCTTCATTCCCTTCAAATCCCTGCTAC
---------------------------ACATCCTCAAAGACCTGTTAGAAGGAAGCAAACAAAGAGGACACCGGCAACAA
TGACTGCTACACAGCCTGACATGGAATTGCAGAAGGATCAGAGGCATCCTCTTTTGTCCAACAGAACTGATGGCACCAAC
AACATGAGCCCCACGCAGAAAGCAATCGGACAGGCATACCAGAGCACCGGGCACCTCGCCAAACTCCTTCCATCAGGCAC
CGTGCTTGCCTTCCAGCTGCTGGCTCCAACCATGGCTAAGCACGGCCACTGTGGTGACTTGGATCGAATGATGACGGGAG
GGCTCGTGGTGCTCTGTGCACTCTCATGCTTTGTTCTTAGCTTCACAGATAGCTTCAGGGATGAGAACGGAAAGGTACGA
TACGGGTTTGCCACGTTCAAGGGATTGTGGGTCATCGATGGTGGAGTTACTCTTGATCCACACGCTGCAGTTGAATATAA
GATACAATTTCTAGACTTTTTCCATGCAACTGTCTCAGCAACGATCTTTGTTGCAATCGCCCTGTTTGACCAGAATGTGG
CATCTTGCTTTTATCCAATACCATCAGAGGACACAAAGCAAGTTCTCACAACAGTGCCAGTTGCTATTGGAGTTATTGGA
AGCATGCTGTTCGTTAGCTTCCCAACCACCCGCCATGGCATT-G-CTTCCCAGTCACTCCACAATAGTTGGGTCTTCAAA
AGATTTGTTCGCTCTAGTTCCTGTTGATCAAACACAGATTCAAAAGCCCCTTAAGCGGGATAGAGAGAAATATACAGCAC
CTATTTCTCTAAAATAATATTTATAAGAGTACCTATGGTGGTCTTCGACATGAACATGTTTTGTGTATTCAGAAATGAAC
AGTGCTGGCACCTGGCAGGACAATATATTGGATACGTCTTTGGCACATACCACAATTTTTTAAATCTTTCATATG-TACA
ACTAAGACTTTTGGTTGAATGGTTAAAGCGCCCAACTCATAATTGGTAAATTTGAGGGTTCAATTCCTACTGGATGCACG
TGAACAGGACCGTTCCATAAGTCTACTGGAATTGGTTCTCTATCCACAGAATCTCATCTATCATGTATATTCATACCATA
ACATAGGAACAATA------------------------------------------------------------------
-------CGTGGCAGGCACGGAAAAAAGTCTTCATTAATTGGGAAAGAAGCAATATACCAGGAGTCGATAGCTTGTTTTA
TTCTTGAATCTTCATACATATATGTAGTTAAGTTTTCTATTGTAATTTGCTAGTTTTTCCAAAATTAACATGTCTAGAAA
AGAAGACTTTAAAAATCATATCAGACAGTGCATTCTTGAAGTCATACCACGCAGCTTTTAAGTCGTCGTGCAATAACCCT
GAACAAACATTTTGGTCAACGAAATAAGGAAACAGAAGACACATGACAAGAATAGAAACGAACTTCAGCAGAGCGCGTGT
ATGTATCTCTATACATACAAAAACAAGAGATATGGAAGACAACCCCACATCGTACCTGAACACTGCCCGCATGCTTGTCA
CTTCAAAAATTATTCATACAATAAATATTAGTACTTCGCATATCCTGGACATGGAAGCACTGGAGTTTAAGGGTTTTGGT
AGCAACAA-CTCTCTCACTTGTGTAACCCC
>chr3A_14
-------------TCTGCATAATTAAAATGCACATAGCTGACACCA--ACACACAAAAAGATCATGTCGGTAAAGAGCAA
AGCCGTGTAAGACCGAAGCTATGCAAGGGGAAGCATATATTTTGGATTAATGCTTGGGAAGAGCCTCTTGCCTGCCATCG
GAGGAAATGTTGTAAGTATAAAAACTATTGCCCACTCAGCAACTCTAGCAGGTCC-CAAAAACACATGAACTCCATA---
---------TAGATTCTACGGGGTAAAAAAAGAACATTCTAGCAGATTCTCTCTATACAGGGTGCTCGAGTCCGGGCATG
GG----TTTTTTCTTGCAGAGAAAAAGGAAAAGAGAGTCCCAACGACGAGTGGGTCCCATGATATGGCAGAATTTTAGAA
GCTACCCCCTCGGTAAAGAAGTAT--------------------------------------------------------
-----------------------TTTACAGTATCTAAATTTGCACGACTGCTTTTGAGCCTCCAAATGATTTCGGTGTGC
ACTCCAACCCGTTTC--AGAGGCTGCCTTTTCTCTAGAATCTGCTAGAGTTGCTTGCTCTTAGGCACA---CCTCTGGTT
AGTAACAGGCTGTTACTAACAGCATGCACTTGCGTAATAACCACAAGGCATAACGGACAAAAAATTAGACCCAGAATA-A
CTATGGTTCCTTCTTGTTACCTAAACGTGCTTTTACAACAGCTAGAACG----------------------CCAA-----
------------------CCCCCATGTTTTTCTCGCCAGAAACTGCAACCCAGAATCCCAGCTTGCCTTCAGTTTTTGCT
TCTTTTTCTTGCAAGGCAATCCAAAACAGGCGGCAAATAGAAGCCGGTCACCGGCTTCATTCCCTTCAAATCCCTACTAC
AGGCCC-ATCTTCTCTTTCCTGATACTACATCCTCAAAGACGTGTTAAAAGGAAGCAAACAAAGAGGG------------
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>chr3A_963
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--------------------------------------------------------------AGAGGGCACCAGCAGCAA
TGACTGCTACACAGCCGGACATGGAATTGCAGAAGGATCAGAGGCATCCTCTTTTGTCCAACAGAACTGATGGCACTGAC
AACATGAGCCCCGTGCAGAAAGCAATCAGACAGGCATACCAGAGCACCGGGCACCTCGCCAAACTCCTTCCATCAGGCAC
CGTGCTTGCCTTCCAGCTGCTGGCTCCAACCATGGCTAAACAAGGCCACTGTGGTGACTTGGATCGGATGATGATGGGAG
GGCTTGTGGTGCTCTGTGCACTCTCGTGCTTTGTTGTTACCTTCACAGATAGCTTCAGGGATGAGAACGGAAAGGTACAA
TACGGGTTTGCCACGTTCAAGGGATTGTGGGTCATTGATGGTGGAGTTACTCTTGATCCACACGCTGCGGTTGAATATAA
GATGACATTTCTAGACTTTTTCCATGCAGCTGTCTCAGCAGTGATTTTTGTTGCAATCGCCCTATTTGACCAGAATGTGG
CATCTTGCTTTTATCCAATACCATCAGAGGACACAAAGCAAGTTCTCACAACATTGCCAGTTGCTATTGGAGTTATTGGA
AGCATGCTGTTTGTTAGCTTCCCAACCACCCGCCATGGCTTTGG-CTTCCCAGTCTCTCCACAGTACCTGGGTCTTCAAA
AGATTTGTTTGCTCTAATTCCTGTTGATCAAACACAGAGTCGAAAACCCCTTAAGCGGGATAGAGAGAAATATACAGCAC
-TATTTCTCTAAAATAATATTTATAAGAGTACCTATGGTGGCCTTCGACATGAACATGTTTTGTGTATTCATAAATGAAC
AGTGCTGGCACCTGGGAGGACAATATATTGGATACGTCTTTGGCACATACCACAATTTTTTAAATCTTTCATATGATACA
ACTAAGACTTCTGGTTGAATGGTTAAAGCGCCGAACTCATAATTGGTAAATTTGAGGGTTCAATTCCTACTGGATGCACG
TGAACAGGAACGTTCCATAAGTCTACTGGAATTGGCTCTCTATCCACGGAATCTCATCCATCATGTATATTCATACCATA
ACATAGGAACAATATGAACTCGAATTCTTATTGATACTCGAACTCAGAGCATAGGAGGGAAAGTCGATACATGGATGGAA
TCAAACACTAGGCAGGCACGGAAAAAAGTCTTCATTAATTGTGAAAGAAGCAATATACCAGGAGTTGATAGCTTGTTTTT
GCCTTGAATCTTCATACATATATGTAGTTAAGTTTTGTATTGTAATTTGCTAGTTTTTCCAAAATTAACATGTCTAGAAA
AGAAGACTTTAAAAATCATATCAGAC--TGCATTCTTGAAGTCATACCACACAGCTTTTAAGTCGTCGTGCAATAA-CCT
GAACAAACATTTTGGTCAACGAAATAAGGAAACAGAAGACACATGACAAGAATAGAAATGAACTTCAGCAGAGCGCGTGT
ATGTATCTTTATACATACAAAAACAAGAGATATGGAAGACAACCCCACATCGTACCTGAACAGTGCCCGCATGCTTGTCA
CTTCAAAAATTATTCATACAATAAATATTAGTACTTCGCATATCCTGGACATGGAAGCACTGGAGTTTAAGGGTTTTGGT
GGCAGAACTCTCTCTCACTTGTGCAACC--
>SNPs
S----S-S-S------S---------------------S-------------------------------S---------
------------------------------------------------------------------------------S-
-S---------------S-------------------------------------S------------------------
S-------S-S--------------S-------------------------S---------------------S------
---------------S--------------------S-----S-------------------S-----------------
--------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S-------------
-------S------------------S-----------------------------------------SSS---------
----------------------------------------------------------S---------------------
--------------------------S---------------------SSSSSSSSSSSSSSSSSSSSSSS---------
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------S--------------S-------------------------------------------------S--------
-------------------------------------------S-----S------------------------------
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---------------------------S----------------------------------------------------
S-----------------------------S-------------------------------------------------
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-------------------------------S------------S-----------------------------------
-------S-----------------------------------------------S------------------------
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----------S---------S--------------S--------------------------------------------
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---------------------------------------------------S-------------------S--------
----------------------S---------------------------------------------------------
-----S---S--------S-------------------------------------------------------------
-----------------------------------------------------------------------------S--
--S---------------------------S------------------------------------S------------
-----------------S--------------------------------------------------------------
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-------------------------------------------------------------------------S------
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>forward_791
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---------------------------------------------------ACAGAGAAACAGCAGCACCA---------
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>reverse_1645
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--------------------------------------------GCTTCCCAGTCTCTCCACAG----------------
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>forward_1632
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------------GTTAGCTTCCCAACCACCCA------------------------------------------------
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>reverse_2634
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-------------------------------------------------------------------------GTTTGGT
AGCAAAACTCTCTCACT-------------
