>input_sequence_74393
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-------------------------------------------CCAACACGAGAGGGGCCGAGGAAAACAGAAACCACGG
TCGAGCTGAGGCTACTGTACTGCCTCTGCCTGCACCAACC----------------------------------------
AAGAAAGCAAAAGCCCAATCA---------AGAAGGAGAAGAATGGGGGAGGCGCCGTGCAGCGTGGTG---GCGCCGCG
CCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTCGGGAACGGCGGTG
ACGGTGCCGGCGCACGGGCTGGCGGGGTCCGCGGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGATGGTTCCGCAGC
GCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCCCGCCGTCGTGGAC
CGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCC-AGCCTAG
CTGGTGACGGTGCTGCCCTGTGACTGTGGTCATGAAGACAACAGCACTAATGTATATA-CACTACTCACTACTGCTCAAT
GGAGA-------AGTAGATTGATTATATGTAACGAA-TTTTTTAACCGCGACTCAAGCGATTTGTTGATG----------
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>chr2A_1_TraesCS2A01G313900
CATTTACTACCTCTACAACTGCAAAACGCTACTTAATTTCTGCAGAGAGGCACGAAAGGGTGAAGCCTGATACATCCAAG
CAGCCACATTTTCTTCTTAAGT----------------------------------------------------------
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---------------------------------------------------------AAAGAAAATGAGTTGTGGTCGTA
CAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACACTTTTTTAGCAGCTTTTT-CGTTTCTTTCTTTTCT
CCCTTGTTCCATTTCACCTACCGTGAGCATGAGCATATGGTCAGTACTGACAAACGTGTTTGAACCACTACTTGTTGCCT
GGACGTGTCAAGTGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACTAATGTACTGCTTTCTGGATATTA
TTAATGTTT--GCTTCGAGCTTTACCTGAACTGTACGCTACACAAGCAGTACAGTAGTACTACTTAATTTGGATAAGTGT
GGCTTTTCAGTTTAAATACGTTTGGCTATTCCACACTACATGCCATCCTCAAGCACTCTTAATTAAAATCTAACATGTGA
GGCTAGAACAAATGCAATTAGGAAGCCAACTTTTCTAGGAGAATATGGTTCAGCTCTATGGCTCTACCAACAATTATGAG
CTAGTACCAACTAGTGTAATACTTATCAATATAATCGGACATGTGTGTAATTACAAAAAAT---AAAAAAAACAAAGAGA
GGCAGGTATGTATAAAGTCACCTTCTGGTGAAACTCAGTACAATTATCA----GTAGCTCTTTTCAAAGACACATCTGAA
CTGCCTCAATTCTAATCGAATTGATTACCAATATCCCAAGAGA-CCCACACGTATGTTCTTTTCCCAAGATTCGTTCATG
CATGTTCATATTGTCATTTCAGCGTAACAGCATTTGCCAACAAGCATCTTAATATAGTACACTTT---------------
----------ATTTCATCAAGAGCTATGCACATGCAGAGCAAGTCACCAAACGCACAGCCCATCATCCCCTGATCCCCTC
TCCTCCTCCCG------------CCCTCTTTATATACCACACGCCAACACGAGAGGGGCCGAGGAAAACAGAAACCACGG
TCGAGCTGAGGCTACTGTACTGCCTCTGCCTGCACCAACC----------------------------------------
AAGAAAGCAAAAGCCCAATCA---------AGAAGGAGAAGAATGGGGGAGGCGCCGTGCAGCGTGGTG---GCGCCGCG
CCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTCGGGAACGGCGGTG
ACGGTGCCGGCGCACGGGCTGGCGGGGTCCGCGGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGATGGTTCCGCAGC
GCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCCCGCCGTCGTGGAC
CGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCC-AGCCTAG
CTGGTGACGGTGCTGCCCTGTGACTGTGGTCATGAAGACAACAGCACTAATGTATATA-CACTACTCACTACTGCTCAAT
GGAGA-------AGTAGATTGATTATATGTAACGAA-TTTTTTAACCGCGACTCAAGCGATTTGTTGATGTCTGGAAATC
TGAAGATTGCATTGCTACATTTCA---------------------------------TTCTTTTTAAGACCCTT-----T
TTTTTGCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGGTACGACTGTGCTATAGCAATTCCAAATTCCAATCATGTTG
GGAGTACAAACCATGGTTTGCTTGTGACCTACTAGTGGACTTGAGCAGTACATTTG---------TACCGCGAAGCGATA
ATTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTCGAGAGTCTGCTCCATGCTCACCAATAATGCCG
--------GAGAGTAGAAGCAATGAAGCAAAGCAAGGGTTGCCGAAATTCCGCGTTCGTAAACGGCAAGCAAAGCTAGTC
GGCAAAGTCGTTGCAGAAATCCCAAGTTCTGGTATACGGCACACCGGCCGATCCGCCATGGGCGCCGGCCCCCGT-----
---------TCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGCAAAAAAGAAAGAAA
AGGAG--------GAGGATTGAAGTCGGGCCAGCCGAGGTGATGATGGAGTCGTAGCTGAACGAAGCCGAGCCAACATTC
GTTTCAAAAAAAAAAGCCGAGCCAACAGGAGATAGATAGACGAGTTACCGGGCGGAGCACGCATGCGGCATGTTGCACTG
TTGTCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCCTTGCACTGCCAT
GTGCA--------CCGCCCTGCCCTGCTGCTTGCCGATGCTAATGCT---CGGCCGGGGTGGGCAGGGCATGCTGCATGA
TGCGTCCTCGTCGACGCCAGCCAAGACCTACTACCCTCATCACGGG----GCCGTTGCATCCGCCCAGGTTACGTGCGTG
CGTGGGTTCTCAAAGGGAAGAGAAGCCGATCCTTGTCGCGTGCATTGCCTAACCCGTGATCAGATCACCCATCTGCTTCT
CGACTCGGTGCCCGGTCGATCGAGCAGCCGTCTGCGTGCGTGCAAGCTGGAACGTGCGGG
>chr2B_10
---------CCTCTACAACTGCAGAGC--TATTTAATTTCTGCAGAG--GCACGAAAGGTTGAAGCCTGATACATCCAAG
CAGCCACATTTTCTTCTTAAGGCTGGTTGTAATGGGAGTATCATATACTAGTATCATGCATATGATACTAGTGTATGATA
CTACATCTGTAATGCAAAGTATCATATGTTGGTATCATAGAGTACTACATTTATTGGCATGCATGACACAAAGTAGCACA
TCATTTAATATGATACGGTATCATGATATGATACTCAAACATCTCTTTCTTCATTTAATTCTATGTCATCTCATTAAAAT
TGCTTAGTTGGCATGCATGATACTACGTATGATACTATCATTACGGTCAGCCTAAGAAAAGAAACTGAGGTGTGGTCGTA
CAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACTCTTTTTTAAGCAGCTTTT-CGTTTCTTTCTTTTCT
CCCTTGTTCCATTTCACCTACCGTGAGCAT--GCATATGGTCTGTCCTGACAAACGTGTTTGAACCACTACCAGTTGCCT
GGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGCTTTCTGGA---TA
TTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACAGTAC---AGTACTGCTTAATTGGGATAAGTGT
GGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAACTAAAATCTAACATATGA
GACTAGAACAAATGCAATTAGGAAGCCAACTTTTGTAGGAGAATATGGTTCAGCTCTACGGCTCTACCAACAATTATGAG
CTAGTACAAACTAGTGTAATACTTATCAATATAATCGGACAGGTGCGT---AATAAGAATTACCAAAAAAAGCAAAGAGA
GGCAGGTATGTATAAAGTCACCTTCCGGTGAAACTCAATGCAATTGTC----AGTAGCTCTTTCTAAAGACACATCTGAA
CTGCCTCAATTCTAATCGAATTGATTATCAATATCCAAA-AGA-CCCACACGTATGCTCTTTTCCCAAGATTCGTTCATG
CATGTTCATATTGTCATTTCAGCGTAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTTTTAATTGTCTTTT
TTATA-TTTCATTTCATCAAGAGCTATGCACATGCAGAGCAAACCACCAAACGCACAGCCCATCC---------------
----CCTGACCCCCTCTCCTCCTCCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGAAAACCAGAAAACCCAA
-CGAGCTGAGCCTACTGTACTGCCTCTGCCTGCAGTCCTGCGCCAACCAAGAAAGCAAAGCCCCAGTTCAAAAAAAGAAA
AAGAAAGCAAA-GCCCAATCAAGCAGAAGGAGAAGAGGAAGAATGGGGGAGGCGCCGTGCAGCGTGGTGGCCGCGCCGCG
CCGTTCCCCGGCGCGCTTCCGCCTGCCACGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGTCTCGGGAACGGCGGTG
CCGGCGCCGGCGCGCGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGGTGGTTCCGGAGC
ACCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGCCCCCCGGGGACGGCCGACGCCCCGTCGTCGTGGAC
CGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCT-AGCCTAG
CTGGTGACGGTGCTACCCTGCGA------TCATGAAGACATCAGCACTAATGTATATACCACTACTCACTACTGCTCAAT
GGAGATTGCAGAAGTAGATTCAT---ATGTAACGATTTCTTTTAACCGCGGCTCAAGCGATTCGTTGATGTCTGAAAATC
TGGAGATTGCATTGCTTACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGGTCTCTTCTTTTTAAGAT--TT-----T
TTTCTTCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGATAGTACTGTGCTATAGCAATTCCAA-------TCATGTTG
GGAGTACAAACCATAGTTTGCTTGTGATCTA---GTGGACTTGAGTAGTACTAGTATATTTGTACTACTGCGAAGCGATA
AGTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTTGAGAGTTTGCTCCATGCTCACCAATAATGCCG
--------GAGACTACAAGCAA--------AGCAAGGGTTGCCGAAATTCCGTGATCGTAAACTGCAAGCAAAA-TAGTC
GGCAAAGTTGTTGCAGAAATCCCATGTTCTGGTACACGGCACACCGACCGATCCGCCATCGGCGCCGGCCTCCATTCTGC
ACAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCACGCCCGTCTCTCGCAGAAAAAAGG----
------AAAAGGAAAGGATTGAAGTCGGGCAG-------------------------TGAACGAAGCCGAGCCAACAGG-
---------------------------------AGATAGACGAGTTATCGGGTGGAGCACGCATGCGGCATGTTGCATTG
TTGTCGCCATGAATGCCAGGATAGGGATAGGGATTTCCTAGGGATTAGGGAGAGGTGCCCTGCCCGCCTTGCACTGCCAT
GTGCAGTTGTGCACCGCCCTTCTCTGCTGCTTGCCAATGCTAATGCT---CGGCCGGGGTGGGCAGGGCA---TGCATGA
TGCGTCCTCATCGACGCCAGCCAAAACCTACTACCCTCATCACGGGGCCGGCCGTTGCATCCGCCCAGGTTACGTGCGTA
CGTGGGTTCTGAAAGCAAAGAGAAGCCGATCCTTGTCGCGTGCCTTGCCTAACCCGTGATCAGATCACCCATCTGCTTCT
CGACTCGATCGA------------------TCTGCGTGCGTGCAAGCTGGAACGTGCGGG
>chr2D_25
AACT---------------------GC--AACTTAATTTCTGCATAG--GCATGAAAGGGTGAAGCCTGATACATCCAGG
GAGCCACATTTTCTTATGAA------------------------------------------------------------
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-----------------------------------------------------AAGAAAAGAAACCGAGTTGTGGTCGTA
CAAAAGAAAATTAAAGAT-----TGCATGCACATGATCCGTTGCACTTTTTTTAGCAGCTTTTTCGTTTCTTTCTTTCCT
CCCTTGTTCCATTTCACCTACCGTGAGCATGAGCCAATGGTCTGTCCTGACAAACGTGTTTGAACCACTACCGGTTGCCT
GGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGCTTTCCTGA---TA
TTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACACTG--------CTACTTAATTGGGATAAGTGT
GGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAAAATCTGTTCGCTTATGAG
GCCAGAA-------CAATTAGGAAGCCAACTTTTGTAGGAGAATATGATTCAGCTCTACGGCTCTACCAACAATTATGAG
CTAGTACCAACTAGTGTAGTATTTATCAATATAATCAGACAGGTGCGTAATAATAATAATTACC-AAAAAGGCAAAGAGA
GGCAGGTATGTATGAAGTCACCTTCTGGTGAAATTCAGTACAATTATCAAGTAGTAGCTCTTTTCAAAGACACATCTGAA
CTGCCTCAATTCTAATCGAATTGATTATCAATATAAAAA-AGACCCCACACGTATGTTCTTTTCCCAAGATTCGTTCATG
CATGTTCACATTGTCATTTCAGCGGAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTTTTAATTATCTTTT
TTTTTGTTTCCTTTCATCAAGAGCTATGCACATGCAGAGCAAATCACCAAACGCACAGCCCATCC---------------
----CCTCCGC------------CCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGGAAAACAAAAACCACAC
-CGAGCTGAGCCTACTGTGCTGCCTCTGCCTGCACCAACC----------------------------------------
AAGAAAGCAAA-GCCCAATCAAGAAGAAGAAGG------AGAATGGGGGAGGCGCCGTGCAGCGTGGTGG---CGCCGCG
CCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTCGGGAACGGTGGTG
CCGGTGCCGGCGCACGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGGTGGTTCCGGAGC
GCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCCCGCCGTCGTGGAC
CGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCTAAGCCTAG
CTGGTGACGGTGCTGCCCTGTGA------CCATGAAGACAACAACACTAATGTATATACAG-TACTCACTACTGCTCAAT
GGAGA-------AGTAGATTGAT---ATGTAACGATTTTTTTTAACCGCGACTCAAGCGATTCGTTGATGTCTGAAAGTC
TGAAGATTGCATTGC-TACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGCTCTGTTCCTTTTAAGATCTTTCTTTTT
TTTTTGCTTCCAAAGCAGAGGCAAGTTCGGTGCTGTATG---GTACTGTGCTATAGCAATTCCAA-------TCATGTTG
CGAGTACAAACCATAGTTTGCTTGTGATCTACTAGTGGACGTGAGTAGTACATTTG---------TACTGCGAAACGATA
ATTGATCTGTGATTCCGTGCCCGGCCGATATTCTCGGC-------GTTGAGCGTCTGCTCCATGCTCACCAATAAATAAT
GCTGGAGAGAGACTACAAGCAATGAAGCAAAGCAAGAGTTGCCGAAATTCCGTGATCGTAAACTGCAAGCAAAGCTAGTC
GGCAAAGTTGTTGCAGAAATCCCATGTTCTGCTATACGGCACACCGGCCGATCCGCCATCGGCGCCGGCCTCCATTCTGT
GCAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGAAAAAAAAGAGAGAG
AGAGAAAAAAGGAGAGGATTGAAGTCGGGCCAGCCGAGGCGATGATGGAGCCGGGGTTGAACGAAGCCGAGCCAACAGG-
---------------------------------AGATAGACGAGTTACCGGGTGGAGCACGCATGCGGCATGTTGCATTG
TTGCCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCCTTGCACTGCCAT
GTGCA--------CCGCCCTGCCCTGCTGCTTGCCAATGCATTGCTAGCCCGGGCGCGGTGGGCAGGGCA---TGCATGA
TGCGTCCTCATCAACGCCAGCCAA-ACCTACTACCCTCATGGC-------GCCGTTGCATCCGCCCAGGTTACGTGCGTA
CGTGGGTTCTGAAACGGAAGAGAAACCGATCCTTGTCGCGTGCCTTGCCTAACCCGT-----GATCACCCCTCTGTATAT
CGAGTCGATCGA------------------TCTGCGTGCGTGCAAGCTGGAACGTGCGGG
>SNPs
S-S-SSSSS--------------S-S-SS------------------SS-------------------------------
---------------------S----------------------------------------------------------
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----------------------------------------------------------------S---------------
-----------------------------------------------------SSSSSS---------------------
------------------------------------------S--S-------------------------SS-------
------------S-------------------------------------------S------------------SSS--
---------------------------------------------S------SSS--------------S----------
-------S-----------------------------S------------------------S-------------S---
-S--------------------------------S-----------------------S---------------------
-----------------------------------------S---S-----S-S--S--S-----------S--------
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---------------------------S--------S--S----------------------------------------
--------------------------S--------------S-------SSSSSSSSSSS-SSS----------------
------------------------------------------S---------------------SSSSSSSSSSSSSSSS
SSSS------S---------------------------------S----------S--SS------------------SS
S---------S---------------------------------------------------------------------
-----------S-----------------------SS-------------------------------------------
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S-------------------------------S----------------------------------S--------S---
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-----------------------------------------------------------------------S--------
-----------------------SSSSSS---------------------------------------------------
-----------------------SSS---------S--------------------------S-----------S-----
----------------SSSS---S---------------------------------------------S-S--------
---------------------------------------S--SS---------------------SSSSSSS--------
--------------S------------S-----------------S----------------------S-----------
-----------------------------------------------S--------------------------------
------------S--S------------------------------------S-S--------S----------------
--------S---------------S----------------------------------S----------S--S------
------------------------------------------------------------------------S--SSS-S
--SSS----------------------------------S----------S--SS-S--------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S------------------------S--
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-----------------------------------S----------------------------------SSS-------
---------S--------------S------------------------------------------------------S
----------S--------------------------------S------------------------------------
-------S-SSSSSSSSSSSSSSSSSSSSS------------------------------
>forward_1275
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-------------------------------------------------------CAGCCCATCATCCCCTGATC-----
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>reverse_2563
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--GAGGAGGATTGAAGTCGGGC----------------------------------------------------------
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