>input_sequence_74379
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----------------------ATGGAGAAGGTCCTCGCCGGCATGGCCAGGCCATGCAAGTTCAGCAGGCACGGCTGCG
AGGAGACGGTCAAGTTCACGGAGCTGCGGAGCCACGAGGAGGAGGCGTGCCCATACGCGCCCTACAGCTGCCCGTTCGAC
GGCTGCGCCTACCGCGGCGCCCTGCTCTACGACCACGTCCGCGACGAGCACGCGCT------GGCGCCGGCGCCCAACTG
TGACAC---AGGCGGCCTGCTCCGGGGCGCGAGCGTCACTCTGCGGCGGGACGAGCCTGCTGTCCACGCGCTCCTTCACG
GCGACAGGGTGAGCGTGATCCTCCTGCTCAACGGCGGCGACGTCCTGGCTGGGCGCTCGCTGTCGCTGGTCCGCATCTGC
CCACATCCCAAGCCCGGCCAAGAAGACGAGGAAGTTGAGTACAGGATGGTGGTG--ACGCGCGACGAGCCTGAGCCTGGG
ACTGGG------TCGCCCTCGCTGGCGGCGTCGGGGAAAGTGCAGTACGTCCGCCGGCTGGAGGGGTACCGGCCCCGACA
CTTCCTATTCGTGCCGGACGCTTTCTGGGGCTCTTCCGGCAGCGTCGTCGTCACCGTCACCACTACCGTCACCGTGCATC
TCTGA---------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G504400
AATGTTAGAAATATGCAATAACAAAGTTAATTCACTGATGCATCGGCATCGATTTAATATTGTGGCGTTGATATTTTTCT
CTATATTTTGTTTAATTTTATTATGTTTTATTTAAGACAAATTTTTTATGCGGACTGAAAAAACGGAGAGAATATTCTAG
TTGCGGCTCAAAAGGATAAGAAGCTTTTACCTTGGAAGTTGATAATCTCACAG---------------------------
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---------------------------------CACAACAGCCCCGTGCTGGCACACTTGTCTACACGGACCTTTTTTAC
CACGCCGCGTGTGGGTCTGCGTGGCGCCCGAACATTAAGCGGCGTGTTCACGTGTCCAGTTGTTCCCTGCCATGTCCTGC
CGTGTGGCCACGTTGGTCGTCCAGTGCTTTCGTGCTTGCCTATGAAAACACGGCCGCGCAGGAGTTGGCCAGCCGACGCT
GGCCAACCGGAGACATCGCCAAACACGACGGGCCTCCGCCTCCCGCTGCACAGATTTCTCCGCCTCAACCTCCATTCATT
CAGGCGAGCACGCTGATGCGATGCAATGCTACTTCTTCTGCTCCTATGCTGCTTGGTGTTCATGTTGCTGAACCGTCGTC
GTTGTTTGCTTTTGCCAGGCTACGCGTACGTACGTGATGGGGCGAAAGAGGAGCGCTTCCAAGAAGGCGAAAATCAGCGC
CGAAACTCCAGACAGCACGATGGCGCCGCAGGAAGAGTTAGAGACGAGCAATGTTTTCTCCCACGACATGGACACGCTTG
AATGTGAAATCTGCTCCCTGCC-TTTTGATTCGCAGATTTTCATGGCAAGTGTCCCAAAAACGTAACTTCTGCATTAGTC
GCAGCATGATTTTGTTCAATCCTTGCGCAGAACCATGCCAATAATAGTTTGTTTGTCTCTCTAATAACTTGATTGATGAG
CAGTGCAAGAACGGGCATGCGGCGTGCGGCAACTGCTGCATCGGCATGA-CCGCAAGTGCTCCTGCTGCCACGAGCGCAT
CGGCGACATCCGTTGCCGGGCGATGGAGAAGGTCCTCGCCGGCATGGCCAGGCCATGCAAGTTCAGCAGGCACGGCTGCG
AGGAGACGGTCAAGTTCACGGAGCTGCGGAGCCACGAGGAGGAGGCGTGCCCATACGCGCCCTACAGCTGCCCGTTCGAC
GGCTGCGCCTACCGCGGCGCCCTGCTCTACGACCACGTCCGCGACGAGCACGCGCT------GGCGCCGGCGCCCAACTG
TGACAC---AGGCGGCCTGCTCCGGGGCGCGAGCGTCACTCTGCGGCGGGACGAGCCTGCTGTCCACGCGCTCCTTCACG
GCGACAGGGTGAGCGTGATCCTCCTGCTCAACGGCGGCGACGTCCTGGCTGGGCGCTCGCTGTCGCTGGTCCGCATCTGC
CCACATCCCAAGCCCGGCCAAGAAGACGAGGAAGTTGAGTACAGGATGGTGGTG--ACGCGCGACGAGCCTGAGCCTGGG
ACTGGG------TCGCCCTCGCTGGCGGCGTCGGGGAAAGTGCAGTACGTCCGCCGGCTGGAGGGGTACCGGCCCCGACA
CTTCCTATTCGTGCCGGACGCTTTCTGGGGCTCTTCCGGCAGCGTCGTCGTCACCGTCACCACTACCGTCACCGTGCATC
TCTGATCCACGCCGACGCGTGTGTGTTGTGCTCTGCTCTCTGAAGTGAACTTGGAGGCTGAAGCTGCTTAATCCCTGTAT
CC------TGCTGGGTGGATCTGTAGTGTATTCTGTAGTGGTGTTGGTGCTGCCGGTGTGAGGTCCAACTACG-------
-TAGTTGCAAGTAGCAGTATGTTAGTAGGTCCGGTTCTGCTAACAGCCGAATCC----CTGTATCCTGGTGGGTGGATCT
TTTGTTTTTGGGCGCGCCAGGGATCATCAGGCAGAGGCAGGGTGGTGTAGTACTCGAAGAGTCTGTAGCTGTATACAGTA
CA----TATGTAAGTATGTTCCATGGTGGGATCGTGTATGTATCAACGTATGTATGACTCGGCGGTATGACCATGGTCTC
ATCATGTGACAATCCTTGTGCTTCATGTGTCTACTTGTCAGTTATTACTGCATACGATCTAGACCGTCGCACTTGTGACG
ATGTCCATTCACCATTCTCCTCTCTCTCTCTCTCTCTCTCTGTTTTCATTTCGGCGCCGTCCTCGTATGTGAGGTGGCCG
TAATTGGCCGCGTTCGTGTCGCCGCGCAACGAATGTACGCATGCGGTGCAGGGCAGTGCACGCGCAGCTAGCGTCCAGAG
CTGCCGACAACGATGACCCTGCAGCATAAACTAGAGACCGACGGACGGCTGAACAGGACGATGGAGAGGATGACGACGAA
AGGAGCCGCACGCATACGCACCAGCACGCACGCACGCCCTGACTCGCAGGCGCGTGCATGGCAGACACGCAGCACTGGGA
AAGCTCCCTGCTTGGACAGCTCAGGCTTATCCATGCATGCTAATGCTAGCAAGCGAGTATAAAATGACCTGCAGAGTACT
GAGGCTTCCTTATCACAAGTACTAGTATTCACAACCGTGCAACCGACGGATTTTCCAGGACTTACGGATGGACATGCGCA
CCTTCGTGCAACGACTGAAGGACGAAATCACTATGTGAAACATGACAGGAGCTGGAATTCCTTTTGA
>chr4A_209
TGCAGTGCAGTGCACTCGCAGCTAGCGTACAAAGCTGCCGATAACGATGACCTAGTGCTCTACTAGAGATCGACCGACGG
ACATGACGATCGATCGAGAGGTTGACGACAAAAGGAGCCGCACGCACACGCACCAGCGAGCATGCATGGACTGACTCGCA
GGTGCGTGCATGGCAGACACGCAGCACTGGGCGACGACGATATGTACGGAAGCTACGTGCTGGACAGCTCATACTTATCC
ACGCATGCTAGCAAGCGGGTATAAAATGGCATGCTGTCCGCTGAGGCTTATCACCACCGATCCATCGATCTTTTTCATCT
TTCCAGATAAAGATCGAGTTTGCTAGGTCGATATGGGCTCTCTCATGGCTGGATGGAGCTCCCATGCGCTCGACGACGAC
CTCAAAGGTACGTCCGCCGTGTATCTACGTACAACCATCCACCATCGATAGTGCATGCAACTTCACGTTGCAAGATTCCT
AATTAGCCTTGTAGTATAATGGTATCTATCATCATTCTATCTATGCAGCTCGTTTCATGAGAAATCGTTCGCTGACCAAG
GACGAGGTGGAGGCCTTCTGGAGGCAGCACAAGAAGCCGGCGCCGGAGGACAACGTCGACGGCGGCGAGACCGTCGTCGC
CTCCTCTCCCCGCGTACGTAACCGGTTCCCATGCGTGCGTCCGTCGGATTTGCATCGGGTTCCTTAAGCAAGCTTGTCAA
ATGCGTATACTTGATTTTTTAACTCTGCTTGCATGTGTTGGTTAATTAGAAGGGGAGCCCGAGGTTGACCACGCGTCCGC
CGACTCTATCTCATGTCCGTTCGTCGCCGCCGGTGATGACGAGTAGCGTGGACGGCGACGGCGACGGCGAGGCTGCCGCT
AGCCCCAGCGCCAGCCGCGACTGGTACGTATCCCTTATAGCATAGTAGCATGAGCTTCTTGAGTTTTTTTTTTGTTTGCG
AAATGAGCTTCTTGAGTTCATACATGAACATATTCATAGCATGCATGGATCCATGTTTACATGTATCGATCACGTACGGC
TGGTTGTGGCTGCGTGCATGCAGGTGGACGAGGAGCAGCTGGGCGTTCCTCAATGAGCCACCTCCGCAGCAGCGCGAAGG
AGGAGGCGTTGGGCAAGGCGCCGCGGCCGCCGTCTGATCATCATCTCTTTAATTACTTTGCTATAAGCTGGCTTTGTATC
CCTGTAAATAAGTACTCTCTTAAACTATTAAATCACTATCTAAACACTCTTTTATTAGTTTACGGAGAGAGTACGTACCA
GCCATGTAATTGGAGTGGTGGTTTTGCTAATGTTTGATTTCTATACGATGTGGAGTGCATGTCACCTTTTGTATTATCAC
TCATGTAACCTTGGAGATATACTATGTGTATATGTCACTTTCTGCATTGGCATCTCAGATGTTACAAAAAACGAAAATTC
AGGGGAAGCATTTTGGAGCACTGCGGATGTCTTTTCGGGGAGAAAATTTGCAGGATGAAGAGTATTTGTTGATACTGACC
TAAAAAAATCAGTGTTTTTTGTTTTTTACTATACTTTCGGAATTTACGGTTCATGCAGTGCATTTGACCTCGAGATTAGA
TGTGCAGCTCGTTTCATAAGAAACCAATCGCTGACAAAGGAAGAGGTGGAGGCTACGGTGCAGGTGCTGGGTTCCAGCTT
GTGATGGCCAAGATCGTTTGTCTTAGGTTGCGGGGCTCCTCCGCTAGGGGGAGTGAACGGTAAAAAACATATTTACAGAA
TTGTGTCAAAAAGTATTATTTTTTCATATTTTTTTATAAAAAAATTAGCCACCGAATTAGACCGTTTTGAGCACGATTAT
GACGGATGGGTCCCACCAGAAGGGTGACCACAGCACAACAACCCCGTGCGGGCACACTTGTCTACACGGATCATTTTTAC
CGCTCCGCGTGTGGGTCTGCGTGGCGTCCGTACATTAAGCGGCGTGTTGACGTGTCCAGTTGTTCCCTGCCATGTCCTGC
CGTGTGGCCACGTTGGTCGGCCAGTGCTCTCGTGCTTGCCTATGAAAACCCGGCCTCGCAGG------------------
----------AGACATCGCCAAACACGACGGGCCTCCGCCTCCCGGTGCAGATTCCTTCGCCCCG--ACCTCCATTCATT
CAGGCGAGCATGCTGATGCAATGC--------TTCTTCTGCAT-TATGCTGCTTGGTGTTCATGTTGCTGAACCGTCGTC
GTTGTTTGCTTCCAAGAAGAATTAG---------------------AGAGGAGCGCTTCCAAGAAGGCGAAAATCAGCAC
CGAAACTCGGGACCGCATGACGGCGCCGCAGGAAGAATTAGAGACGGACAATGTTTTCTCCCACGACATGGACACCCTTG
AATGTGAAATCTGCTCCCTGCCTTTTTGATTCTCAGATCTTCATGGCAAGTGTCTGAAAAACTTGACTTCTGCATTGGTT
GCAGCATGATTTCGTTCAATCTTTACTCTGCTAATAACTTGCATGGCTTGTTTCTCTG--------ACTTGATTGACGAG
CAGTGCAAGAACGGACATGCGGCGTGCGGCAACTGCTGCATCGGCATGAACCACAAGTGCTCCTGCTGCCACGAGCGCAT
CGGCGACATCCATGAACCA--------------------------------------CAAGTTCCGCAAGCTCGGCTGCG
GGGAGACCGTCAAGTTCACGGAGCTGCGGAGCCACGAGGAGGAGGCGTGCCCATACGCGACCTACAGCTGCCCGTTCGAC
GGCTGCGCCTACCGCGGCGCGCTGCTCTACGACCACGTCCACGACGAGCACGCGCAGGCGCCGGCGCCGGTGCCCAACTG
TGACATGGTGGGCGGCCTGCTCCGGGGCGCGACGGTCACTCTGCGACGGGACGAGC---CTGTCCACACGCTCCTTCACC
GCGACAGGGTGAGCGTGATCCTCCTGCTCAACGGCGGCGACGTCCTGACCGGGCGGTCGCTGTCGCTGGTCCGCATCTGC
CCGCATCCCAAGCCCGACCAAGAAGACGAGGAAGTTGAGTACAGGATGGTGGTG--ATGCGCGGCGAGCCCGGGC-----
-CTGGG------TCGCCCTCGCTGACGGCGTCGGGGAGAGTGCAGTACGTCCGCCGGCTGGAGGGGTGCCAGCCCCAACA
CTTCCTGTTCGTGCCGGACGCTTTCTGGGGCTCTTCCGGCAGCGTCGTCGTCAC------------------CGTGCATC
TCTGATTCACGATGACGCATGTGT---------------------------------------CTGCTTAATCCTGTATC
CTGCTGGGTGCTGGGTGGATCTGTAGTGCAG--TGTAATGGTGGCGGTGCTGCCGGTGTGATGTCCAAGTACGTCGTACA
ATAGTTGCAAGTAGCAGTATGTTAGTAGGTCTGGTTCTGCTAACTGCCGAATCCCTGTCTGTATCCTGGTGGGTGGATCT
TTTGTTTTTGGGCCCGCCAGGGATCATCAGGCAGAGGCAGGGTAGTGTAGTGTTTAG-GAGTTTGTAGTTGTATACAGTA
CGTACGTATGTAAGTATGTTCCATGGTGGGATCGTGTAT-----------------------------------------
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>chr5B_917
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-----------------TGCCGCGTGCGGCAACTGCTGCATCGGCATGAACCGCAAGTGCCCCTGCTGCAACGAGCGCAT
CGGCGACTTCCGTTGCCGGGCGATGGAGAAGGTCCTCGCCGGC----------CATGCAAGTTCAGCAAGCACGGCTGCG
AGGCGACCGTCAAGTTCACGGAGCTGCGTGGCCACGAGGAGGAGGCGTGCCCATACGCGCCCTACAGCTGCCCGTTCGAC
GGCTGCGCCTACCGCGGCGCGCTGCTCTACGACCACGTCCGCGACGAGCACGCGC------------CGGCGCCCAACTG
TTACAC---GGGCAGCCTGATCCCGGGCGCGAGCGTCACTATGCGGAGGGATGACC---CTGTCCACGCGCTCCTTCACC
GCGACAAGGTGAGCGTGATCCTCCTGCTCAACGGCGGCGACGTC------------TCGCTGTCGCTGGTCCGCATCTGC
CCACACCCCAAGCCTGACCTAGAAGATGAGGAAGTTGAGTACAGGATGGTGGTGTGACGCGCGACGAGTCTGGGCCTGGG
ACTGGGACTGGGTCGCCCTCGCTGACGGCGTCGGGGAAAGTGCAGTACGTCCGCCGGCTGGAGTGGTACCGGCCCCAGCA
CTTCCTTTTCGTGTCGGACGCTTTCTGGGGCTCTTCCGGCAGCGGCGTCGTCACCTTCACCACCACCATCACCGTGCATC
TTTGATCGAC----------------------------------------------------------------------
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>SNPs
SSSSS-SS-SSSSSSSSSS-S-S-SSS--SSSSS---SS-SSSSS-SSSSSS-SSSSSSS-SSSSSSSSSSS-SSSSSSS
SS--SSSSSSSSSSSSSSSSS-SSSSSSS-SSSSSSS-SSSSSSSSS-S--SSSSSSS-SS-SSSSS-SSSSS-S--SSS
SSSSS-SS--SSSSSSSS-SSSSSSSS-SSSSSSSS-SSSS--SSS-SS-SSS---------------------------
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----------------------------------------S--------S--------------------S-S-------
-S-S----------------------S---S-----------------S-------------------------------
-------------------S--------S--------------------S-----S------SSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------------------------S----S-SSSS-SSS-S--SSS-------------
----------S--------S----SSSSSSSS---------SSS------------------------------------
-----------SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S-
--------SS---S---S--S---------------S---------SS---------------------------S----
--------------------------------S-----S---------------SS------S-S-----------S--S
------------S--------S--S-S-S-SSSSSSS-SSSS-SSSS--SS--SSSSSSSSSSSSS----------S---
--------------S-----------------------------------------------------------------
-------------------------------------------SSSSSSSSSS---------------S-----------
-------S------------------------------------------------------------------------
--------------------S----------------------------------S------------------------
---------S----------------------------------------------SSS--------------------S
-----------------------------------------------S-S-----S------------------------
----------------S-------------------------------------------------------S-------
------------------------S---------------------------------------------------S---
------S------------------------------------------------S-------S---S------------
-----------SS-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SSSSSS
-S--------------------------S-SSS----S-----SS----------------S------S-----------
-------------------------------S------------S-----------------------------------
-------------S-----------------------------S-------SS-SSSS----S-----S-----------
-S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2252
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------------------------------------------------------------------------CCGTCGTC
GTTGTTTGCTTT--------------------------------------------------------------------
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>reverse_4202
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-----------------------------------------ACCGACGGATTTTCCAGGAC-------------------
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