>input_sequence_74375
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--------------------------------------------------------ATGTCCATCAACCATCAATGCAAT
AATCCACGTACGGTTGTGAGCGGTTCACCAGCAAGATACA---TAGAGGTTACAGAGAAGCCAGCAGCAGCAAGCAAGAT
TGAGCATTCACGGATGGTGGCCGGGGCCGTGGTGCAGGCGTCATCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGCA
AGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTTTCCGAGGAGGAGGCCGCGGCGATC
CTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCCGGAGA
CAACGGTGGGGCGGCCGGAGACGACGACGAC------GACGAGGTGAGGCGGCGGTGCCTGAAGGAGGCGTTCGCCATGT
ACGCGACGGGGGGCGGCGAGGAG---GGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGG
TCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTTGACCTCAACGGCGACGGCGTCCTCTCCTTCGA
CGAGTTCAGGGTCATGATGATGGCCAATTTGTAA----------------------------------------------
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>chr5B_1_TraesCS5B01G152400
AAGTGGACTTTATAAAGTTGTTGTCAGCCTTTAAAAAGAATCATAAAGTAAGAGTAAATGTCAAAAAAAAAAGTTGAGGA
AATAAAGCGTGGTAAAGTCTAGAACAATCGAGGAGTGCCTTGGTTTGAGGTTTGTGCATATTATACATTGTAAATCGTAA
AGTTAAGACATAATGATAATTCATTTAGTGAAAAAAGAAGGCTTGGAGAACTTAAGCATGGAATACTCTAGAACAAAG--
-AAGTGCTTGTGTTTTGAGATTTGTATATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGG
GTGGAGATGATATTCAGTGACTAACAGTGCTTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAATGATCAAT
ATTCAAAATTATTCGTAAACTATACAATGGTATAAAAGTGTTACCTTGAAATGGAACCATGGCAAAACAGAACAAACTTG
AAAACTACTAACCACATCCTCGAAATTTGGTCAAAATAATGATTTTTGACATGATCTTGAAAACAATGACCAACAGCATG
GGAAAACATGAAATGAGAGACT-TTAACAAAAACTACCGAAATGCGTGGGTGTTGCCTCGAGTAAAGACGCAACAAGATT
TCTGTGAGTTTACACAAACCAATGGCATTGGGAATTTTCTCAATACCATGAAAAAATGATCTCTAAAAAAATCCAAATCT
ATAGTATAGTATGGTATAGCAAAAATGAAGAAATCCGATACCAATGTTTGAC----------------------------
---------------------TAAAACTTTGTTGTGACGC-------TTAATTAATTAATTAATTAATGCACTGGGAATG
AAGGACGCACGATGCATCGCAGT-CGCAGCACACAGAAAGCTGGTGATAACCCTA-----CGGCTACGCGCATATCCAGG
GAACCTGATAGCGTTGCTGACGCGTCGCCACGGTCATGGAACCGGC------------------------------CATT
TTACCCGTACAGAGACCGTACCAGTATATATAGCACCAACACCCACGCGGCACACCATGTCCATCAACCATCAATGCAAT
AATCCACGTACGGTTGTGAGCGGTTCACCAGCAAGATACA---TAGAGGTTACAGAGAAGCCAGCAGCAGCAAGCAAGAT
TGAGCATTCACGGATGGTGGCCGGGGCCGTGGTGCAGGCGTCATCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGCA
AGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTTTCCGAGGAGGAGGCCGCGGCGATC
CTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCCGGAGA
CAACGGTGGGGCGGCCGGAGACGACGACGAC------GACGAGGTGAGGCGGCGGTGCCTGAAGGAGGCGTTCGCCATGT
ACGCGACGGGGGGCGGCGAGGAG---GGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGG
TCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTTGACCTCAACGGCGACGGCGTCCTCTCCTTCGA
CGAGTTCAGGGTCATGATGATGGCCAATTTGTAAAGGAAGGATGGTTTCATTTCATTCGTTCGCTTTTCTCTTCTGTATT
TT------------------------------------------------------------------------------
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----------------TGACATGTGGTTGCAGTTGTTCACATGATGGACGTTTCAATTGTATGTTGAGGC-TTGGGTGTG
ATGCTTAAATTTCAAGTTTTCTTCTTTTTCTTTTCAGTTTT---GATGATGAAGAGAAGTTGAGGGTGTCATGTTGTAAA
TAAGCTCATACCTCTTCCTATTTGACATCTACTGTAGTTCATTGATAACAATCTGGTTCATGATTATTTTAAGCAAATGG
TAAACCCTCCGTTGACATTTTTTTTGGAACAAATAATAAAGGATA-------------TTGGCCTGCTCATGGGGCGGCT
CACTTCCTTCTCCCCTTTGCATGCAACAATAACACATGAGCATGAT---ACCAAAAAATTCTTTAAACTTTGAATTTCAA
AAAGTTTATCTCTCAAACCGTTAACCTGGTCGACGGTCCGCTTTCATCATTATCTTCGTCACGCGAGATTTTTGAAACTA
AATCCCATGTCGGAATGATTTAATTACTTTTTTTGTCGATACTAGCCACATTACTATCACTTATTTACCATGTTATTAGC
TATTTAGTTGTCAAATTGATGAAAGTCGATATACTCATCTAAAAGACTTTACAGTATGCCTCCGTCCCGAATTTACTATG
ATCTAGATACATCCATTTCTGCGGCAAGTAATTCAGAACGAAGGGAGTACTTGTGTGGGTTGATATCTCTTCTTACTTAT
TGTTACACTTGAATACTCACTCTTGGGCTCAAAGTAATATTGCAATGTTTAAAAACATACACAATTATTGACCGGTAAGG
CGGTAACTGTACACAAACTATGTGACAAATGTTCCCACTTAAAAATGGCACTATGTGATAACATAATCTGGCAACTTGTG
ACGACAAAAGAAATCACTGAAGCACGTCAACGTGAGATCGTTTGAAAGCCCTCTCGGAGGAGAACCCACCGGTGAAAGAA
AGGCCGCTAATCGGATTAACGGTTTGCG
>chr5A_1
AAGTGGACTTCATAAAGTTGTGGTCAGCCTTTAAAATGAATCATAAAGTAAGAGTAAATGTCAAAAAAAAA---TGACGA
AATAAAGTGTGGTAAAGTCTAGAACAACCGAGGAGTGCCTTGGTTTGAGGTTTGTGCATATTATACATTGTAAACCATAA
AGTTAAAACATAATGATAATTCATTTAGTGACAAAAGAAGGCTTGGAGAACTTAAGCATGGAATACTCTAAAACAAAG--
-AAGTGTTTGTGTTTTGAGATTTGTACATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGG
ATGGAGATGATATTCAATGACTAATAGTGATTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAGTGATCAAT
ATTCAAAATTATCCATACATTATATAATGGTATAAAAGTGTTACCCTCAAATGGAACCATGGCAAAACAGAAGAAACTTG
GAAAGTACTAACCACATCCTCGAAATTTGGTCAAAATAATGATTTTGGACACAATCTTGAAAACAATGACC--CATCATG
GGAAAGCATGAAACGAGAGACTCTTAACAGAA--------------------TTGCCTTAAGTAAAGACCCAAAAAGATT
TCTGTGAGTTTTCACAAACCAATGGTATTGGGAATTTTCTCAATACCATGAAAAAATGATCTCTAAAAAAACCCAAATAT
ATAGTATAGTAT-----AGCAAAAATAAAGAAATTCGATACCAATGTTTGACGTGAAATATTCCCTCGAAGTCAAGTAAT
GCAAAAATAATCATTTTGTACTAGAGCTTTGTTGTGACGC-------TTAATTAATTAATTAAC----GCACTGGGAATG
AAGGACGCACGATGCATCGCAGTTCGCAGCACACAGAAAGCTGCTGGTAACCCTA-----CGGCTACGCGCATATCCACG
GAACCTGATAGCGTTGCTGACGCGTTGCCACGGTCACGGAGAAGGTTCTAAGCCTGAACTCTCTGGAATTATTTGACATT
CTGCCCGTACAGGGCCCGTACCAGCATATATAGCATCAACACCCATGCGCCACACCATGTCCATCAAGCCACGTGATA--
--------TAAGGTTGTGAGCAGTTCACCAGCAAGATACA---TAGAGGTCACAGAGAAGCCAGCA--AGCAAACAAGAT
TGAGCATTCACGGATGGTGGCCGAGGCCGTGGCGCAGGCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGCA
AGGTGTCGGCGGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCGGCGGCGATC
CTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGATCGGCCTCGCCGCCGCCGGAGA
CGACGGTGGGGCGGCCGGAGG---CGACGAC------GAGGAGGTGAGGCGGCGGTGCCTAAGGGAGGCGTTCGCGATGT
ACGCGACGGGGGGCGGCGAGGAGCAGGGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGG
GCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTCTCCTTCGA
CGAGTTCAGGGTCATGATGATGGCCAATTTGTAAAGGACGGTTGGTTTCATTTCATTCGTTCGCTTTTTTCTTCTGTGTT
TT------------------------------------------------------------------------------
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----------------TGACATGTGGTTGCACTTGTTCACATGGTGGATGTTTCAATTGTATGCTGGGGGTTTGGGTGTG
ATGCTTAACTTTTGTTTGTTCTTCTTTATCTTTTCAATTTT---GATGATGAAGAGAAGTTGAGGGTGTCATGTTGTAAA
TAAGCTCATACCTCTTCCTATTTGAC-----CTCTAGCTCATTGATAAGAATCTTGTTCGTGATTAGTTTAAGCAAATGG
TAAACCCTCTGTTTACTC--TTTTTTGAATAGATAATAAAGGATATTGGCGCCGCATGTTGGCCTTCTCATGGGGCAACT
CACTTCCTTCTCTCCTTTGCATGCAACACTAACACATGAGCATGACATCACCAAAAAATTCTTTAAAGTTTGAATTTAAA
AAGAA-----TCTCAAACCGCTGGCCTGGTAGACGGTCCGATTTCAT---------------------------------
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>chr5D_1
AAGTGGACTTTATAAAGTTGTTGTCAACCTTTAAAAAGAATCATAAAGTAAGAGTAAATGTCAAAAAAATGACA-----A
AATAAAGTGTGGTAAAGTCTAGAACAACCGAGGAGTACATTGGTTTGAGGTTTGTGCATATTATACATTGTAAATCGTAA
AGTTAAAACATAATGATAAT-CATTTAGTGAAAAAAAGAAGGCT-GAGAACTTAAGCATGGAATAATCTAGAACAAAGAA
TAAGTGTTTGTGTTTTGAGATTTGTACATTGTGCTTAAGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGG
ATGGAGATGATATTCAA----TAATAGTGCTTGGATTTGTCACATTTGTACCATCATACTGGCCTCATCCAATGATCAAT
ATTCAAAGTTATTCGTACACTATATAATGGTATAGAAGTGTTACCTTGAAATAGAACTGTGGCAAAACAGAACAGACTTG
AAAACTACTAACCACATCCTCAAAATTTGGTCAAAATAATGATTTTTGACACGATCTTGGAAACAATGACCAACACCATG
GGAAAGCATGAAACGAGAGACTCTTAACAAAAACTACGAAAATGCGCGGATGTTGCCTCAAGTAAAGACCCAAAAAGATT
GTTGTGAGGTTACACAATCCAATGGAATTGGGAGTTTTCTCAATACCATGAAAAAATTA--TCTTGAAAAATCCAGATCT
ATGGTATGGTAT-----GGCAGAAATGAAGAAATCCGATACCAATGTTTGACGTGAAATATTCCCTCAAAGTCAAGTAAT
GCAAGAATAATCATTTCTTACTAAAGCTTAGTTGCGACGCTTACTAATTAATTAATTAATTAATTAATGCTCTGGGAATG
AAGGACGCACGATGCATCGCAGCAG-----ACGCAGAAAGCTGGTGATCATAACCCTACGCGGCTACGCTCAT------G
GAGCCTGATAGCGTTGCTGACGCGTCGCCACGGTCATGGAACCGGC------------------------------CATT
TTACCCGTACGGAGACCGTACCAGTATATATAGCACCAACACCCACGCGGCACACCATGCCCATCAACCATCAAGGCAAT
AATCCACGTGAGATTGCAAGCACTTCACCAGCAAAACACGTACTAGAGGTTACAGAGAAGCCAGCA---GCAAGCAAGAT
TGAGCGTTCACGGATGGTGGCCGAGGCCGTGGCGCAGGCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGAA
AGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGCGGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCCGCGGCGATC
CTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGGACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCTGGAGA
CGACGGCGGAGCGGCCGGAGG---CGACGACGAGGAGGAGGAGGTGAGGCGGCGGTGCCTGAGGGAGGCGTTCGCGATGT
ACGCGACGGGAGCCGGCGAGG---AGGGCGCCAGGATCACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGG
TCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGATCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTCTCCTTCGA
CGAGTTCAGGGTCATGATGATGGCCAATTTGTAAGGGGTGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGACATGTGATTGCAGTT--TCATATGATGGACGTTTCAATTGTATGTTGGGGC-TTGGGTGTG
ATGCTTAAATTTCAAGTTTTCTTCTTTTTCTTTTCAGTTTTGATGATGATGAAGAGAAGTTGACGGTGTCATGTTGTAAA
TAAGCGCATACCTCTTCCTATTTGAC-----CTGTAGTTTATTGATAAGAATCTTGTTTGTGATTATTTTAAGCAAATGG
TAAACCCTCTGTTGACATTATGTTTTACATAAATAATAAAGGATATTGGCGCCACATGTTGGCCTTC--ATGCGGCGACC
CACTTCCTTCTCTCCTTTGCATCAACAAT---------------------------------------------------
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>SNPs
------------------------------------------------------------------------SS---S--
-------S-------------------S----------------------------------------------------
------S-------------------------------------------------------------------------
------S-------------------S-----------------------------------------------------
S---------------S-------S-------------------------------------------------------
-----------------S------S-------------------------------------------------------
---------------------------------------------------S-----------------------S----
-----S-------S-----------------------SS-------S--S---------S---------S---S------
-------------------------S------------------------------------------------------
------------SSSSS---------------------------------------------------------------
-------------------------S------------------------------------------------------
------------------------------------------------------------------------------S-
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--------------------------------------------------------------------------S-----
----------S----------S--------------------------------------------SS------------
-----------------------S--------S---------S-------------------------------------
-------------------------------------------------------S------------------------
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-S------------------SSSS---------------S----------------------S------------S----
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-----------------------------------------------S--------------------------------
--------------------------------------S--S--------------------------S--------S--
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------------------------------------------------------------------S-------------
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--------------------------SSSSS-----------------S-----S----S--------------------
---------S---------S-----S---S-----------------------------------S-----------S--
------------S---------------S----------------S---------------------S---------S--
--SSSSSSSS----------S-SS------S---------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_634
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------------------------------------------------------GCCTCGAGTAAAGACGCAAC------
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>reverse_2867
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------------------------------------------------------------------TCTGGCAACTTGTG
ACGACA--------------------------------------------------------------------------
----------------------------
