>input_sequence_74368
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-----------------------------------------------------------------------------AT-
-----GAAGGTCCGACGCGGCGGCGCCGGCTTCCCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTAGCCGTCGCTGA
CCCGCTCCACAAGAAGTCGCAGCC------------GCCACAGCCAGGAAAGCAGGCCGACAACCCCTCCTCCACCACCA
CA---ACCAT------GGCGGCCACCACACAGGGTAAGTAACTAGTCTCTGAGCATAC----ATAATTCGTATCACGATC
CGCTGC------------CACAGGCACTACATACGTAC----TAACAGCA-GCAACCAATCGGTGGTCC---A-TT----
------TCAGACAGAGGCGCCGGAGAAGAAAGCGGCGAGGACAAGGCCAAG---GCCGC---GGCGGCGTCCGGGATCGT
CACGGCGGGGGTGCAGCGGCTGCTCAAGGGAATCAAGACCTTCTTCGCGGCGTACGACAGTGAGGAAGAAGATGAA---G
AGGAGAGGGAGATCGTGATCGGGTACCCCACGGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGGATCAACAAGGTG
GGCGGCATGGGCGTGGGC---------------------------ATGGTCGGCGCCTTCTCCCTGCCATCCTCCCTCTC
CCTCCGCCAGCTCGACATCGCCATGGACCCCGGCGCCGCCACCACCACCTGCATCAACTGA-------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>chr4A_1_TraesCS4A01G337100
ATATATGCAGGTGGTTGGGTTGGCCACTCGTTAGCCTCGCCAAAATCCCGCCCATTATCAAATTGCTGGTGTAGATTTCA
TTTGGATGAGATGATGATAGAGATAGCCCTTTTTCCTTTTTCAC---AAGCAAAAAATAAGCTCAAAAGCAGGCATGCTT
ACTTCCTATTTTTTCCATCCATAGATTTTTCT-GAATTATTCAACCTGCATGACGCGTCCAGAGCATGAACCAGGAAACA
TGCGTGTG-------------------------------------TTCAGTTTTTCTAGGAAGACTTTGCTAGTCCGG--
--------------------------GCTCCGCGATAATTTTGGATGTGTGCATCCCGG--GATGCAGAGGCCCGGAAGA
GTTACCCCCTTGGGTG------TAAAACCATGACCCGGAAACACGTACTCCCACAACTAATTTGACACACACACACACAC
ACACACTGACATCACTGCACCGGCC-AAAAGCA---TGACACGACAAAGAGAAAGAG------GAGAGATCTCTTTGTGT
GCGTGCTGCATCCACTAGAGATACGATGGCGCCAAATCAAGCTCA---------CCCAGCACCCTTTTGAAAGGAATTTT
AACGCAACTGATGTGCACGTCCCAGCCCCAGCACCAGCAGGCAGCAACAAGAGAAAGGAAACCACGCGA--GAGAAAAGC
AATTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTTTCTGTCTTTCTCTCTCACCAAACCTTGCCTTGCTTTCCCTCTTTTGC
TCTCCTCCCGTGGGCCGTGGCTATAAGACACGCCGAGCCAAGAACGCAACTCCATTCTAC----ATCTTTCTTTCTTTCT
CCTCCTCGTCAAACCCTCTGTGCCCTCCGTA------------GTGTTCGTATCAATCTCCAGCTC---CGGCTCCGAT-
-----GAAGGTCCGACGCGGCGGCGCCGGCTTCCCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTAGCCGTCGCTGA
CCCGCTCCACAAGAAGTCGCAGCC------------GCCACAGCCAGGAAAGCAGGCCGACAACCCCTCCTCCACCACCA
CA---ACCAT------GGCGGCCACCACACAGGGTAAGTAACTAGTCTCTGAGCATAC----ATAATTCGTATCACGATC
CGCTGC------------CACAGGCACTACATACGTAC----TAACAGCA-GCAACCAATCGGTGGTCC---A-TT----
------TCAGACAGAGGCGCCGGAGAAGAAAGCGGCGAGGACAAGGCCAAG---GCCGC---GGCGGCGTCCGGGATCGT
CACGGCGGGGGTGCAGCGGCTGCTCAAGGGAATCAAGACCTTCTTCGCGGCGTACGACAGTGAGGAAGAAGATGAA---G
AGGAGAGGGAGATCGTGATCGGGTACCCCACGGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGGATCAACAAGGTG
GGCGGCATGGGCGTGGGC---------------------------ATGGTCGGCGCCTTCTCCCTGCCATCCTCCCTCTC
CCTCCGCCAGCTCGACATCGCCATGGACCCCGGCGCCGCCACCACCACCTGCATCAACTGATCCATA----ATTCTCCAT
TGCCATGCA--------TCGTAATCTACCTCACTCAGCTCGAGCGACCAACCGCTCTGCCCAAGACTG--ACTGAGGCCC
AAGACTGTGTAGCACCCAGCCAGCCAGAGAAGCCCAAGATGGAGACGGAGGCCGACGGAGTGAGCTTTGCTGTAGACCGG
TGTGTGACAAGGCGACACTTGTGTTGTGAGAGCAGGCATGGGCATGGCTGGCAGCTGTAGATAGTGTCGATCCGGACGAG
TGCCGTCGTCGCCGGAGAAGAAGAGAATATATTCGTGGCTGTACGTACTCGCCGTGACACCCTCGATCCTGCAACAGTGG
GGTCACC-------AGCTATCCTTGCTGA------TGCTGCACAATTATGATCTGGTTGGTGAGACGCACACAAAATCTG
CTGCTG---CTTCTTGTTCCCAGAGTTGGCACGTTACCTTTGACCTGT--------------------------------
----GCTTGTGTATATAACTCTCCTTTTAGTCTTAGATAGATGATGAATTGATGATGGTGTTTTGGTGAGGTTTGTAACA
AATTGGTGTTCGCGTCGCCGCATGGTTCTCCGTCC-ATTCACAAATATAAGATGTTTTGGATATTTCAATATAAACTATA
TACGAACTGAAATGAGTGAACAAACATACTATCTTCGGAACCCTTTTTGTGACTAAATTTATATTAAGAAATACCAACAT
CAACAGTAGCAAATATAAATACTATGAAACCACATTTCATAATGAATCTAACAATATTGATTTGACATCGTGAATGTTAT
TACTTTTTTTTATAGAAGTTGGGTCAAAGTATAGATAG------------------------------------------
--------------------------------------------------------------------------------
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-------------TTTGACTTCGGATAAAACTTATATGCAAATTAAAAAGGACCCGAGGGAG------------------
--------------------------------------------------------------------------------
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----------------------------------------TAAGTTGAGGTCTGGCAAAGTGTGGCAAGTTGTGGCTTGA
AACCAAACAGCCCCTAAGTCACCAACGCCAAGAAGTATCGAGCACTGCAAACCGTCTGATTGGAGATGATCATTGACACG
GCAGTTGGCCACTAAGAAACGGTAAGTGCGTGCGAGTGAAG
>chr5B_3
--ATATGCAGGTGGTTGGGCTGGCCACTCGTTAGGCTCACCAAAATCCTCCCCATTATCAAATTGCTGCTGTAGATTTCA
TTTGGATGAGATGATGATCGAGGTTGCCCTTTTTCATTATTCACCACAAGCAAAAAATAAGGTCAAAAGCAGGCAGGCTT
ATTTCCTC---TTACCATCCATAGATTTTTTTCGAATTCTTTAACCTGCATGACGCGTCCAGCGCATGAACGCGGGACAT
GCCCTGTTACTCTTCCAGAAACCAACCCAACCCAAAGATGCATGCTTCAATTCTTCTACGAAGACTCTGTTAGTCCGGGC
TCCGCGATAATGCTATCGGCTAGTCCGCTCCGCGATAATTTTGGATGTGCACCCTCGATCAGATGCAGAGG-CCGGAAGA
GTTCCCCCCTTGGAAGTAAAAATAAAACCATGACCCGGAAAAACTTACTCCCACA----------CACACGCACGCACGC
ACTAATTCACATCACTGCACCCGCCCAAAAGCATGGTGACACGACAAAGAGAAAAGAGGAGAGGAGAAATCGC------T
GTGTGCTGCATCCACTACCCAAATGATGGCGCCAAATCCTAATCACCCA----------ACCCCTTTTGAAAGGAATTTT
AACGCAATTGATGCGCACGTCCCAGCCCCGGCACCAGCAAGT-------AGAGAAAGGCAACCCCCATAT---AAAAATC
AATTAGTCCACGGAGA-----TCATTGCTGATTCATCTCCAATTCTCCATGACACCGTACTACCAAAATCAACCTAT---
-TTGATGATGCCCTGCCTCCATCGCTCTCCCTCTGCTTCCTGTCTTT------CT-------------------------
---------------------------CTGCTTTCTGTCTCTTTCTCTCGCCAAACCTTGCGTTGCTTTCCTT----TGC
TCTCCTCCCGTGGT-------TATTAGACACGCCGACCCAAGAAGGCAACACCATTCTGTCTCACCTTG-----------
------------------------CACGGTA------------CTGTCCGTCGTCGCCTCCAGCTCACTCGGCTCCGATG
AAGGAGAAGGACCGCCGCAGCGGCGCCAGCTTCCCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTCGCCGTTGCCGA
CCCGCTCGACAAGAAGCCGCCGCT------------GCCGCAGC------GGCTGGCCGACAACCCCTCCTCCTCCACCA
ACACGG---C------GGCGGCCACCACACAGGGTAAGTAACTAGTCTCTGCGCATACCTAATTAATTCGTATCACGATG
-GATAC------------CACAGGCAGTACATA--TACGTACTAACAGCA-GCAACCGATCGGTTGTCC---ATTT----
------TCAGAGAGAGGCGCCGGAGAAGAAAGCAGCGAGGAGAAGGCCAAG---GCCGC---GGCGGCATCGGGGATCGT
CTCGGCGGGGGTCCAGCGACTGCTCAAGGGGATCAAGACCTTCTTCGCGGCGTACGACGGCGGAGAAGAAGATGAA---G
AGGAGCGGGAGATCGTGATCGGGTACCCCACCGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGGATCAACAAGGTG
GGCGGCATGGGCGTGGGCG---------------------TGGGCATGGCCGGCGCCTTCTCGCTGCCATCCTCCCTCTC
CCTCCGCCAGCTCGAGATCGCCATGGACCCCGGCGCCGCCGCCACCACCTGCATCAACTGATCCATATATAATTCTCCAT
TTCCATGCA--------TCATAATCCACCTCACTCGACTCGAGCGAGCAACCGCTCTGCCCAAGACTGTGACTGAGGTCG
AAGACTGTGTAGCACCCAGCCAGCCAGAGAAGCCCAAGATGGAGACGGAGGCCG--------------------------
--------------------------------------------------GCAGCTGTAGAGAGTGTCGAACCGGACGAG
TGCCGTCGTCGCCGGCGAAGAAGAGAATATATTCGTCTCTGTCTGTCATCGCGGTGACACCGCCGATGCTGCAACAGTGG
GGTCACCGGTCACCAGCTATCCTTGCTGCTGCTGCG------CAATTATGATCTGGTTGGTGAGACGCACACACAATCTG
CTGCTG---CTTCTTGCTCCCAGAGTTGGCATGTTACCTT-GACCTGTGTGTGTGTGTGTGTGTTTTGCGAAGGAGTCAA
TTCGGCTTGTGTATATAACTCTCCTTTTAGTCTTAAATAGATGATGAACTGCTGGCGGTGTTTTGCTAAGGTTTGTGACA
AAT-GGTGTTCCTGTCGCTGCATGGCACTCCCTCCTATTCATAAATATAAGATGTTTTAGATATTTTAATATAAATTATA
TACAGACTGATATGAGTGAACAAACATACTATAATGTGTCTATATACATTGGTTTACGAATATGTTAGACCATCTTATAT
TTTTGAATGGAGGGTGTAATCATTCGCAAAAAAAAGAATGGAGGGTGTAAGAGGTATCGTCGGATGTTAAT-----TTTT
TCTTTGTTTTTTTTGAAATGGAGGCAAAATCTTTCTATCATCCATTAGTTAAGAGAGAAATAGAGTTTTTCGTTTACAAA
TACGGTGGCCAAGTCCCCGCAAAAAAAAAACGATGGCCAAGCATCCTGCTCTGGCACCGCGTCCGCTCCGGTGCTGGTGC
CATCAGACGACGATGATCCGATCGTCCACGACATCAACCAATGATACCTCGCCACGAAGGACTTGTATGCGGGCCGCTGC
CATCGGGTCAATGCCAAGCTTCTGGCATAGGCACCGAGGCTTCGCACGACATCGTTGAGAACAAGGACGAAGATGAAGCC
TGTGCCGGTGTCGTCGCCAAGGAGCAAGCCCATGCCGTTCAGTCACTCGCCGACCTACATGACCTGGATGACCCCATGCA
TTCTGACTTCTCCTCTAACTCCGGCAACAACTCATATGCCATCTTCAACATCTCTACTGCGGCGGAGATGCTTAGGGGAA
GGCAAACACCGGTGACGCTTTTCACCTAGCCTAGTCCTAGTACAAATTTATGAACTATGTTGTTGTCGTTCTAGTATATA
TGAACTATGTTGAACGTATGTTATCAAATGTATGTGATCGATGTTGCATGGTTTTGTGTGGATGTGGGACAGGACAAATG
GGGCACCATAGCATGGTGGGAGAAATGAGAATCGACCCCCTATTGTGCGCAGACATGTCCAGGGACAATGGGGAGGGGGA
GGGAGGATTTGACCAAGACACAACCTTGGCCAATAATAGGGTTTAAGATTCTTTTAGAGCAAATAAAAGAAGGTGACTTA
TTGTGCCGTTGTTGGGCGGAAAACATCAGAATTGTTGATCACGACAGCGTGGTTAAGACCCTGTCTGGATTGCGGCTATT
TTTGCCACACATTGCCATACTATTTTGCCACACTTTTCTTTCTTGAGTTGCACAAATTCTTGGCCACACTTTCGCTTGCC
CTAGAGAATCTTGCCATACTTTTCGTATCTATGACATATGGGGCTTATTGCTCATAAAAGAAAATTTCTTCTCTTAGTTG
TGGCAAGAAACAAAAACCCACCTAACTTGTCAAACTTGTCTAAGTTGAGGTGTGACAAAG----------TGTGGCTTGA
AACCAAACAGCCCCTAAGTCTCCGACGTGAAGAAGTATCGAGCACCGCAAACCGCCCGATTGGAGATGAACGTTGACACG
GCAGTTCGCCACCGAGAAACGGTAAGTGAGTGTGAGCGAAG
>chr5D_169
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TTCCCGTCCATAGATTTTTCT-GAATTATTCAACCTGCATGCGCGGCATGACAAGTCCAGACTAAAGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGCC-AAAAGCA---TGACACGACAAGAAGAGCAAAGGAGATATCT-----C------T
GTGTGCTGCATCCACTAGCGAAACGATGGCGCCAAATCGAGCTCACCCAGCATGCCC--GACCCTTTTGGAAGGAATTTT
AACGCAACTGATGTGCACGTCCCAGCCCCATCACCAGCAGGCAGCAACAAGAGAAAGGAAACACACCATGGGGAAAAAGC
AATTAGTCCACGAAGA-----TCGTCCCTGATTGATCT--------CCACGATACCATGCTACCAAAACTAACCTAT---
-TTGATGATGCCCTGTCTCCCTCC--CTCTCTCTGCTTTCTGTCTCT------CT-------------------------
---------------------------CTC---TCTCTCTCTCTCTCTCACCAAACCTTGCCATGCTTTCCCT----TGT
TCCCCGTGCAC------CGCCTATAAGACACGCCGAGCCAAGAACGCAACTCAATTCTGC----A----TCTTTCTTTCT
CCTCCTCGTCAAACCCTCTGTGCCCTCCGTA------------GTGTTCGCATCAATCTCCAGCTC---CGGCTCCGAT-
-----GAAGGACCGCCGCGGCGGCGCCGGCTTCCCCTTCTCCATCGGCTGCATGTCGCAGTCTGCCGTAGCCGTCGCCGA
CCCGCTCCACAAGAAGCCGCAGCC------------GCCACAGCCAGCAAAGCAGGCCGACAACCCCTCCTCCTCCTCCA
CCACCACCACAACCATGGCGGCCACCACACTGGGTAAGTAACTAGTCTCTGAGCATAC----ATAATTCGTATCACGATC
CGATGC------------CACAGGCACTACATACGTAA----TAACAGCA-GCAACCAATCGGTGGTCC---A-TT----
------TCAGACAGAGGCGCCGGAGAAGAAAGCAGCGAGGAGAAGACGAGAACCGCGGC---GGCGGCGTCAGGGGTCCT
CACGGCGGGGGTGCAGCGGCTGCTCAGGGGAATCAAGACCTTCTTCGCGGCGTACGACGGCGAGGAGGAGGACGACGACG
AGGAGCGGGAGATCGTGATCGGGTACCCCACGGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGGATCAACAAGGT-
--------------GGGCG---------------------TGGGCATGGCCGGCGCCTTCTCGCTGCCATCCTCCCTCTC
CCTCCGCCAGCTCGAGATCGCCATGGACCCCGGCGCCGCAACCACCGCCTGCATCAACTGATCCATATATAATTCTCCAT
TGCCATGCATCATAAATTCATAATCCACCTCACTCTGCTCGAGCGAGCAACCG-------------TG--AGTGAGGTCC
AAGACTGTGTAGCACCCAGCCAGCCAGAGAAGCCCAAGATGGAGACGGAGGCCG--------------------------
--------------------------------------------------GCAGCTGTAGAGAGTGTCGTGCTGCACTGC
CTC-----------GAGAAGAAGAGAATATATTCGTGTCTGTCCGTCGTCGCCGTGACACCGCCGATCCTGCAACAGTGG
GGTCACC-------AACTATCCTTGCTGCTGCTGCTGCTGCACAGTTATGATCTGGTTGGTGAGACGCACACACAATCTG
CTGCTGCTTCTTCTTGTTCCCAGAGTTGGCACGTTACATT-GACCTGT--------------------------------
----GCTTGTGTATATAACTCTCCTTT-AGTCTTACATAGATGATGACTTGATGATGGTGTTTTGCTGAGGTTTGTAACA
AAT-GGTGTTCGCGTCGCTGCATGGTACTCCCTCC-GTTCACAAATATAATATGTTTTGTATATTTCAATATAAACTATA
TACAGACACAAATGAGTGAACAAATATACTA-------------------------------------------------
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-----------------------------------------
>chr5D_414
--------------------------------------------------------------------------------
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----------ATCACTGCACCCGCCCAAAAGGA---TGACACGAAAAAGAGGGAGGAGGAGGAGAGACATCTCTTTGTGT
GCGTGCTGCATCCACTAGCGAAATGATGGCACCAAATCAAGCTCA---------CCC--CACCCTTTTGAAAGGAATTTT
AACGCAATTGATGTGCACGTCGCAGCCCCGGCACCAGCAACAA--------AAAAAGGAAACACACCATGGGAAAAAAGC
AATTAGTCCACGAAGA-----TCGTTCCTGATTGATCT--------CCATGATACCATGCTACCAAAACTAACCTCC---
-ATGATGATACCCTGTCTCCCTC-----------------------TTCCTCGCT-------------------------
---------------------------CAGCTTTCTGTCTTTCTCTCTCACCAAACCTTGCCCTGCTTTCCTC----TGC
TCCCCGTGCAC------TGGGTATAAGACACGCCGGGCCAAGAACGCAACACCATTCTGCCTGCA----TCTTTCTT---
CC---------AACCCTCTCTACCCTCCGTCAGAACCTCCGTAGTCTCAGTGTCAATCGT---CTC---TGGCTCCGAT-
-----GAAGGACCGCCGCAGCGGCGCCGGCTTCTCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTCGCCGTCGCCGA
ACCGCTCGACAAGAAGCCACCAGCACCGGCGCCGCAGCCGCAGC------AGGAGGCCGACACCCCCTCCTCCTCCACCA
CG---ACCAC------GGCGGCCACCGCACAGGGTATGTACTTCCTGAT--------C----ACAATTCATATGAAGATC
-CATGC------------CACCGGCACTCCACA--TAC----TAACAGCAAGCACAACA-------TCC---A-TT----
------TCAGAGAGAGGCGCCGGAGAAGAAAGCAGCGAGGACAAGGCCAGAACCGCGGC---GGCGGCGTCAGGGGTCGT
CACGGCGGGGGTGCAGCGGCTGCTCAAGGGAATCAAGACCTTCTTCGCGGCCTACGACGGCGAGGAGGACGAGGAGGAGG
AGGATAGGGAGATCGTGATCGGGTACCCCACCGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGCCTCAACAAGGT-
--------------GGGCGGC------ATGGGCGTGGGCATGGGCATGGTCGGCGCCTTCTCCCAGCCCTCCTCCCTCTC
CCTCCGCCAGCTCGAGATCGCCATGGACCCCGGCGCCGTCGCCACCACCTGCATCAACTGACCAATCTCTGCTG--CCAT
TGCCATGC------------------------------------------------------------------------
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>chr5B_465
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-----------------------------------------------------------------------TCTTTGTGT
GCGTGCTGCATCCACTAGCGAAATGATGGCGCCAAATCCAAATCA---------TCC--ACCCCTTTTGAAAGGAATTTT
AACGTAATTGATGTGCACGTCCCAGCCCCAGCACCAGCAGGCAGCAACAAGAAAAAAGAAACCCCCAT--GGGAAAAAGC
AATTAGTCCACACGAAGATCGTCGTTCCTGATTGATCT--------CCATGATACCATGCTACCAAAATTAACCTATTTG
ATTGATGATGCCCTGTCTCCGTC-----------------------T------CT-------------------------
---------------------------CTGCTTTCTGTCTTTCTCTCTCACCAAACTCTGC-------------------
TCCGCGTGCAC------TGCCTATAAGACACGCCGGGCCAAGAACGCAACACCATTCTGCCTGCA----TCTTTCTT---
TCTCCTTATCTCATCATCTGTACCCTCCGTA------------GTGTTCGTATCAATCTCCAGCTC---CGGCTCCGAT-
-----GAAGGACCGACGCGGCGGCGCTGGATTCCCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTGGCCGTCGCCGA
CCCGCTCGGTAAGAAGCCACCAGC------------ACCGGCGCCGCAGCCGCAGGCCGACAACCCTTCTTCCTCCACCA
CGACGA------------CGGCCACCGCACAGGGTATGTACTTCCTGAT--------C----GCAATTCATACGGAGATC
-CATGC------------CAC-----------A--TAC----TAACAGCAAGCAGAACA-------TCC---A-TT----
------TCAGAGAGAGGCGCCGGAGAAGAAAGCAGCGAGGACAAGGCGAGAACCGCGGCGGCGGCGGCGGCAGGGACCGT
CACGGCCGGGGTGCAGCGGCTGCTCAGGGGAATCAAGACCTTCTTCGCGGCGTACGACGTCGATGAAGAGGAGGACGAGG
AGGAGCAGGAGATCGTGATCGGGTACCCCACCGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGCATCAACAAGGT-
--------------GGGCGGC------ATGGGCGTGGGCGTGGGCATGGCCGGCGCCTTCTCCCTGCCATCCTCCCTCTC
CCTCCGCCAGCTCGAGACCGCCATGGACCCCGGCGCCGCAACCACCACCTGCATCAACTGACCA----------------
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>chr4A_877
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------CCGTGGCTATAAGACACGCCGAGCCAAGAACAGAACACCATTCTGC----A----TCTTTCTT---
CCTCCACGTCTCATCCTCTGTACCCTCCGTCAGAACCTCCGTTCTCTTACTATCAATCGT---CTC---CGGCTCCGAT-
-----GAAGGACCGCCGCGGCGGCGCCGGCTTCCCCTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTAGCTGTTGCCGA
CCCGCTCGACAAGAAGCCGCAGGC------------GCCAGCGCCA---CAGCAGGCTGACACCCCCTCCTCCTCATCCA
CCAACACCAC------GGCGGCCACCGTACAGGGTATGTACTTCCTCAT--------C----ACAATTCATATGAAGGTC
-CATGCCACAGGTAC-TGCAC-----------A--TAC----TAACAGCAAGCAGAACACCTACCGGGGTCTA-TT----
------TCAGAGAGAGGCGCCGGAGAAGAAAGCAGCGAGGACAAGGCGAGAACCACGGC---GGCGGCGTCAGGGGTCGT
CACGGCGGGGGTGCAGCGGCTGCTCAGAGGGATCAAGACCTTCTTCGCGATGTACGACGGCGAGGAGGAGGACGAGGAGG
AGGATAGGGAGATCGTGATCGGGTACCCCACCGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGGATCAACAAGGT-
--------------GGGCGGC------A------------------TGGTCGGCGCCTTCTCGCTGCCCTCCTCCCTCTC
CCTCCGCCAGCTCGAGATCGCCATGGACCCCGGCGCCGCCACCACCACCTGCATCAACTGACCAAACTCTCCTG--CCAT
TGCCATGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>chr4A_962
CCTCC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------TTGTCTTCGTATCAATCTCCAGCTA---AGGCTCCGAT-
-----GAAGGACC---------GCGCCGGCTTCCACTTCTCCATCGGCTGCATGTCGCAGTCCGCCGTCGCCGTCGCCGA
CCCGCTCCGCAAGAAGCCACCAGC------------ACCGGCGCCGCAGCAGCAGGCCGATAACCCCTCCTCCTCCTCCA
TCACCAC---------------------ACAGGGTAAGTGACCAGTCTCGTACCAC-----AATAATTCATACCACGATC
-GATGCCACAGGTACGTGCGC-----------A--TAC----TAACAGCA-GCAGCACATCTATCGCTGGCCCATTTCAT
TGAGACTCAGACAGAGCACCCCGAGAGGAAGGGACCGGCGGTGATGAGAAGGCAAAAGA------------AGGGATCGT
CGCAGCAGGGGTGCAGCGGCTGCTCAAGGGGATCAAGACCTTCTTCGCGGCGTACGACGGCGAGGAAGAAGAAGAGGAGG
AGGAGCGGGAGATCGTGATCGGGTACCCCACGGACGTGCAGCACGTCGGGCACATCGGCTGGGACGGTCTCAACAAGGT-
--------------GGGCGGCATGGGCA------------------TGGTCGGCGCCTTCTCTGTGCCCTCCTCCCTCCC
TCTCCGCCAGCTCGAGATCGCCATGGACCCCGGCGCCGCAACCACCACCTGCACCAACTGATCCCTA----ATTCTCCAT
TGC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>SNPs
SS-----------------S--------------S---S---------SS------------------S-----------
------------------S---S-S----------S--S----------------------S-------------S----
-S-----SSSS--S------------------------------------------------S--------SS----SSS
SS-S---S-----------------------------------------S--S-----S-------S--S----------
-------------------------------------------------SS-SSS-SSS------------S--------
---S---------SS--------------------------S--S----------SSSSSSSSSS-----S---S---S-
--SS-S-S------------------------------------------------S----------S------------
------------------S--S-----------------------------------SS---------------------
---------------------------------------------------------------S-S-S-----S------
-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------SSSS---
-------------S--------------------------------------------S------SS-S-----------
--------------------------------------------------------------------------------
----------S------------------------------------------------------------------S--
----------------S------------------------------S-------------------------S------
-S-------S----------------------------------------------------------------------
--S-----------------------------------------------------------------------------
---------------------------------S-------------------------------------S--------
----------------------------------------------------------S-S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-------------------S-----S---------S----------S------------------------------S--
------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------S---------
-------------------------------------S----S---SS-------------SS-----------------
----------------------------S--------------------------------------------S------
----------------------------------------S---------------------------------------
-----------------------------------S-----------------------------S--------------
---S--------------S-------S----S------------------------------------------------
---SS---------------------------SS-SS-SSSSSS-SSSS--SS-S-SSSSSSSS-S---SSSS-SS-S--
SSSSSSSS-S-SSSSSS---SS-SS-S--SS-S-SSSSSSS-S-SSSSS-SSSS---S-SSSSSSSS-SS-SSSSS--S-
-SS--S-----S-S---S-S-S-S----S-S-SSS--S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-S---S---SS-S----S------S-SS-SS--SSSSS-SSSS-SS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--S-----SSSSSSSSSS----------
--------------------S--S---SS----------------S--------S-S------------S-S--------
------S-----SS--------------S---S---S----
>forward_955
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------CCTTGCCTTGCTTTCCCTCT-----
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-----------------------------------------
>reverse_1982
--------------------------------------------------------------------------------
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-------------------------------------------------------------GAGCTTTGCTGTAGACCGG
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
