>input_sequence_74349
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATGGCGCCCTCCTCCTCGACCTCCACCACGGCGTCGGCGGCGGCGGACGAGCGGG
ACCGCAAGCGCAAGCGGGGCGCCGTTGGCGAGGCGGGGACGGAGGCGGAGGCGGAGAGGACGCCCAAGTGGCGGACGCGG
CGGGAGCACGAGATCTACTCCACCAGGCTGCTCGACGCGCTCCGCCTCGTGCGCGCCGGGGGCGGCGTCGCCCACTCCCC
GTCCCCGGCACGCCAGGTGCGCGAAGCGGCCGACCGCGCGCTCGCCGTCGCCGCCCGCGGCCGCTCCCGCTGGAGCCGCG
CCATCCTCGCCTCTCGCCGCGCTCACCGCGTGCACCGCGTGCGCCTCCACGCTCCGGCACCATCCCCTGCACCTGCTCTG
CCACGGCGCGCTTCGCCGGGCGCGTCCTCCTCCGGCTCGACCACCTCCTCCTCCGCGCCGGCGCTGGCGAGGAAGGCGAA
GGCGCTGGGGCGGCTGGTGCCGGGGTGCCGGAAGCTGCCGTTCCCGGCGCTCCTGTCCGAGGCGTCCGACTACATCGCCG
CGCTGGAGATGCAGGTGCGCGCCATGGCGGCGCTCGCGCAGGCTCTCTCCGCCGTCTCCCCGCCGCCGTGA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr2B_1_TraesCS2B01G111900
GATTTTGGTTCCTTTTGACCTTCTTACACTAGCTAGAGTATT-------ATTACCTTTTGGTGGAAAGCGAGACCTTTTT
TTTT---TCTCTGCGGTGGAGCGTTCACTGGCGTACGTATATGCCGGCAGTACTGTATACCAGCACGGTATGTAC-----
AGGTGCGGCATGATGGGACGATAC-GTAGAGCGGAG---GTAGGTGGCGTAGCATAGCATAGCACAGCAGGGGCAGAATG
TGCGTGCGTGCGTGCGCGTGCGTGCCTACACGGTGGCGCATGCGCATGTGAGCACCCCTGGCACCATGTTAGCAGCGCCC
ATGAGGGGCCGAACATGGCATGTAGGAAAGCTATGCCTCTGCCTCATGG----CGCCTAATCATGCCCACCGCCCCGCTG
GCCCGGCTCACTCACTCGCTCCACCCCTCGCCCGCTCGCTCACGTACGGCGCTCTGCCGTCACCACCCCGCCCCACCGGC
GACGAACACCACGGCGAAACCCCATCAACGGCACGGCCAGTAGCCTTTGTCCTTGCTTGGCAGCACGAGAACAATTGAAA
CGAAACGAGATGGACATGTACACGTCGTCTGCAGGCGTCCATGGGCTGATGATCTACATCTACATGCAGCGCCTACGGTC
GTTTACGTACGTGGGG-TGGTGGCCGGTGACGGTGTGTGGATTAATTTGGTGGAGACGAGGCCACGTAGGCCGTTGATTT
CTATCGCCCATGCGAGGACAAGAAAACAACAAAACAAATGGGAG------------------------------------
----CAGAGTACATCCATCCAGTGATAAAAACCACCGGAATCTTTCTTGCTCGCAAGTTAACTCCGTCCCTCACTCCGCT
TTATATATATCCCGGCAGCGGCAGCTCC-CTCCCTCCCACTCATCCCACCCAGCCCCTGCATCTGACTTGCAAAGCCATC
GTCCATCGAGACCAGAGCGCCAGCCCACGACTAGTGCGCAGCGCGCGCGCAACAACAGAGCAAGCCAGCCGCCCCAGCTC
GCGCTCTCTCCCCCGGCCGGCCACGATGGCGCCCTCCTCCTCGACCTCCACCACGGCGTCGGCGGCGGCGGACGAGCGGG
ACCGCAAGCGCAAGCGGGGCGCCGTTGGCGAGGCGGGGACGGAGGCGGAGGCGGAGAGGACGCCCAAGTGGCGGACGCGG
CGGGAGCACGAGATCTACTCCACCAGGCTGCTCGACGCGCTCCGCCTCGTGCGCGCCGGGGGCGGCGTCGCCCACTCCCC
GTCCCCGGCACGCCAGGTGCGCGAAGCGGCCGACCGCGCGCTCGCCGTCGCCGCCCGCGGCCGCTCCCGCTGGAGCCGCG
CCATCCTCGCCTCTCGCCGCGCTCACCGCGTGCACCGCGTGCGCCTCCACGCTCCGGCACCATCCCCTGCACCTGCTCTG
CCACGGCGCGCTTCGCCGGGCGCGTCCTCCTCCGGCTCGACCACCTCCTCCTCCGCGCCGGCGCTGGCGAGGAAGGCGAA
GGCGCTGGGGCGGCTGGTGCCGGGGTGCCGGAAGCTGCCGTTCCCGGCGCTCCTGTCCGAGGCGTCCGACTACATCGCCG
CGCTGGAGATGCAGGTGCGCGCCATGGCGGCGCTCGCGCAGGCTCTCTCCGCCGTCTCCCCGCCGCCGTGATCCGTCCAC
CCATCCATCC--------GGCCGCCTCAACCCCAACATCCCCCGCGAATTGCCC-----------CGCGCGTCGGCGCAT
GTACATTTTCCTCCCCGTGCCGTGCCGCTCCAGTGTGTGACGATGAATCGACGCCACGCCACGCCACGCCGGCGATTGTC
AACCCGGCCGGCCGCGTGCATGCTAG------GAAGAAGAAGAAGAAACAGTAGCCGCTCATTTGTA----GATTCTTGT
TAGT------GTTTTGGTTTGGGGGTGTGTCTGCTAAGCTAAATCCGTAAATGCATGAGAGAGATTTTCAGTACTATATT
TCCGGAGTGTTGTGTTCTCATCAGCAAGCACG----AGATCGCCGTTATTTTTGACAA-TGTTGGTGTCAGACTGTCAGT
GCTTTGGTTTGACAAGCAAAGTGCAATGT-----TAATTAATTTATTTATTTT---TTGTCAGAAAGACAAGTGCAACGT
TAATCT-----------TTCGCAAGATTTTTTTAATCTTTTCCCTTGACCTAATCGAGACGAGCTT--------------
-TGTACGGT----GGCCGGCCGCCCGTAACGACGAACGGGCCACGCGAT---AATTCCCCATGTGGGAGGATTAAATAAC
ACGTGACACCTCTGACCGGCCGGGCCCGGCGGCAGGCACTCATGGCGCGGGGCCGAGGCCGCCTGTCAGGTGTCGCGCGC
TCTTCTTTTTTTTGCAGGCACTCTTTTTTTTGTGCAGTAAACTT---------------GTAGAAATACAGACGTTCGAT
GTAGAGATACGTTGAGGTATACCGCTCGGCTACGCGACAAGGGCAGCTCGCCTCCGTCCGCCCGCGGGCCCACAACGTGC
GTCGGGCGGGCCCGCTGGGGCAGCCGCACATGCGGCGTGGTGGCTTCGCTGTCGCGCGGGTCCCC-CGGGGCCTCTCCAC
GGCCCACCCG-CAGTGCTATGGCTGGCTGCGCCTCACGTGGCCCGTACGCGTGGTAGGGATGGACGGCCCTGATCCACGT
CGCCGTGCGATTGG-CGCGCGCATACGACGACA----TGGCTAGCTTCCCGCCG
>chr2D_3
--TTTTCGTTCCTTTTGACCTTATTACACTAGGTAGAGTATTATACTGTATTACCTTTTGGCGGAAAGTGCGACTTTTCT
CTCTCTCTCTCTGCGGTGGAGCGTTCACTGGCGTACGTATAC----------------ACCAGCACCGTATGTACAGCGT
AGGTACCGCATGATGGGACGATAAAGTACAGCGGAGGTAGTAGGTGGCGTAGCGTAGCACAGCACCGCAGGGGCAGAATG
TGCGT----------GCGTGCGTGCCTACACGGTGGCGCATGCGCATGTGAGCACCCCTGGCACCATGTTAGCAGCGCCC
ATGAGGGGCCGAACATGGCATGTAGGAAAGCTATGCCTCATGC----------CGCCTAATCATGCCCACCGCCCCGCTG
GCCCGGCTCACTC------------CCTCCCTCCCTCGCTCACGTACGACCCTCCGCCGTCACC------CCCCACCGGC
GGAGAGCACCACGGCAAAACCCCATCAACGTACGCCCCAGTACGCCGC-------------------AGAACAATTAAAA
CGAAACGAGATGGAAATGCGCACGTCGCCCGCGTCGTAGGCC--------------GGTCTACATGCAGCGCCTACGGTC
GTTTACGTACGTGGGGGTGGTGGCCGGTGACCGTGCGTGGATTAGTCTGGTGGAGGCGAGGCCACGTAGGCCGTTGATTT
CTCTCGCCCATGCGAGGACAAGAAAACAACAAAACAAAACAAATGGGAGCAGAGTACATCCATCCAGTGATAGATAAAAA
CCACCGGC--------------------------CCGGAATCTTGCTCGCTCGCGAGTTAACTCCGTCCCTCGCCTCGCT
TTATATATATCCCGGCAGCGGCAGCGCAGCTCCATCCCACTCATCCCACCCAGCCCCTGCATGTGACTCGCGAAACCGTC
GTCCATCCAGACGGGAGCGC------------------CAGCGCGCGCGCAACAACAGAGCCAACTCTCCTCTCAGCTCG
CG-----CTCCCCCGGCAAGCCACGATGGCGCCCTCCTCC---------ACCACGGCGTCGGCGGCGGCGGACGAGAGGG
ACCGCAAGCGCAAGCGCGGGGCCGGCGGCGAGGCGGGGACGGAGGCCGACGCGGAGAGGGCGCCCAAGTGGCGGACGCGG
CGGGAGCACGAGATCTACTCCACCAGGCTGCTCGACGCGCTGCGCCTCGTGCGCGCCGGGGCTGGCGTCGCCCCGTCCCC
GTCCCCGGCGCGCCAGGTGCGCGAGGCGGCCGACCGCGCGCTCGCCGTCGCCGCCCGCGGCCGCTCCCGCTGGAGCCGCG
CCATCCTCGCCTCTCGCCGCGCTCACCGCGTGCACCGAGTGCGCCTCCACGCTCCGGCCCCTGCGCCGGCGCCTGCTCTA
ACACGGCCCGCTTCACCCGGCGCGTCCTCCTCCGGCTCGACCTCGGCACAGGCACAGA---CGCTGGCGAGGAAGGCGAA
GACGCTGGGGCGGCTGGTGCCGGGGTGCAGGAAGCTGCCGTTCCCGGCGCTGCTGTCCGAGGCGTCCGACTACATCGCCG
CGCTGGAGATGCAGGTGCGCGCCATGGCCGCGCTCGCGCAGGCGCTCTCCGCCGTCGCCCCGCCGCCGTGATCCATC---
-----CATCC--------GGCCGCCACAACCCCAAGATCCCCCGCGAATTGCCTCGCCTCAGCGACGCGCGTCGGCGCAT
GTACATTTTCCTCCCCGTGCCGTGCCGCTCCAGTGTGTGACGACGAATCGACGACACGCCACGCCACGCCGGCGATTGTC
AACCCGGCCGGCCGCGTGCATGCTAGGAAGAAGAAGAAGAAGAAGAAACAGTAGCCGTTCATTTGTA----GATTCTTGT
TAGCGTTTTGGTTTTGGTTTGGGTGTGTGTCCGCTAAGCTAAATCCGTAAATGCACGAGAGAGATTTCCAGTACAATC-T
TTCGGAGTGATGTGTTCTCATCAGCAAGCACGTACGAGATCGCCGTTTTCTTTGACAA-TGTTGGTGC--------CAGT
GCTTTGGTTTGACAAGCAAAGTGCAATGT-----TAATTTATTTATTTATTTC---TTGTCAGAAGAACAAGTGCGATGT
TAA--ATCTATGACAGGTTCACGAGATTTGTTTAATCTTTTCCCTTGACCTAATCGAGACGAACGGGATCGAGCTTTGTA
CTGTACGGT----GGCCGGCCGCCCGTAACGACGAACGGGCGACGCGAT---AATTCCCCATGTGGGAGGATTAAATAAC
ACGTGACCCCTCTGCGCGGCGGGGCCCGGAGGCAGGCACACATGGGGCGGGCCGAGGCCG-----------GGCCCGCGC
TTTTTTTTTGTCTGA----------------GTGCAGTAAACTTGTACTGTACATTTCCGTAGAAATACAGAGGTTCGAT
GTAGAGATACGTTGAGGTATACCGCTGGGCTACGCGACAAGCGCAGCTCGCC----------CGCGGGCCCACAACGTGC
GCCCGGCGGGCCCGCTGGGGCAGCCGCACATGCGGCGTGGTGGCTTCGCTGTCGCGCGGGTCCCC-TGGGGCCTATCCAT
GGCCCACCGGCCAGTGCTGTGGATGGTTGCGCCTCACGTGGCCCGTACGCGTGGTAGGGATGGACGGCCCTGATCCATGT
CGCCGTGCGATTGG-CGCGCGCATACGACGACATACATGGCTGGCTTCCCGCCG
>chr2A_3
--TTTTCCTTCCTTTTGACCTCCTTACACTAGCCAGATTAT-------TATTACCTTTTGGCAGAAAGTGTGACTTTTTC
CC--CTCTCCCTACGGTGGAGCGTTCACTGGTGTACGTATAT----------------ACGGC--------------CGT
AGGTGCTGCATGATGGGACGATAC-GTACAACGGAGGTAGTAGGTGGCGTAGCATAGCACAGCACAGCAGGGGCAGAAT-
-------------GCGCGTGCGTGCCTACACGGTGGCGCATGCGCATGTGAGCACCCCTGGCACCATGTTAGCAGCGCCC
ATGAGGGGCCGAACATGGCATGTAGGAAAGCTATCCCTCATGCCTCCTCATGCCGCCTAATCATGCCCACCGCCCCGCTG
GCCCGGCTCACTC------------CCTCCCTCCCTCACGTACGGCCGGCCCTCCGCCGTCACC--CCCACCCCACCGGC
GACGAGCTCCACGGCAAAACCT----------------------------------------------------------
---------ACGGACGTGTACACGTCGCCTGCGGGCGTCCAAGGGCTGGTGATCTAGGTCTACATGCAGCGCCTACGGTC
GTTTACGTACGTGGGG-TGGTGGCCGGTGGCTGAGCGTGGATTGGTCTGGCGGAGACGAGGCCACGTAGGCCGTTGATTT
CTATCGCCCATGCGAGGACAAGAAAACAACAAAACAAATGGGAG------------------------------------
----CGGC--------------------------CCGGAATCTTGCTCGCTCGCAAGTTAACTCCGTCCCTCGCTCCGCT
TTATATATATCCCGGCAGCGGCAGCGCAGCTCCCTCCCACTCATCCT------CCTCTGCATCTGACTCGCAAAGCCGTC
GTCCATCGGCTAGCGCACC----------------GCACAGCGCGCGCGCAACAACACAGCCGGCCGGCCGCCCCAGCTC
GCTCTCTCTCC------CGGCCGCGATGGCGCCCTCCTCCTCCACCTCCACCACGGCTGCCGCGGCGGCGGACGAGAGGG
ACCGCAAGCGCAAGCGCGGGGCCGGCGGCGAGGCGGGGACGGAGGCGGAGGCGGAGAGGGCGCCCAAGTGGCGGTCGCGG
CGGGAGCACGAGATCTACTCCACCAGGCTGCTCGACGCGCTGCGCCTCGTGCGCGCCGGGGGCGGCGTAG------CCCC
GTCGCCGGCGCGCCAGGTGCGCGACGCGGCCGACCGCGCGCTCGCCGTCGCCGCCCGCGGCCGCTCCCGCTGGAGCCGCG
CCATCCTCGCCTCCCGCCGCGCACACCGCGTCCACCGCGTGCGCCTCCACGCCCCGGCACCGTCCCCTGCACCTGCCCTG
CCACATCGCGCTTCGCCGGGCGCGTCCTCCTCCGGCTCGACCTCGGCACAGGCACCA---GCGCTGGCGAGGAAGGCGAA
GGCGCTGGGGCGGCTGGTGCCGGGGTGCAGGAAGCTGCCGTTCCCAGCGCTCCTCTCCGAGGCGTCCGACTACATCGCCG
CGCTGGAGATGCAGGTGCGCGCCATGGCCGCGCTCGCGCAGGCCCTCTCCGCCGTCTCCCCGCCGCCGTGATCCATC---
-----CATCCATCCATCCGGCCGCCCCAACCCCAACACCCCCCGCGAAGTTCCCCGCCTCAGCGACGCGCGTCGGCGCAT
GTACATTTCCCTCCCCGTGCCGTGCCGCTCCAGTGTGTGACGACGAACCGACGCCACGCCACGCCACGCCGGCGATTGTC
AACCCGGCCGGCCGCGTGCATGCTAG---GAAGAAGAAGAAGAAGAAACAGTAGCCGTTCATTTGTACTTAGATTCTTGT
TAGC------GTCTTGGTTTGTGGGTGTGTCCGCTAAGCTAAATCCGTAAATGCATGAGATTTTTCC---GTACCATCTT
TCCGGAGTGTTGCCTTCTCATCAGCAAGCACAAA--AGATCGCCGTTTTCTTTGACAAATGTTGGTGC--------CAGT
GCCTTGCTTTGACAAGCAAAGTGCAATGTTAATGTAATTAATTTATTTATTTTTGTTTGTCAGAAGGACAAGTGCAATGT
TAATAATCTCTGACAAGTTCGCAAGATTTTTCAAATCTTTTCCCTTGTCCTAATCGAGACAAACGGGATCGAGCTTTGTA
CGGTGCGGTGGCCGGCCGGCCGCCCGTAACGACGAACGGGCCACGCGATGATAATTCCCCATGTGGGAGGATTAAATAAC
ACGTGACCCCTCTGCGCGGCCGGGCCCGGCGGCAGGCACACATGGCGCGGGGCCGAGGCCGCCTGTCAGGTGTCGCGCGC
GCTTTTCTCCCCAGG----------------CTCCAGTAAACCTGTAC-GTACATTTCCGTAGAAATACAGACGTTCGAT
GTAGAGATACGTTGAGGCATACCGCCGGGCTACGCGACAAGGGCAGCTCGCAGG-----------GGGCCCACAACGTGC
GCCGGGCGGGCCCGCCGGGGCAGCCGCACATGCGGCGTGGTGGCTTCGCTGTCGCGCGGGTCCCCCTGGGCCCTCTCTAC
GGCCCGCCGGCCAGTGCTATGGCCGGCTGCGCCTCACGTGGCCCGTACGCGTGGAAGGGATGGACGGCCC---------T
CGCCGTGCGATTGGTCGCGCGCATACGACGGCATACATGGCTGGCTTCCCGCCG
>SNPs
SS----S------------------------------------------------------S------S-S---S-----
S-S---------------------------------------SSSSSSSSSSSSSSSS--------S-------------
------S---------------------S------------------------------S--------------------
-----SSSSSSSS-------------------------------------------------------------------
---------------------------------------SSS-SSSSSS-------------------------------
-------------SSSSSSSSSSSS----S-S-S----------------S---S---------SS---S----------
-----S---------S--------------SSSSSS------SS-SSSSSSSSSSSSSSSSSSSSSS---------S---
---------------------------S----S--------S------S-------SS----------------------
-------------------------------S---S--------S-S---------------------------------
--------------------------------------------------------------------------------
-----S-SSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S------------------------S-------
-------------------------S-S----------------------------------------S--------S--
------------SS------SSSSSSSSSSSSSSS--S-----------------------S----S-------------
--S---------------------------------------S---------------------------------S---
----------------S--S----SS---------------------------------S--------------------
-----------------------------------------S-------------------------------SS-----
---------S--------------S-------------------------------------------------------
-------------------------------------------------------------S------------------
------------------------------------------S-SS-SSSSS-SS--SSS--------------------
----------------------------S---------------------------------------------------
----------------------------S--------------S------------------------------S--SSS
SSSSS--------------------S------------------------------------------------------
-------------------------------------------S------------------------------------
---------------------------------------------------------S----------------------
---S---------------------------S-----------------------------------S------S--S--
-----------------------------------------------S-S-----------------SSSSSSSSS----
-----------------------------------------------------------------S-----------S--
----SS--------------------------------------------------------S-SS--------------
--------------------------------------------------------------------------------
-------S------SS-----------------------S----------------------------------------
----S----S-S--SSSSSSSSSSSSSSSSS-------------------------------------------------
--------------------------S-------------------------SSSSSSSSSS------------------
-S----------------------------------------------------------------S-------------
--------S--------------------------------------------------------------------S--
------------------------------------------S-----------
>forward_131
--------------------------------------------------------------------------------
-------------------------------CGTACGTATATGCCGGCAGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_1924
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TGTTTTGGTTTGGGGGTGTG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
