>input_sequence_74343
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------------------------------------------------------ATGCCATCTTACTACGTGCCCTCGGA
TGACC------TGCCACGCGCGGAGGCCTCCGGGTCCACCGTCGCCGCCATCGCGGTCGGCGCCGGGGAGCACACGCTCA
CGGTCCAGG----GCTACTCGCGGCTCAAGACCATG---------AACGGCGGCTACCTGGAGTCCAGCGCGTTCAAGGC
GGGAGGACACGCCTGGAAGATCTGCTGCCACCTCAACGGGTCGGTCAAGGAGAACGCCGGCTTCGTCTCGGTGTTCCTCA
AGCTCGTCGGCGCCGAGGCCACCGACACCGCCGCTGAAGCTGCCGATGCCGT---------------------------C
GACAACAAGGAGAACATCGTCCACGCCGAGCTCGAGTTCACCCTGGTGCACCACCGAGGCACGCTGATAAAGTGGCCGTT
ACACTCGCTCGGCAGACGCGAGGGTCCCGCCGCCTTTCGCGAGAACGTCTCCATGGGCTACTCGCGGTTCGTGAGCGCGG
AGGACCTGAAGCGTTCTAGTTTCCTCAAGGACGACTGCTTTGCCGTCCGGTGCAAGGTCACCGTCGTCCACA------AG
TGTGCCGTCA---A---AGGGGACGCAAGGCCCCG------CGGGAAGGCATTGGCTAGGTT-CTT-----TAGTTGCAT
CCGTGGATAG----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G087400
TTTTGCTAGAACCAGAGAAAGAGAAAGCGGGGGTTGTAACCCATGTTGGCTATTGCTACTACTGGCGACGGCAATTGCTA
GAACCATTCATGGTGAAGCTGTGACCCACGGCAGAGACGACAATTTGCTGTAACCATCGTCGTTTTTTGTTACGGCTGGC
GAGGAAATTTGCTACAACCATTTCATGGCAAAGCTATGACCCGCGATGGCATCGACAACGATTTGTTACAATTGTTGTCG
GCTTTTGCTATGACCGCCGAGGAAATTTGCTACAATTATTTCATGGTGATAACCGGTCGTAGTTGTTCGTCAAAATCAGG
GAAAAGTTGCAACTGTTGACGGAGCGGAGCTTCGGCGGCGACGACGAGGATGGAGTGGAGACTTCCTGGAACGACCGACG
GTGGTGGTTGCGTAAGCATGACTAGTGGGGTGCTGCGATGGCTAGGTGCTCAAAGGACGAACGGGTGGCAAGCAGAGAGG
TGGCGTTATGCATTGGTGCTGCCGGGGCTG-----CCAGACGGGCCACCGCGTTTCACGAAGGAGTACCGATGAAGGAGC
TGTGCTGCGTGTGATGAATCTGCTTTCTCTTCTTGTGCTTGTTGTTGTGACTTTGGG------GCAGAAGGATAGGATGC
ATGGTTGGAAGGTTGGGGAGGAAAAGGGAGTCAAATCCGATGGCTGGGAGATGGCCC-TCGAACGCGCAGGGTGCGACTG
GCCGAAAGTTGGACCGGTTGATTGGCGCCTATTTACCGACCAAAACAAAAACAATCTTTTCAAAACAAAAACGATCTGAT
GAGATCAAATCGTGGCATACACGGCACGGACAAAACAAAATACTGTACGGCCGTTTGGAGTGTAATATCTCAACCAGATT
ACAACTC--TAAGCGGGCTTGGTCTCTTATACCAACCTCATGCATATATATATCGTCTCTTCCAAACCTAAACTTTCGTC
CAGTCGATTGTAGACTACAATACGTCGCGTGCGTTTTTATCAAATCTTGGAAAGATGCCATCTTACTACGTGCCCTCGGA
TGACC------TGCCACGCGCGGAGGCCTCCGGGTCCACCGTCGCCGCCATCGCGGTCGGCGCCGGGGAGCACACGCTCA
CGGTCCAGG----GCTACTCGCGGCTCAAGACCATG---------AACGGCGGCTACCTGGAGTCCAGCGCGTTCAAGGC
GGGAGGACACGCCTGGAAGATCTGCTGCCACCTCAACGGGTCGGTCAAGGAGAACGCCGGCTTCGTCTCGGTGTTCCTCA
AGCTCGTCGGCGCCGAGGCCACCGACACCGCCGCTGAAGCTGCCGATGCCGT---------------------------C
GACAACAAGGAGAACATCGTCCACGCCGAGCTCGAGTTCACCCTGGTGCACCACCGAGGCACGCTGATAAAGTGGCCGTT
ACACTCGCTCGGCAGACGCGAGGGTCCCGCCGCCTTTCGCGAGAACGTCTCCATGGGCTACTCGCGGTTCGTGAGCGCGG
AGGACCTGAAGCGTTCTAGTTTCCTCAAGGACGACTGCTTTGCCGTCCGGTGCAAGGTCACCGTCGTCCACA------AG
TGTGCCGTCA---A---AGGGGACGCAAGGCCCCG------CGGGAAGGCATTGGCTAGGTT-CTT-----TAGTTGCAT
CCGTGGATAGATCATAGATGTGCCCCGTTGGAAAAAAAATTGGCGCATTGTT-GGGAGAATT------------------
-------------------------TTTCTTTTC-TTAAGATATATCTGGATTAAATAGAGTTGAGAAAACAACTGCTCG
GACCAATGGTC----------------------------------------------TCCTCCTCGGTCTACCTCCTCTC
TCTCCCCTCGGGCGGTCTAGTCGGCGGGACCAGTGGGGACTCGCCCCTTTCATGTTTCTTAGTTCTATCAGGTCATTGTT
TTCTTTAGATTTTTGTTTCCTATTGGCATCGACGAGGTGGTGATGGCGACGGCACATTGAAATAAAGTCTCTCCGGCTTT
TCCTTGCCGCGGCGAGGTCAGATCTAAGCGTCAACGACGGGCATGTGGCAGTTCGTGCGT---CAATCAAGGAAAGCAGT
TGGCTGGCCCTTGGTGTGGCGCCTAAAACATCTTCTTTACATTTGTTTTGCCGGCATGATCCGGTTTCTTCAACTTTCTA
GACTGGTGATGAAGGATTACAACCCTGCGTTGCGTGGGTGATGCCTCGACCGCTGTTTGTTCATCGATTATTAGACCTCG
TTTCTAGCATCACATGGCTATTGTTGTCGTCAAAGTCTCGTATGGCTAGGGCATTTGCAGGTGTGTCTTTCCCTTACTCG
TCCGGTGCGGTTTTTATGCTCCGACGAGGGGCGTACAATCAAGAAAAGATAATAGTAATAGCAATAATTTGCCACTATTT
ATCAAGAAAAACATTTATATGTACTATATTTGTAGCACTCAGTTGCATGTTTCTCTTGGTTTAAAAATTCTATTTTATCC
TAAGCTAATTAATTAGCATAGCAGGTGTATAAGTGTAGTTACGAGGTATCCAAAGCAAGGAAAGGATGGGATGAACTCAA
CAATTTTGAAATTTGACTTGTATTTGGTCGGGAAAGGCCCATGACAACCCCAACGAATTGTTGGTTGAGATAGGCCCATG
GCAGGCCCAACGGAATGGGAACGGTTTTCCTGTCTGGGCTTTCCCCAACGGACAATGTCAGGTT
>chr2B_1
TTTTGCTAGAACCAA------AGAAAGTGGGGGTTGCAACCCTTGTTCGCTATTGCTACTAGTGGCGACGTCAATTGCTA
CAACCATTCATGGCCAAGCTGTGACCTGTGGCGGAGACAACAATTTGTTGTAACTGTCATCGGTTTTTGCTACGGCCGGC
GATGAAATTTGCTACAACCATTCCATGGCGAAGCTACAACCCACGACGATGGCG---ACGATTTGCTACAATCGTCATCG
GCTTTTGCTATGACCGCCGACCAAATTTGCTACAACAATTTCATGGCGATGGCCGATGGTAGTTGTTCGCGGAAATCGAG
GAAAAGCTACAACTGTTGACGGGGCGGAGCTTCAGTGGCAACGACGAGGATGGAGCGGAGACTTCCTGGAACGGCCGACG
GTGGTAGCTACATAAGCATGACTAGTGGGGTGTTGCGATAGCCAGGTGCTCAAACCACAAACTGGTGGCAAGCAGAGACA
GGGCGTTATGCGATGGTGCTGCCGAGCC-GCCGCCGCCGACGGGCCACCGCGTTTCGT---GGAGTACCGATGAAGGAGG
TGTGTTGCGTGTGATGACTCTGTTTTCTCTTCTTGTGCTTGTTGTTGTGACTTGGGGGCAGAAGCAGAAGGATAGGATGC
ATGGTTGGAAGGTTGGGGACGAAAAGGGAGTCAGATCCGATGGCTGGGAGATGGCCCATCGAACGCGCAGGGTGCGACCG
GCCGAAAGTTGGACCGGTTGATTGGTGCCTATTTATTGAG--AAAAAAAAACAATCTTTTCAAAACGAAAACGATCTTAT
CATATGGCGGGCATA---------CACGGACAAAACAAAATACTTTACGGCCGGTTGGAGTGC-ATATCTCAACCAGATT
ACAACTCTTTAAGCGGGCTTGGTCTCTTATACCAATCTCATGCACATATATATCGTCTCTTCCAAACCTAAACTTTTGTC
GAGTCGATTGTAGAATAGAATACGTCGCGTGCGTTTTCATCAATATTGAGAAAGATGCCATCTTACTACGTGCCCTCGGA
TGACC------TGCCACGCGCGGAGGCCTCCGGATCCACCGTCGCCGCCATCGCGGTCGGCACCGGGGAGCACACGCTCA
CGGTCCAGG----GCTACTCGCGGCTCAAGACCATG---------AACGGCGGCTACCTGGAGTCCAGCGCGTTCAAGGC
GGGAGGACACGCCTGGAAGATCCGCTGCCACCTCAACGGGTCGGTCAAGGAGAACGCCGGCTTCGTCTCGGTGTTCCTCA
AGCTCGTCGGCGCCGAGGCCACCGACACAACCGCTGAAGCTGCCGATGCCGT---------------------------C
G---ACAAGGAGAACATCGTCCATGCCGAGCTCGAGTTCGCCCTGGTGCACCACCGTGGCACGCTGATAAAGTGGCCGTC
ACACTCGCTCTGCAGACGCGAGGGTCCATCCGCCTTTCGCGAGAACGTCTCCATGGGCTACTCGCGGTTCGTGAGCGCGG
AGGACCTGAAGCGTTCTAGTTTCCTCAAGGACGACTGCTTTGCCGTCCGGTGCAAGGTCACTGTCGTCCAGA------AC
TGTGCCGTCA---A---AGGGGACGCGAGGCCCCG------TGGGAAGGCGTTGGCTAGGTT-CTT-----TAGTTGCAT
CCGTGGATAGATCATAGATGTGCCCCGTT-GAAAAAAAATTGGCGCATTGTT-GGGAGAAAATTTGCTATACGTTAACTA
ATTCCTGTTGTTTCACTCATACCAGTCTTTTTTCTTTAAGATATATCTGGATTAAATAGAGTTGAGAAAACAACTGCTCG
GACCAATGGTC----------------------------------------------TCCTCCTCGGTCTACCTCCTCTC
TCCCCCATCGGGCGGTCTAGTCGGCGGGACCAGTGGGGACTCGCCCCTTTCATGTTTCTTAGTTCTA-------------
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>chr2D_20
-------------------AGAGAAAGCGGGGGTTGTAACCCATGTTGGCTATTGCTACTACTGGCAACGGCAATTGCTA
GAACCATTCATGGTGAAGCTGTGACCCACAGCAGAGACGACAATTTGCTGTAACCGTCGTCCTTTTTTGTTACGGCTGGC
GAGGAAATTTGCTACAACCATTTCATGGCAAAGCTACGACCCGCGACGGCATCGACAACGATTTGTTACAATTGTTGTCG
GCTTTTGCTATGACCGCCGAGGAAATTTGCTACAATTATTTAATGGTGATAACCGGTCGTAGTTGTTCGTCAAAATCGGG
GAAAAGTTGCAACTGTTGACGGAGCGGAGCTTCGACGGTGACGACGAGGATGGAGTGGAGACTTCCTGGAACGACCGACG
GTGGTGGTTGCGTAAGCATGACTAGTGGGGTGCTGCGATGGCTAGGTGCTCAAAGGACGAACGGGTGGCAAGCAGAGAGG
TGGCGTTATGCATTGGTGCTGCCGGGCCTGCCGCACCAGACGGGCCACCGCGTTTCATGAAGGAGTACCGATGAAGGAGC
TGTGCTGCGTGTGATGAATCTGCTTTCTCTTCTTGTGCTTGTTGTTGTGACTTTGGG------GCAGAAGGATAGGATGC
ATGGTTGGAAGGTTGGGGACGAAAAGGGAGTCAAATCCGATGGCTGGGAGATGGCCC-TCGAACGCGCAGGGTGCGACCG
GCCGAAAGTTGGACCGGTTGATTGGCGCCTATTTACCGACCAAAACAAAAACAATCTTTTCAAAACAAAAACGATCTGAT
GAGATCAAATCGTGGCATACACGGCACGGACAAAGCAAAATACTTTACGGCCGTTTGGAGTGTAATATCTCAACCAGATT
ACAACTC--TAAGCGGGCTTGGTCTCTTATACCAATCTCATGCATATATATATCGTCTCTTCCAAAACTAAACTTT----
-----GATTGTAGAATAGAATACGTCGCGTGCGTTTTTATCAATCTTGAGAAAGATGCCATCTTACTACGTGCCCTCGGA
TGACC------TGCCACTCGCGGAGGCCTCCGGGTCCACCGTCGCCGCCATCGCGGTCGGCGCCGGGGAGCACACGCTCA
CGGTCCAGG----GCTACTCGCGGCTCAAAACCATG---------AACGGCGGCTACCTGGAGTCCAGCGCGTTCAAGGC
GGGAGGACACGCCTGGAAGATCCGCTGCCACCTCAACGGGTCGGTCAAGGAAAACGCCGGCTTCGTCTCGGTGTTCCTCA
AGCTCGTCGGCGCCGAGGCCACCGACACCACCGCTGAAGCTGCCGATGCCGTC------------------------GTC
G---ACAAGGAGAACATCGTCCACGCCGAGCTCGAGTTCGCCCTGGTGCACCACCGAGGCACGCTGATAAAGTGGCCGTC
ACACTCGCTCGGCAGACGCGAGGGTCCCTCCGCCTTTCGCGAGAACGTCTCCATGGGCTACTCGCGGTTCGTGAGCGCCG
AGGACCTGAAGCGTTCCAGTTTCCTCAAGGACGACTGCTTTGCCGTCCGGTGCAAGGTCACCGTCGTCCAAA------AG
TGTGCCGTCA---A---AGGGGACGCGAGGCCCCG------TGGGAAGGCGTTGGCTAGGTT-CTT-----TAGTTGCAT
CCGTGGATAGATCATAGATGTACCCCGTT-GAAAAAAAATTGGCGCATTGTTTGGGAGAAAATTTGTTATGCGTTAACTA
ATTCCTGTTGTTTCACTCGTACCAGTTTTTTTTC-TTAAGATATATCTGGATTAAATATAGTTGAGAAAACAACTGCTCG
GGCCAACAGTTTAGAACAAGAGGTCGTAGCGTACCCCAACCCTAGCCACCGTCATGGTCCTCCTCCGTCTACCTCCTCTC
TC--CCATCGGGCGG------------------------------------------------TCTATCAGGTCATTGTT
TTCTTTAGAATTTTGTTTCCTATTGGCGTCCATGAGGTGGTGATGGTGACGACGCACTGAAATAAGGTCTCTCCGGTTTC
TCCTTGCTGCGGTGATGTCCGATCTAAGCGTTAACGACGGGCATGTGGCAGTTCGTGCGTCAACAATCAAGGAAAGCAGT
TGGCTAGCCCTTGGTGTGGCGACTACAACATCTTCTTTACATTTGTT-TGCTGGCATGATACGGTTTCTTCAACTTTCTA
GACTGGTGGTGAAGGATTACAACCCTGCGTTGTGTGGGTGATGCCCCGACCGCTGTTTGTTCATCGATTATTAGACCTCA
TTTCTAGCATCACATGGCTATTGTTGTCTTCAAAGTCTCGTATGGCTAGGGCATTTGCAGGTGTGTCTTTCCCTTACTCG
TCCGGTGCGGTTTTTATGCTCCGACGAGGGGCGTACAATCAAGAAAAGGTAATAGTAATAGCAATAATATGCCACTATTT
ATCAAGAAAAACATTTATATGTACTATATTTGTAGCACTCAGTTGCATGTTTCTCTTGGTTTAAAAATTCTATTTTAACC
TGAGCTAATTAATTAGCAT-----GTGTATAAGTGTAGTTACGAGGTACCCAAAGCAAGGAGAGGATGGGATGAACTCAA
CAATTTTGAAATTTGACTTGTATTTGGTCGGGAAAGGCCTATGACAACCCCAACGGACTATTGATCGAGATAGGCCCATG
GCAGGCCCAACGGGATGGGAAGGATTTTCGCGTCTGGGCTTTCCCCAACAGACAGTATCATGTT
>chr2A_1015
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--------------------------------------------------------------------CGTGCCCTCGGA
TGACCAACCACTGCAACACGCGGATGCCCCCGTGTCCACCGTCACGGCCACGGCCGTCGGCGCCGGGGAGCACATCCTCA
GGGTCGAGGGCTAGCTACTCGCGGCTCAAGACCATGCACGGCAGCGACGGCGGCTACCTGGAGTCCGCCGTGTTCATGGC
GGCGGGCCACGCCTGCCGGGTCTGCTGCTACCTCAACGGGGCGCGCCCGCAGGACGCCGGCTTCGTTTCGGTGTTTCTCA
GGCGCGACGACGACGACGCTGACG------------------------------CCGAT---------------------
G---CCGAAGAGAACGTCATCCACGCCGAGTACGAGTTCGCTCTGGTGCACCACCAAGGGACGCTGGTAAAGTGGCCGTC
GCAC------CGCGAATGCGGGACCGCCTCCGCCTTCGACAAGGGGAACTCCTGGGGCTGCCCGTCGTTCATCGCCGCGG
AGGACCTGAATCGCTCCAGGTTCCTCAAGGACGACTGCTTCGCCGTCCGGTGCAAGGTCACCGTCGTCCAGGTCCAGGAG
TGGGCCGTCC---A---AGAGGACGCGAGGCC------------------------------------------------
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>chr2B_1042
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---------------------GGAGTCTTCCGTGTCCACCGTCATCGCCACGGCGGTCGGCACCGGGCACCACACGCTCA
GGGTCCAGG----GCTACTCGCGACTCAAGACCATGCACGGCGGCAACGGCACCTACGTGGAGTCCAGCGCGTTCAAGGC
AGCAGGCCACACCTGGAGGATCTATTGCTACCTCGACGGGAAGCGCCCGGAGGACGCCGGCTTCGTCTCGCTATTCCTCA
TGTGCGACCCCGCCGATGCCTCCACCGGCAACGCCCTCGCCGCCGATGCCTCCACCGGCAACGCCCCCGCCGCCGATGCC
G---CCGCTGAGAGCGTACTCCACGCGGAGTATGAGTTCGCCCTGGTGCACCACCGAGGCACGCTGATAAAGTGGCCGTC
GCGC------AGCGTGCGCGGGAGCGCCTCCGCCTTTTGCTCGAGCAAGATGTGGGGCTTCCGGCGGTTCATCAGCAAGG
AGGACCTGGAGGGCTCCAGGTTCCTCAAGGACGACTGCTTTGTCGTCAGGTGCAAGGTCACCGTCCTCCAGG------AG
TTGGCCATCA---AGGAAGAGGACGCGAGGCCCCTTGGCCCTGGGAAGGCGTTTGCTAGGTTTCTATGTAATAGTTCCAT
CCGTGGATAGA---------------------------------------------------------------------
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>chr2B_1048
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---------------------------CTCCATGTCCACCGTCGTCGCCACGGCGGTCGGCACCGGGCACCACACGCTCA
GGGTCCAGG----GCTACTCGCGACTCGATACCATGCACGGCGGCAACGGCAGCTACGTGGAGTCCAGCGCGTTCAAGGC
AGCAGGCCACACCTGGAGGATCCGTTGCTACCTCAACGGGGAGCGCCCGAAGGACGCCGGCTTCGTCTTGCTGTTCCTCA
CGTGCCACCCCGCCGACGCCGCCA------------------------------CCGGCAATGCACCCGCCGCCGCCGCC
G---CCGCCGAGAGCGTCGTCCACGCCGAGTGCGAATTCGCCCTGGTGCACCACCAAGGGACGCTGGTAAAGTGGCCGTC
GCGC------TGCGAACGCTTGAGCGCCTCGGCCTTTTGCTCGAGCCACATGTGGGGCATCCCGCAGTTCATCAGCAAGG
AGGACCTGAAGCGTTCCAGGTTCCTCAAGGACGACTGCTTCGCCGTCCGGTGCAAGGTCACCGTCGTCCAGG------AG
TGGGCCGTCAAAGAGGAAGAGGACGCGAGCCCCCCGA-CCCTGGGAAGGCGTTTGCTAGGTTTCTG-----TAGTTCCAT
TTGTGGATAGAT--------------------------------------------------------------------
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>chr2B_1802
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--------------------------------------------------------TCCTAGTTCTATCAGGTCATTGTT
TTCTTTAGATTTTTGTTTCCTATTGGCACCGACGAGGTGCTGGTGGCGACGGCACATTGAAATAAAGTCTCTC-GGCTTT
TCCTTGCCGCGGCGAGGTCAGAGCGGAGCGTCAACGACGGGCATGTGGCGGTTCGTGCGTCAACAATCATGGAAAGGAGT
TGGCTGGCCCTTTGTGTGGCGACTACAACATCTTCTTTACATTTGTT-TGCCGGCATGATCCGGTTTCTTCAACTTTCTA
GACTGGTGGTGAAGGATTACAACCCTGCGTTGTGTGGGTGATGCCCCGACCGCTGTTTGTTCATCGATTATTAGACCTCA
TTTCTACCATCACATGGCTATTGTTGTCTTCAAAGTCTCGTATGGCTAGGGCATTTGCAGGTGTGTCTTTCCCTTACTCG
TCCGGTGCGGTTTTTATGCTCTGACGAGGGGCGTACAATCAAGAAAAGGTAATAGTAATAGCAATAATATGCCACTATTT
ATCAAGAAAAACATTTATATGTACTATATTTGTAGCACTCAGTTGCATGTTTCTCTTTGTTTAAAAATTCTATTTCAACC
TGAGCTAATTAATTAGCA-----GGTGTATAAGTGTAGTTACGAGGTAT-CAAAGCAAGGAGAGGATGGGATGAACTCAA
CAATTTTGAAATTTGACTTGTATTTGGTCGGGAAAGGCCCATGACAACCCCAACGGACTGTTGATCGAGATAGGCCCATG
GCAGGCCCAACGGGATGGGAAGGCTTTCCCCGTCTAGGCTTTCCCCAACAGACAGTGTCAGGTT
>SNPs
--------------SSSSS-------------------------------------------------------------
-------------------------------------------------------S------------------------
------------------------------------S---------S---------------------------------
-----------------------------------------------------------------------------S--
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--------------------------S------------------------------S----------------------
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-------------------S----------------------------------------------------------S-
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--------------------------------------------S-----------------------------------
-----------------------------------S----------------------------------------S---
S-------------S--S-------------------------SSS-SS-------------------------------
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-----------------------------S--------------------------------------------------
-SSS-----------------------------------S---------------------------------------S
----------------------------S---------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------S--------------S--------S-----------------------------
-----------------------------S------------------------------SS------------------
----------------------------S---------------------------------------------------
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--S---S-------------------------------------------------------------------------
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---------------------S---S---------------------S--------------------------------
--------S-----------------------S------------S---------------------------------S
----------------------------S---------------------------------------------------
------------------------------------------------S-------------------S-----------
-----------------------------------------------------------------------------S--
-S-----------------SSSS--------------------------------------S------------------
-------------------------------------------------------S-S-----S-S--------------
-------------S-------S-S------S------------------S----S---------
>forward_660
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ATGGTTGGAAGGTTGGGGAG------------------------------------------------------------
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>reverse_2742
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---------------------CGGTTTTCCTGTCTGGGCTT-----------------------
