>input_sequence_74339
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------------------------------------------------------ATGAAAAGGTGGACTAGGGATGCGAG
GGATGTTCTCCCATCACACCTGCAGATATACCAGCGAGACCATGCTGGGAGCAGGACGATGACGCATCGGCACACAGCTT
TGTACGTGCACGCGATGGAGCTGGTTCGGCTGGGCAACGCATCAATAGAGGCATACGAGAAAGGCATGAAGATAATTAGG
GATGGGATTGTTGCGTTGGCTGAATATGATGATCAGAGAGATGGCTTGGCCTTGGAGGACAGGGTTCCTTTGGCAAACAT
GGAGGCAAGGCAATGCGAAGGGGCAACACCGGAAATGGCTGGCCATGGAGGAGAAATGAATGTGGATACTTTGGCTGGCC
TCGATGCACCAGAGAGGAGGAGGAAACTTGGTCGACCAACGAGCAGCAGAGAAAAGGCGCCGTATGAAGAGTTGAGTAAG
AGAACCAGGTATTGCAGCATTTGCCGCGGAAAAGGGCACAAGAAGACGACTTGCCCGGAAAGAGGTGATCTTCCAAAAAA
ACCGAGGAAAGAAGCTAAATGCAGCAACTGCGGTGTTGCCGGTCACAGGCGGAACACCTGCACTAATGCGGAGGCTGTTA
AACTGCAGGCGTGCCCATGA------------------------------------------------------------
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>chr1A_1_TraesCS1A01G391300
TGTTTGCTGTTGAGCAGATCAATGCAGAGCCATGTAGGTGGCTTTGAAAAGTGTTCTTCCCTCGACGGCTCACCGGTGGT
GCAAATGGCATGTGTTGAAAAAGGTGAAGGAAACTCTTGGGCCGATGTACACAAAGTAGACAGATTTCCATGATGAGTTC
CACAAGGTGGTTAATCACATGCTTACAATTGATGAGTTTGAGCAAGCCTGGAAGATGTTGATAGAGAAGTACAACCTAGA
AAGCCACATCTACCTTTCTCAAGTGTATGAGGTTAGGCACAAATGGGCGAAGCCATTTTTCAAGGATGTGTTCTGTGTTA
AGATGACCAGCACGCAGCGGAGTGAGAGCGCTAACAGCATGCTGAAGTCATATGTCCCCCCG--GGATGCCCAATGCATA
TGTTTGTGAAACATTACATGCGCCTGCAGTTTGCCCGGGATGCGGACGAGAGCTATGAAGAAAATCGGAATAAAACTGTG
AGTATGCTTCAGG-TTTTTTTTTACGTTTTAGTTGGTGCTGGCGTGCTTGCAATCCATTGAACCATCGTTGATGTACTGA
TCGGATGTGAACATTCTGTTATTTGCTAAACAGGGTGGTGTGGTAGTCAAATGCAATATGTCATTGGAGAGGCATGCGGC
GAAGGTGTACACACGGGCGATGTTCGAGAAGCTAGGAGATCTGTTGTACCAGGCTCATGCATATAGAATTGAGGAAGTCG
AAAAGGGTAAGATTTACAAAGCGACACACACGCAAGCAGATAGGTGTGAGAGGTGGTCCCGGGTTGTCTTTGAGGTGAAG
ATTTTGGATGATGGCGCCATGTTAAAGTGCGAATGTGGGCTGTTTGAACACATGGGCATGCCGTGCTGCCACATGCTTAA
GGTACAACAAGATGAAAGATAGTTTTATGGATAGAGAAAATTAGCTTGCTGGTGCTATCACCATCTGATTTGTCCTGTCT
TGCAGGT----TATGGATGTTCTCCCATCAC-------ACCTTCAAGGTTGATAATGAAAAGGTGGACTAGGGATGCGAG
GGATGTTCTCCCATCACACCTGCAGATATACCAGCGAGACCATGCTGGGAGCAGGACGATGACGCATCGGCACACAGCTT
TGTACGTGCACGCGATGGAGCTGGTTCGGCTGGGCAACGCATCAATAGAGGCATACGAGAAAGGCATGAAGATAATTAGG
GATGGGATTGTTGCGTTGGCTGAATATGATGATCAGAGAGATGGCTTGGCCTTGGAGGACAGGGTTCCTTTGGCAAACAT
GGAGGCAAGGCAATGCGAAGGGGCAACACCGGAAATGGCTGGCCATGGAGGAGAAATGAATGTGGATACTTTGGCTGGCC
TCGATGCACCAGAGAGGAGGAGGAAACTTGGTCGACCAACGAGCAGCAGAGAAAAGGCGCCGTATGAAGAGTTGAGTAAG
AGAACCAGGTATTGCAGCATTTGCCGCGGAAAAGGGCACAAGAAGACGACTTGCCCGGAAAGAGGTGATCTTCCAAAAAA
ACCGAGGAAAGAAGCTAAATGCAGCAACTGCGGTGTTGCCGGTCACAGGCGGAACACCTGCACTAATGCGGAGGCTGTTA
AACTGCAGGCGTGCCCATGACAGACCTGGTAGTGTTGTATCTGTATGGATATGTTCTACTAGTCTTGCAATGTAGTTTTT
TCCAAGTGGTTGCGGTTTTAATTGTACGTGCGGTTGCCGTTTTAATTTTACGTGAAGTACGCTTGTGTTGATGTTGATCC
GTATGGTATGAAAAGTTTGTCTTGTAAGAAAAAAACTGCAGGCTACAGAGGCGATCAGTAGCCACATAGGTCGATGTGTG
TGTTTTTTAAGGGCGGTGCGTGTTCTGCTATGTGGGGCCATGCTTCAGTTTGAATTTTGAATTTTGAACGATTGAGGAGG
TACTGCTTTGTGGGGTGAGTGGTAAGGGGACGCACCACGTCGGCTTTCATGCCTTTAAGTAGCCAAAGCTCACCGAGCTG
GCGGTTTTTTTTTTTTTTTGCGAGGCACCGAGCTGGCGGTTAGGGACATACAAGGCAAAAGAGCACCATCTAGCCCAGGC
ACACATCGTATCGATTCAGTTGCTTCCTCGTCATGGCGCCGTCGTTTAGCTGGCCAAGCTCGGGCATCCTGTCGGCCGGC
TTAGCGTGCGAGCTAGACAGCGATTTGTTCGCGCATGTACGTGCTCGAAGTTTCTTTAATTGCAAGCGGACAGAAATGGT
TGCCAACAAATTGTCAAGTCTGACGGATTCTTCTCCATTTTTTCAGTGGCTGGGCATATCTGCTGGAGATGCGCCGCAGG
ATGGGGGTGAAGCCAGTTCAGTCCATGGTCAAGACGAGGTGGACGGCGGCCAAGCGGGTGATGCAGAGGTGGTTGTCGCT
GTTGAGGTAAAATGAAATCAAATCTGAAAGGGAAAAAAATTCATATGTGACCATAGGAAAAACTTAGATAGATTCTTCTT
TCGCTTGTGCGTCCGCAGGTGGGTAGAGAGGTTGCCGTCCCGTTAGCTTTGGAGGTGGAAGTCGTCGGCGAGGTGGATCT
TGCATGCATGTCGGTGTGGCTGATCACAAATAATAATGCTTACTGGTCCCCCGCGATGGA
>chr1D_4
---TTGCTGTTGAGCATATCAATGCAGAGCCATGGAGGTGGCTTTGAAAAATGTACTCCCCTCGATGGCTCACCAATGGT
GCAAATGGCATGTGTTGAAGAAGGTGAAGGAAACTCTTGGGCCGATGTACACGAAGCAGACAGATTTCCGTGACGAGTTC
CACAAGGTTGTTAACCACATGCTTACAATTGATGAGTTTGAGCAAGCCTGGAAGATGTTGATAGAGAAGTACAACCTAGA
AAGCCACAGCTACCTTTCTCAAGTGTATGAGGTTAGGCACAAATGGGCGAAGCCATTTTTCAAGGATGTGTTCTGTGCTA
AGATGACAAGCACGCAGCAAAGTGAGAGTGCTAACAGCATGCTGAAGTCATATGTCCCCCCCCCGGTTGCCCCATGCATA
TGTTTGTGAAACATTACATGCGGCTGCAGTTTGCCCGGGATGCAGACGAGAGCTATGAAGAAAAGCGGAATAAAACTATG
AGTATGCATATGACTTTTTGTTTTCCTTTTACTTGGTATTGGCGTGCTTGCAATCCATGAAACCATCGTTGGGGTAATGA
CCAGA---GAAAATGATGTTATTTGCT-AACAGGGTGGCGTGGTCGTGAAATGCAATATGTCGTTGGAGAGGCACGCGGC
CAAGGTGTACACGCGGGTGATGTTCGAGAAGCTAGGAGATCTGCTGTACTAGGCTCATGCATATAGAATTGAAGAAGTGG
AAAAGGGTAAGATTTACAAAGCGACGCACACGCAAGCAGATAGGCGTGAGAGGTGGTCCCGGGTTGTCTTTGAGGTGAAG
ATATTGGATGATGGCGCCATGTTAAAGTGCGAATGTGGGCTTTTTGA--ACATGGGCATGCCGTGCTGCCACATGCTGAA
GGTACAGTAAAATCAAAGAAAGTTTTGTGGAGACAGAAAGG-AGCTTGCTGGTGATATCGCCGTCTGATTTGTTCTGTCT
TGCAGGTTATATATGGATGTCATTGGCTACACATAAATACCTTCAAGGTTGATAATGAAAAGGTGGACTAGGGATGCGAG
GGATGTTCTCCCATCACACCTACAGATATACCAGCGAGACCATGCTGGGAGCAGGACGATGACGCATCGGCACACAGCTT
TGTACGTGCACGCGATGGAGCTGGTTCGTCTGGGCGACGCATCAATAGAGGCATATGAGAAAGGCATGCAGATAATTAGG
GATGGGATTTTTG-------------------------------------------------------------------
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>chr2A_705
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-------------------------------------------------------------------ATTGAGGAAATCG
AAAAATGTAATATTTACAAAGCGACACACACTCAAGCAGATATGCGTGAGAGATGGTCGAGGGTTGTGTTCGAAGTGAAG
ATAATTCATGATGGCGCTATGATGAAGTGTGAGTGCAGTCTATTAGAGCACATGGACATGCCATGCTGCTACATGCTAAA
GGTGAAAAAAAGAACTCGAGTTATTATCTTTGGAGATCAACTGCGGCGGCTCTCCAAATGCCTGGCTGATGCTTTTGTAT
TGCAGGC----TATGGATGTCCTTGGCTACACATAGATCCCTCCTAAGTTGATAATGAAGAGGTGGACTAGGGATGCGAG
GGATGTGCTCCAGTCACACCTACAGATATACCAGCGAGACCATGCCGACAGTAGGACGATGACCCACCGGCACACTGCTT
TGTATGTGCACGCAATGGAGCTGGTGCGTCTCGGTGATGCATCAATAGAGGCTTATGAGAGAGGCATGAAGATAATTAGG
GATGGGATTTCTGCTTTGGCTAAATACGAAGACCAAAGGGATGGTTTGGGCCTGGAGGACAGGGCTCCGTTGCCAAATGA
TGAAGCTGATCAATGCGAAGGAGCTAACCCAAAATTGGGCATGGATGCGCTGGAGCTGAATGTTGATACTTTGGCAGGTC
TTGATGCACCGGAGAAGAGGAGGAAGCTCGGACGTCCAAAGAACAATCATGAGAAGGCACTGTATGAAGAGTTGAGTAAG
AGAACCCGATATTGCAGTATTTGCCGGGGCAAGGGACACAAGAAGACGACTTGTCCAGAACGAGGTGATCTTCCGAAAAA
ACCAAGGAAGGAAGCAAAGTGCAGCAACTGTGGAGTTGCTGGGCACAGGAGGAACACCTGCACTAATGCCCAGGCTGTCA
AACTGCAGACTAGTCCATGAAAGAGCTAGTTAGT----------------------------------------------
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>SNPs
SSS-------------S-----------------S---------------S---S--S-------S--------SS----
-------------------S--------------------------------S---S------------S---S------
--------S-----S-----------------------------------------------------------------
--------S--------------------------------------------------------------------S--
-------S----------SS--------S--------------------------------S----S-----S-------
----------------------S--------------------S--------------------S------------S--
-------S-SS-S------S---S-S-----S-----SS-------------------SS-----------SS---S---
S-S--SSS---S--SS-----------S----------S-----S--S--------------S-----------S-----
S-----------S----S-------------------------S-----S------------------------------
--------------------------------------------S-----------------------------------
--S--------------------------------------S-----S-----------------------------S--
-------S--S--S-----S------S----S-S------S------------------S--S----------S------
--------------------S--SSSS-SSS-------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------S------S-------------------S------------------------
---------S----S------S----S--S--S--S--S-----S----S-S------------S---S---S----SSS
S--S--SSSS-----------S--S-SS--SS--S---SSSSSS---SSSSS--SS-------S-----------S--S-
-S--------S----S---------S--S--S--S----S--S--SSSSS--S-----S-S-------------------
------S-S--------S--------S--S--S--S-----------------S--S---S-------------S-----
---S-----S-----S--S-----------S--S-----S--S------S-------------------SS-------S-
--------S-SS-S------S---S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_133
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---------------------------------CTCTTGGGCCGATGTACACA---------------------------
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>reverse_1149
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----------------------------GCTGGGCAACGCATCAATAG--------------------------------
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>forward_848
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----------------------------GCGAATGTGGGCTGTTTGAA--------------------------------
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>reverse_1799
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--------------------------------------CAGGCTACAGAGGCGATCAG----------------------
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