>input_sequence_74332
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-------------------------------------------ATGATTGGTGCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTTGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGTTGCTCGGGATG
GTTGGAGGAAGGAAAAATGTGAAATCGGTGGCTCAAAAATCCAGTGAAAAGTATTTCCCAGATTGGATTTATGATCACTT
TGCTCAAGATGATGGATTAGAAGCATGTCAAGTTACATGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCGTACAAGTATTACCTGTGTATCGCCCTACTATAACCAAAGTTCTAGAAATGTTTGAGAGAAGCTTAGATGAC
ATGGCCATGCCACCGAAGCAAAACTTCAGTGGACGACTGTAAGATGCTTCTACATCGATTAGTGTTCGCATTTCTC----
GGTGATG-TTCT-TATTTTG-CAAAAATATATTTTCAGTAACTTGACCTACTTGCTTATCTCTAATTACAGCGAAAACTC
AGCTCACAATATGAATGTTCAAAGCGCAAGCTCTACGACATCTGAGGAGATAAGGCTTGTGAATACAGGAAACGCACGAC
AATTTCCACCTCTTTGA---------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>chr3D_1_TraesCS3D01G048600
GGACTGGCAGGAAGATTATGCTAATAGGTATGCCAAAACTTTTGCCATCTTTTCATATGTAAGGATTTAAATATCAGTAG
TTCACTGATAGTGATTTTCGATGAGGAAATGATAACTTTAAATGTAGAATCTTTGTACTCACTGAAAGTTGATTCTAGAA
TCAAAATCTGAAAGCAAGTGTGGTCATGTGAAACCTTAACCCCCAAACCTGTGGTTTTGCGCAATTAACTTGAATTTAAA
ATTATTGATGTTCTAAGAGATCTAAATATCCCTATTATAAGTTTATAACTCCTGGTACAAAGAAAATA--AACGTCTGCT
TCAATCTCAGATTTGGCATCAGCGGCTGCAGCACTGCTCTTTCCTTGTATTTATGTGCTGATATGGTACATGACGGGGAA
AAGAAACTGGTTTTCCCCCTGGAAAAAGAATAGTAGCAGCACAGAAAGGCATTACGAGGCGATGATAGCATCGTATGGAG
CACTTGCTCCAAAAAGATACATGTACTCAGAGGTCATGAAGATAACGTCTTCTCGCAATAAAAAGCTTGGTCAGGGTGGT
TATGGTGTGGTTTTCGAAGGAAAGCTACATGATGGTCATCTGGTTGCTGTCAAATTCTTGCATGACTGCAAAGGAAACGG
GGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACTTCTCAAGTGAATATTGTTAGCCTACTT-GGATTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCCATGGATAGATACATTTACTCAGAGAACCCAAA
AGAAATTTTAGGATGGGAGAGGCTCTATGCAATAGCGATTGGGATAGCTCGTGGACTAGAATATTTGCACAATAGCTGTA
ATACACGGATTGTCCATTTTGACATTAAGCTTCAAAATATCCTTCTAGACAAGGATTTTTGCCCAAAGATTGCCGATTTT
TGGCCTTGCTAAACTGTGTCGTACTAACGAGAGCAAACTTTCAATGATTGGTGCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTTGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGTTGCTCGGGATG
GTTGGAGGAAGGAAAAATGTGAAATCGGTGGCTCAAAAATCCAGTGAAAAGTATTTCCCAGATTGGATTTATGATCACTT
TGCTCAAGATGATGGATTAGAAGCATGTCAAGTTACATGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCGTACAAGTATTACCTGTGTATCGCCCTACTATAACCAAAGTTCTAGAAATGTTTGAGAGAAGCTTAGATGAC
ATGGCCATGCCACCGAAGCAAAACTTCAGTGGACGACTGTAAGATGCTTCTACATCGATTAGTGTTCGCATTTCTC----
GGTGATG-TTCT-TATTTTG-CAAAAATATATTTTCAGTAACTTGACCTACTTGCTTATCTCTAATTACAGCGAAAACTC
AGCTCACAATATGAATGTTCAAAGCGCAAGCTCTACGACATCTGAGGAGATAAGGCTTGTGAATACAGGAAACGCACGAC
AATTTCCACCTCTTTGAGAAGGTAACATGTAATAGTGTATATTCAGATGTTGAACAGGCTCAATTAAGTTCGACATTGTA
TCATAATCATTACAGAATTGCTAATACACAATTGACTGGAAATTT---CA--ATATAAATTCGTCAGTGTTCCAATTTTC
TTTGAGATTACCTAAAAAGA---------------------------------------------GGTGGCGAAATCAAA
AGTTTTAGTTTGATGTGCAACAAACGCTTATTCCATGTGCTGTGTACGAATGGCCTAGAGTAAAGGGTGGCTCTATCACC
AAATCTTGCTTCT---CTGGTTATAAATAAAACTCAGATAAATGTCT-GTTGAATTGAAGTTCCGTTAATGAT-AGTATT
GTCCAAGTTCGCAAATAATCACTTTATCAGTAATGGGGT---------TTATAAAGACTAACACATAATGA-TTTTTCAG
CTTGGCTGTTGGGAAGGGCATGAAGAACAGAAGAGATACAATGTCGTACCTTTGAGTTCATCATACAATAGGAGTGGTGA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AACAAACTTTGGCTTGCAGATGGGGATG
TCAATGCCAACTT-TTTTT--CTTCTCTGGTAGGCACTTATATGTGTGTCATATTTGAACTAGCACATACTAAGGTTGGA
CCACTT-------ACCAGGTGATAACTGAAGACTTCTGAGATCACTGTACTTTAGGAGTATACACAACACGAAGTTCAGA
CCTAGTTTTTTCTT--GTGTCCGATGAGTTTTGTGTTTCACCTTTTAAGTTCGAACAGATAAAATGATTGGATCTTATGC
CAAAATTAAGGTGGACAGCTATT---CCCACAAAAAGGC-AGACTGGTAGCA----------------------------
----------------------------------------AGATCTTCCGGAGTATAAATTCCCCCCAAAACTGGATAAA
CGTGATTTAAGCTCTAATTGCGGGGCTGAAATTTTAGAATCAGGATATA-AATTGTATATCCATCTAAATTTGCGACTAA
TTATATGCTAATTCGTAGCAAGCAGTTAATCGTGGAAGTCGAAGGCGGT--------ATACTTACTTGGTCCTCTGCTCG
GCAGGTGGTATCCACTCGAGGAAATG
>chr3B_171
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AAAGCATATGTAATCATCTGAAATCTTCA-CCCCAAACCTGTGGTTTTGCGCAGTTAACTTGAATTTAAA
ATTATTGATGTTCATAGAGATCTAAATATCCATGTTATAACTACGGGTAC-----------AAAGAGAATAACATATGCT
TCAATCTCAGGTTTGACATCAGCAGGTGCAGCACTGCTCTTTCCTTGTATCTATGTGCTGATATGGTATATGAGGGGAAA
AAGAAACTGGTTTCTCCTCTGGAAAAAGAATAGCAGCAGCACTGAAAGGCATTACAAGGCCATGATAGTATCATATGGGC
CGCTTGCTCCAAAAAGATACATGTACTCAGAGGTAATGAAGATAACATCTTTTCGCAATAAGAAGCTTGGTCAGGGTGGT
TACGGTGTAGTTTTTGAAGGAAAGCTACAAGATGGTCGTCTGGTTGCTGTGAAATTCTTGCATGACTGCAAAGGAAATGG
GGAGGAGTTTGTAAATGAGGTTATGAGCATTGGCAGGACCTCTCATGTGAATATTGTTAGACTGTTT-GGCTTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCCCTGGATAGATACATTTACTCAGAGAACCCAAA
AGAAATTTTAGGATGGGAGAGGCTCTATGCGATAGCAATCGGGATAGCTCGTGGACTGGAATATTTGCATCATAGTTGTA
ATACACGGATCATCCATTTTGACATTAAGCCCCAAAATATCCTTCTAGACAAATATTACTGCCCCAAGATTGCCGA-CTT
CGGTCTTGCTAAGCTCTGTCGTACCAAGGAGAGCAAGCTTTCAATGATTGGTCCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTTGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGTTGCTAGAGATG
GTTGGAGGCAGGAAAAATGTGAAATCTGTGGCTGAACAATCAAGCGAAAAGTATTTCCCAGATTGGATTTATGATCACTT
TGCTCGAGATGATGGATTAGAGGCATGTGAAGTTACAAGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCATACAAGTATTACCTGTGTATCGCCCTACTATAACCAAAGTTCTAGAAATGTTCGAGAGAAGCTTAGATGAT
ATGGCCATGCCACCAAAGCAGAACTTCAGTGGACTACTGTAAGATACTTCTACATCTATTTGTCTTCC--TTTTTT----
CGTGAAG-TTCC-TTTTTTT-CAA----ATAGTTTTAGTAACTTGACCTACTTGCTTATCCCCGATTCCAGCGAAAATGC
AGCTCATAATATGAATGTACAAAGTGCAAGCTCTACGACATCTGAGGAGATAAGGCTTGTGAATTCAGGAAACACACAAC
AATTTCCACCTCTTTGAGAAGGTAACCT-TACTAGGGTATATTCAGAAATTGAACAGGCTCAACTAAGTTCGACATTGTA
TCATAATCATTAAGGAATTGCTAATGCATAATTGATTGGAAATTCGTCCA--ATCTAAATTACTCAGTATTCTAATTTTG
TTTGAAAAGCCCTAATAAGAAGCGCTTTAACATTATAGAGAAGGGCCATGTTATGGGGATCTAACGGTGGTGAAATCAAA
AGTGTTAGTTT-ATTTGCAACAGACACTTATTCCATTTGTTGTGTCCGAATGACCTAGAGTAAAGGGTGGCTCTATCTGT
AAAGCATGCTTCTCTGCTGATTATAAATAAAACTCCAATAAATGTCTTGTTGAACTGAAGTTCCATTACGGAAAAGCATT
GTCCATGTAAGGAAATAATCACTGCATTAATAGATGGGGGTTATAT--------TGACTAAGACATTATGGTTTTTTCAG
GTTGGTAGTTGGGAAGGGCGTGCCGAATAGAAGAGGCACAATGTCATACCTTTGAATTCGTCTTGCATTAGGAGTGGCGA
CAACAAACTTCCATAGCCGGTTATCATAAAACC-ATTGTTGATAAAACTCACAGCAATGTCATCCACTGTTTTAAATAGC
CCGCTATAGCTCCGCTATAGCACGCTATAACATTTACAGAAGGTCTTGCGCTAAGTGACTTTGATCCAAACAAATGAACA
AACATTTTAAATAGCTCGCTATAGCTTCGCTATAGCACGCTATAGCATTTAGAAAAGGTCCGCCGCTAACAGGCTTAGCG
CGCTATTTAAAACTATGATGTCATCACAGGTTCGCATTATAGTTCTGCAAGAAACAAAAATTAGCCTGCATATGGAGATG
TCAATGGCAATCAATTATT--T-TATCCGACAGGCACCTAAATGCATGTCATATTTGTACTAGCGCATACCAAGGTTATA
CAACTTGCCTGTCACCAGGTGGTAACTGAAGCCTCCTA---TTT------------------------------------
---------------------------GTTTTGTGTCCCACCTTACAAGTTCGAACAGATAAAAGGATTCGATCTTATGC
CAAA-----GGCAGGCAGTTATT---TCTAAAAAAATGGGACACAACTAGCA----------------------------
----------------------------------------AGACCTCATAGAGTATAAATCCCCCCAAAAT-TCAATAAA
TGCGACTGGGACTCCAATTGCGGACCTAAAATTTTAGAATTTGGATATA-AG-TGTATATCTATCTAAAATTGTGACTAA
TTAGATGCCAATTCGTAGCGAGCAGATCA---A-----TCGCGGAAGCCGAAGGAGGATGCTTACTTGGTCCTCTGCTCG
GCAGGTGGTATCCACTACAGGAAATG
>chr3B_179
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTGGTCATGTGAAACACTAACCCCAAAAACG------TTGCACAATTAACTTCAATTTAAA
ACTATTGAAGTTCTTAGGTAGCTAAATGTCTATATTATAACTCTTGGTAC-----------AAAGAAAATAACTTCTCCT
TCAATCACAGCTTTGACATCAGCAGCTGCAGCACTGCTCTTCCCATGTATTTATGTGTTGATATGGTATATGACGGGCAA
AAGAAACTGGCTAATCCTCTGGAAAAAGAAGAGCAGTAGCACTGAAAGGCATTACGAGGCAATGATTGTATTGTATGGAT
CACTTGCTCCAAAAAGATACACCTACTCAGAGGTAATGAAGATGACGTCTTCTCGTCATAAGCGGCTTGGTCAAGGTGGT
TATGGTGTAGTTTTCGAAGGAAAGCTACATGATGGTCGTCTGGTTGCTGTGAAATTCTTGCAAGACTGCAAAGGAAACGG
AGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACCTCCTATGTGAATGTTGTTAGGCGGTTT-GGCTTTTGCTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCCCTGGAAAGGTACATTTACTCAGAGAACCCAAA
AGAGATTTTAGGATGGGAGAGGCTCTATGCGATAGCGATTGGGATAGCCCATGGACTAGAATATTTGCACCACAGTTGTA
ATACACGGATTGTCCATTTTGACATTAAACCTCAAAATATCCTTCTAGACAAAGATTTTGGCCCAAAGATTGCCGA-TTT
CGGTCTTGCTCAGCTGTGTCGTACCAAGGAGAGCAAGCTTTCGATGGTTGGTGCTAGAGGAACAATTGGATTCATTGTTC
CAGAAGTTCACTAACGAAACTTTGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGA-TGATGTTGCTAGAGATG
GTTGGAGGCAGGAAAAATGTGAAATCGGTGGCTGAAAAATCAAGCGAAAAGTATTTCCCAGATTGGATTTATGATCACTT
TGCTCAAGACGATGGATTAGAGGCATGTGAAGTTACAAGTGACAATGAGGAAATAGCAAGAAAAATGACGTTGATTGGCT
TGTGGTG-ATACAAGTATTACCTGTGTATCGCCCTACTATAACCAAAGTTCTGGAAATGTTCGAGAGAAGCATAGATGAT
ATGGCCATGCCACCGAAGCAGAACTTCAGCAGACTATTGTAAGATACTTCTACATCTATTTGTGTTCC--TTTTTT----
CCGTGAAATTCTTTTTTTTT-CAA----ATAATTTTAGTAACTTGACCTACTTCCTTA-CCCCAATTCCAGTGAAAATGC
AGCTCATAATATGAATGTATGGAGTTCAAGCTCTATGACATCTGAGGAGATAAGGCTTGTGAATTCAGGAAACACACAAC
AATTTGAACCTCTTTGAGAAGGTAACCT-TACTAGAGTATATTCAGAAATTGAACAGGCTTAACTAAGTTCGACATTGTA
TCATAATCATTAAGGAATTGCTAATTCATAATTGACTGGAAATTC---CA--ATATAAATTACTCAATCTTCTAATTTTG
TTTGAAAAAATCTAATAAGAAGCGCTTCAAGATTATAGAGAAGGGCCATGTTATGGGGATCTAATAGTGGTGAAATCAAA
AGTTTTAGTTT-ATGTGCAATAGGTGTTTATTCCATGTGTTGCGTCCAAATGACCTAGAGTAAAGGGTGGCTCTATCAGC
AAAGCATGCTTCT---CTGATTATAAATTAAACTCAGATAAATGTCTTGTTGAACTGAAGTTCCATTACGGAAATGCTTT
GTCCATGTAAGGAAGTAATCACTGCATCATTAGATGGGGGTTATATACTTATATGGACTAACACATTATGTTTTTTTCAG
GTTGGTAGTTGGGAAGGGCGTGTCGTACAGAAGATGCACGATATAATACCTTTGAGTTCATCTTACATTAGGAGTGACGA
CAAAAAACTTGCATAGCCGGTTATCATAAAACCCATTGTTGATAACAATCACAACAATGTCACATGCACA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATTATATTTCTGCAACAAACAAAAATTAGTTTGCACATGC-----
-------CAATCAAATTTT--T-TCTCCGACAGGCACCTAAATGCGTGTCATATTTGTACTTGAGCATACCAAGGTTGTA
GTACTTGCCTGTCCCCAGGTGTTAACTGAAGCCTCCTAAGATCAGTGTATTCCAGGAAGTACTAGCG-------------
----------------------CATGAGTTTTGTGTTCAACCTTACAAGTTAGAACAGATAAAATGATTGGATCTTATGC
CAAA-----GGCAGGCAGCTATT---CCTAAAAAAAAGC-ACACAACTATCA----------------------------
----------------------------------------AGACCATCAAGAGTATATGCC-------AAT-TTAATAAA
TGCGACTCAGACTCCAATTGCGGGCCTAAAATTTTAGAATCTGGATATAAAG-TGTATAACCATGTAAATTTGCGACTAA
TTATAGGCCAATTTACAGCAAGCAGATTAACCA-----TCGAAGGCTGC--------ATACTTACTTGGTCCTCTGTTGG
CAGG----------------------
>chr3B_222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CAATTAACTTCAATTTAAC
ACATTCGATGTTCTTAGAGATCTAAATATCCATATTATAACACCTGGTAC-----------AT---------CTACTTCT
TCAATCTCAGCTTTGACATCAGCAGCTGCAGCGCTACTCTTTGCATGTATTTATGTGCTGATATGGTATATGATGGGGAA
AAGGAACTGGTTTCAACTCTCGAAAAAGAATAGCAGCACCACTGAAAGGCATTACGAGGCCATGATAATATCTTATGGAT
CCCTTGCTCCCAAGAGATTCACTTACTCAGAAGTAATGAAGATAACGTCTTCTCGCAATAAGCAGCTTGGTAAAGGTGGT
TATGGTGTGGTCTTCGAAGGAAAGCTACATGATGGTCGTCTTGTTGCTGTGAAATTCTTGCATGATTGCAAAGGAAACGG
GGAAGAGTTTGTTAATGAGGTTATGAGCATTGGTAGGACCTCTCATGTCAATATTGTTAGCATGTTT-GGATTTTGTTTG
GAGGGATCAAAACGAGCTCTTGTATATGAGTACATGTGCAATGGTTCCCTGGATAGATACATTTACTCAGAGAATCCAAA
AGAAATTTTAGGATGGGAGAGGCTCTATGCAATAGCTACCGGGATAGCTCGTGGACTGGAATATTTGCACCATAGCTGTA
ATACACGGATCGTCCATTTTGACATTAAGCCTCAAAATATCCTTCTAGATCAGGATTTTTGCCCAAAAATTGCTGA-TTT
TGGTCTTGCTAAATTGTGTCGTACCAAGGAGAGCAAGCTTTCAATGATTGGTGCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTCGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGTTGCTAGAGATG
GTTGGAGGAAGGAAAAATGTGAAATCATTGGCTGAAAAATCCAGCGAAAAGTATTTTCCAGATTGGATTTATGACCACTT
TGCTCAAGATGATGGATTAGAAGCATGTGAAGTTACAAGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCATACAAGTATTACCTGTGTATCGCCCTACTATAACAAAAGTTCTAGAAATGTTCGGCAGAAGCTTAGATGAT
ATGGCCATGCCACCGAAGCAGAAGTTCAGTGGACTACTGTAAGATACTTCTACATCTGTTTGTGTTCC--TTTTTT----
GGTGAAG-TTGTTTTTTCTT-TAA----ATACTTTCAGTAACTTGACCTACTTGCTTATCCCTAATTCCAGCGAAAGTGC
AGCTCATAATATGAATGTAGAAAGTGCAAGCTCTATGACATCTGAGGAGATAAGGCTTGTGAATTCAGGAAATACACAAC
AATTTCCACCTCTTTGAGAAGGTAACCTGTAGCAGAGTATGTTTAGAAACTGAACAGGCTCAACTAAGTTTGAC-TTGTA
TGATAATCATTAAGGAATTGCTAATGCATAATTGACTAGAAATTC---CAATATATAAATTACTCAGTCTTCCAATTTTG
TTTGA---------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------
>chr3B_222
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CAATTAACTTCAATTTAAA
TCATTCGATGTTCTTAGAGCTCTAAATATCCATATTATAACACCTGGTAC-----------AT---------CTACTTTT
TCAATCTCAGCTTTGACATCAGCAGCTGCAGCGCTACTCTTTGCATGTATTTATGTGCTGATATGGTATATGACGGGGAA
AAGGAACTGGTTTCTCCTCTCGAAAAAGAATAGCAGCACCACTGAAAGGCATTACGAGGCCATGATAATATCTTATGGAT
CCCTTGCTCCAAAGAGATTCACTTACTCAGAAGTAATGAAGATAACGTCTTCTCGCAATAAGCAGCTTGGTAAAGGTGGT
TATGGTGTGGTCTTCGAAGGAAAGCTACATGATGGTCGTCTTGTTGCTGTGAAATTCTTGCATGATTGCAAAGGAAATGG
GGAAGAGTTTGTTAATGAGGTTATGAGCATTGGTAGGACCTCTCATGTGAATATTGTTAGCCTGTTT-GGATTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCTCTGGATAGATACATTTACTCAGAGAATCCAAA
AGAAATTTTAGGATGGGAGAGGCTCTATGCAATAGCTACCGGGATAGCTCGTGCACTGGAATATTTGCACCATAGCTGTA
ATACACGGATCGTCCATTTTGACATTAAGCCTCAAAATATCCTTCTAGATCAGGATTTTTGCCCAAAAATTGCTGA-TTT
TGGTCTTGCTAAACTGTGCGGTACCAAGGAGAGCAAGCTTTCAATGGTTGGTGCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTCGGACTTGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGTTGCTAGAGATT
GTTGGAGGAAGGAAAAATGTGAAATCATTGGCAGAAAAATCCAGCGAAAAGTATTTCCCAGATTGGATTTATGACCACTT
TGCTCAAGATGATGGATTAGAAGCATGTGAAGTTACAAGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCATACAAGTATTACCTGCGTATCGCCCTACTATAACAAAAGTTCTAGAAATGTTTGACAGAAGCTTAGATGAT
ATGGCCATGCCACCGAAGCAGAACTTCAATGGACTACTGTAAGATGCTTCTACATCTGTTTGTGTTCC--TTTTTT----
GGTGAAG-TTGTTTTTTCTT-TTA----ATACTTTCTGTAACTTGACCTACTTGCTTATCCCTAATTCCAGCGAAAATGC
AGCTCATAATATGAATGTAGAAAGTGCAAGCTCTATGACATCCGAGGAGATAAGGCTTGTGAATTCAGGAAATACACAAC
AATTTCCAACTCTTTGAGAAGGTAACCTGTAGCAGAGTATGTTTAGAAACTGAACAGGCTCAACTAAGTTTGAC-TTGTA
TGATAATCATTAAGGAATTGCTAATGCATAATTGACTAGAAATTC---CAATATATAAATTACTCAGTCTTCCAATTTTG
TTTGAAGAAACCAAGTAAGAAGCGCTTTAAGATTATAGAGAAGGGCCATGTGATGGAAATCTAGCTGTGGTGAAATCAAA
AGATTTAGTTT-ATGTGCAATAGACGTTTATTACATGTGTTGTGTCTGAATGACCTAGAGTAATGGGTGGCTCTATCTGT
AAAGCATGCTTTT---CTGATTATAAATAAAACTCGGATAAATGTCTTGTTGAGCTAAAGTTCCATTACGAAAAAACATT
GTCCATGTAAGGAAATAATCACTGCATCACCAGATGGGGGTTATAT--------TGACTAACACATTATGTTTTTTTCAG
GCTGGTAGTTGGGAATGGCGTGTCAAACATAAGAGGCACAATGTCATACCTTTGA-TTCATCTTACATTATGAGTGGCGA
CAACAAACTTGCATAGCCGGTTATCATAAAACCTGTTGTTGATAACACTCACAGCAATGTCACAGGCGT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GCATTATAGTTCTGCAACAAACGAAAATTAGCTTGCATATGGAGATG
TCAAGGCCAATCA-TTTTTTCT-TCTTCGACAGGCCCCTAAATGTGTGTCATATTTGTACTAGCGCATACCAAGGTTATA
CAACTTGCATGTCACTAGGTGATAACCGAAGCCTCCTA---TCACTGTATTCCAGGAAGTAGTAC---------------
-----------------------------TTTGTGTTCAGCCTTACAAGTTCGAATAGGTAAAAGGATTGGATCTTATCC
CAAA-----GACAGAGACTTACCAAGACCTTCCAGGCTATAATTTTCGAAGATCAGGGGAACTTTCCCCGGTTCCATTGC
ATAGAACGTGAAACCAAACCGGTCTGTCCAATCAAGTTACAGATCTTCCGGAGTAAAATTTACCCTAAAAACTT--TAAA
CGCGATTTAGGATTTAATTGTGGCCCTAAAATTTTA-AATCTGGATATAATT-------------TAAACATGGGAGTGA
TCATATGCCAATTCGTAGCAAGCAGAAGCT----------GAAGGCGGT--------ATACTTACTTGGTCCTCTGCTTG
GTAGGTGGTTTCTACTCGAGGAA---
>chr3B_239
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ACTATTGATAGTC-TAGAGATCTAAATGACCATAATATAAGTTCAGACCTCTCATTTCTAAAAACGAAATAACATATGCT
TCTATCTCAGTTTTGACAGCAACAGCTGCAACCTTGCTCTTTCTATGTATTTATGTGTTGATATGGCATAGAAAGGGTAA
AATACTATGGTTTCTCCTTTGCAAAAATACTAGCAGCATCACTGAAAGGAATTACGAAGCCATGATAGCAACCTATGGAT
CCCTAGCTCCCAAAAGATACCTGTACTCAGAGGTAATGAAGATAACATCTTACCGTAGCGATCAGCTCGGAAAAGGTGGT
TACGGTGTGGTTTTCAAAGGAAGACTACATGATGGTCTTCTGGTTGCTGTGAAATTTTTGCATGAATGCAAAGGAAATGG
GGACGAGTTTGTTAATGAGGTTATGAGCATTGGTAGGACCTCTCATGTTAATGTTGTCAGCCTATTT-GGGTTTTGTTTG
GAGGGATCAAAACGAGCACTTATATACGAGTACATGTCCAACGGTTCCTTGGATAAGTTCATTTACTCGGAGAACCCCAA
AGAAATTTTAGGATGGCAGAGGCTCTATGCTATAGCACTTGGGATTGCTCGTGGCCTAGAATACTTGCACCATAGTTGTA
ATACACGGATTATTCATTTCGATATCAAGCCTCAAAATATACTTCTAGACAAGGATTTTAGCCCAAAGATTGCTGA-TTT
CAGACTGGCTAAATTGTGTCATGCAAAGGAGAGCAAGCTTTCAATGACTGGTGCTAGAGGAACAATTGGGTTCATCGCTC
CAGAAGTTCACTCTCGAACCTTCGGAGTGGTTTCGACAAAATCAGATGTTTATAGTTATGGAATGATGCTTTTAGAGATG
GTTGGAGGCAGAAGAAATGTAAAATCTATTGTTGAAAATTCCAGCGAAAAGTATTTTCCAGATTGGATTTATGACCACTT
TGCGCATGATGATGGATTACAAGCATGTGAAGTGACAGGAGAAATGGAGGAAATCGCAAGAAAGATGACGTTAATTGGCT
TGTGGTGCATACAAATATTGCCTGCATATCGCCCTACTATAACCAAAGTTCTAGAAATGTTCGAGAGAAGCTCTGATGAC
ATGGACATGCCACCGAAGCAAAACTTCTCTGGATTGATGTAAGATATTTCTCCATACATCTCTGTTTC--ATTAGTTTTC
GGAGAAG-TTGTTATATTGAACGA----TTATTTTGAATCACTTGACCTATGTGCTTATCTCTCGTTCCAGTGAAAATTC
AGCTCACAACATGAATGTAGAAAGTGCCAGCTCTACAAGATCTG-AGAGACAAGACTTGTAAATTCAAAAATCCTACAAT
GATTGCCAACTCTTTGAGAAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>chr3D_280
AGTATTATAACTTCTGTTTTAC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAGGAAATAACATCTGCT
TCCATCTCAGGTATGACATCAGTAGCTGCAACATTTCTCTTTGCATGTCTTTATGTGCTGATATGGCATAGAAAGGGGAA
AAGACTATGGTTTCTCCTTTGCAAGAAGACTAGCAGCACCACTGAAAAGAATTATGAGGCCATGATAGTGTCGTATGGAT
CCCTAGCTCCAACAAGATACACGTACTCAGAGGTAATGAAGATAACATCTTCTCGCAACAATCAGCTTGGGAAAGGTGGT
TATGGTGTGGTTTTCAAAGGAAGACTACATGATGGTCCTCTGGTGGCTGTGAAATTCTTGCATGACTGCAAAGGAAATGG
GGACGAGTTTGTGAATGAGGTCATGAGCATTGGCAGGACCTCTCATGTTAATGTTGTTAGCTTATTT-GGGTTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATACGAGTACATGCCCAACGGTTCCTTGGATCAGTACATTTATTCAGAGCACCCCAA
AGAAATTTTAGGATGGGAGAGGCTTTATGCGATAGCAATCGGGATTGCGCGTGGCCTCGAATACTTGCACCATAGCTGTA
ATACACGTATCGTCCATTTCGATATCAAGCCCCAAAATATCCTTCTAGACAAAGATTTTAGCCCAAAGATTGCTGA-TTT
TGGTCTAGCTAAGTTGTGTCATACAAAGGAGAGCAATCTTTCAATGACTGGAGCTAGAGGAACAATTGGATTCATCGCCC
CAGAAGTTCACTCTCGAACCTTCGGGGTGGTTTCAACAAAGTCAGATGTTTATAGTTATGGAATGATGCTGCTGGAGATG
GTTGGAGGTAGGAGAAACGTAAAATCAATTGTTGCAAAATCCAGCGAAAAGTATTTTCCAGATTGGATTTACGATCACTT
TGCACAAGATGATGGACTACAAGCATGTGAAGTGACAAGAGAAATTGAGGAGATTGCGAGAAAGATGACATTCATTGGCT
TGTGGTGCATACAAGTGTTACCTATGTATCGCCCTACTATAACCAAAGTTCTAGAAATGTTTGAGAGAAGCTTAGATGAT
CTGGACATGCCGCCGAAGCAGAACTTCTGTGAACTACTGTAAGAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>chr3A_296
-------------------TAC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAGGAAATAACATCTGCT
TCCATCTCAGGTATGACATCAGCAGCTGCAGCATTTCTCTTTGCATGTCTTTATGTGCTGATATGGCATAGAAAGGGGAA
AAGATCATGGTTTCTCCTTTGCAAGAAGACTAGCAGCAACACTGAAAAGAATTACGAGGCAATGATAGTGTCATATGGAT
CCCTAGCTCCAACAAGATACACGTACTCAGAGGTACTGAAGATAACGTCTTCTCGCAACAATCAGCTTGGGAAAGGTGGT
TATGGTGTGGTTTTCAAAGGAAGACTACATGATGGTCGTCTGGTGGCTGTGAAATTCTTGCATGACTGCAAAGGAAATGG
GGACGAGTTTGTGAATGAGGTCATGAGCATTGGCAGGACCTCTCATGTTAATGTTGTTAGTTTATTT-GGGTTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGCCCAACGGTTCCTTGGATCAGTACATTTATTCAGAGCACCCCAA
AGAAATTTTAGGATGGGAGAGGCTTTATGCGATAGCAATCGGGATTGCTCGTGGCCTCGAATACTTGCACCATAGCTGTA
ATACACGTATTGTCCATTTCGATATCAAGCCCCAAAATATCCTTCTAGACAAAGATTTTAGCCCAAAGATTGCTGA-TTT
TGGTCTAGCTAAATTGTGTCATACAAAAGAGAGCAATCTTTCAATGACTGGAGCTAGAGGAACAATTGGATTTATAGCCC
CAGAAGTTCACTCTCGAACCTTCGGGGTGGTTTCAACAAAGTCGGATGTTTATAGTTACGGAATGATGCTGCTGGAGATG
GTTGGAGGTAGGAGAAACGTAAAATCGATTGTTGCAAAATCCAGCGAAAAGTATTTTCCAGATTGGATTTACGATCACTT
TGCACAAGATGATGGACTACAAGCATGTGAAGTGACAAGAGAAATTGAGGAGATTGCGAGAAAGATAACATTCATTGGCT
TGTGGTGCATACAAGTGTTACCTATGTATCGCCCTACTATAACCAAAGTTCTAGAAATGTTTGAGAGAAGCTTAGATGAT
CTGGACATGCCGCCAAAGCAGAACTTCTGTGAACTACTGTAAGAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------
>chr3B_309
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AACATCTACT
TCTATCCCAGCTTTGATATCAGCAGCTGCAGCACTGCTCTTCCCATGTATTTATGTGCTGATATGGTATATGACGGGTAA
AAGAAACTGGTTTCTTCTCTGGAAAAAGAAAAGCAGCAGCGCTGAAAGGCAATATGAGGCCATGATAGCGTCGTATGGAT
CACTTGCTCCAAAAAGATACACATACTCAGAGGTAATGAAGATGACGTCTTCTCGCCATAAGCAGCTTGGTCAAGGTGGT
TATGGTGTCGTTTTCGAAGGAAAGGTACCTGATGGTCATCTGGTTGCTGTGAAATTCTTGCACGACTGCAAAGGGAATGG
GGAGGAGTTTGTGAATGAGGTTATGAGCATTGGCAGGACCTCTCATGTCAATGTTGTTAGCCTGTTT-GGATTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCCTTGGATAGATACATTTACTCAGACAACCCAAA
AGAAATTTTAGGATGGGAGAGGCTGTATGCGATAGCGATTGGGATAGCCCGTGGACTGGAATATTTGCACCATAGTTGTA
ATACACGGATCATTCATTTTGACATTAAGCCTCAAAATATCCTTCTAGACAAGGATTTTTGTCCAAAAATTGCCGA-TTT
TGGTCTTGCAAAACTGTGCCGTAACAAGGAGAGCAAGCTTTCAATGATTGGTGCTAGAGGTACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTTGGACTTGTTTCAACAAAGTTAGATGTTTATAGTTATGGAATGATGTTGCTAGAGATG
GTTGGAGGCAGGAAAAATGTGAAATCAATGGCTGAAAAATCAAGCGAAAAATATTTCCCAGATTGGATTTATGATCACTT
TGCTCAAGACGATGGATTAGAAGCATGTGAAGTTACAAATGATATTGAGGAAATTGCAAGTAAGATGACCCTGATTGGCT
TGTGGTGCATACAAGTATTACCTGTGTATCGTCCTAGTATAACAAAAGTGGTAGAAATGTTCGACAAAAGCTTAGATGAC
ATGGCCATGCCACCGAAGCAAAACTTCAGTGGACTACTGTAAGATACTTCTACATCCGTTTGTGTTCC--CTTTTTAC--
CGTGAAG-TTCCA---TTTT-AAA----ATATTTTCAATAACTTGACCTACTTGCTTATCTCCAATTTCAGCGAAAATTC
AGCTCACAATATGAACGTACAAAGTGCAAGCTCTATGACATCCGAGGAGATAAGGCTTGTGAATTCCGGAAGCACACAAC
AATTTCCACCTCTTTGAAAAGGTAACCTGTACTAGAATATATTCAGAAGTTCAAGAGGCTCAACTAAGTTCGACATTTAA
TCATAATCACTATGGAATTGCTAATGCATAC-TGACTGGAA---------------------------ATTCAAATTTTC
TTTGAAAAAAA-TAATAGCAATTGCTTTAAGATTGTAGAGAAGGGCAAAGTTTTAGTTTG--------------------
---------------------ATGTGCATATTCCATGTGCTGTGTACGAATGACCTAGAGTAAAGGGTGGCTCTATCCCT
AAATCTTGCTTCT---CTGGTTATAAATAAAACTCAGATAAACATCT-ATTGAATTGAAGCTCCATTGATGAAAATCATT
GTCTAAGTTCGCAAATAATCACTATATCACTAGATGTGGGTTATAA--------GGAGTAACATATAATGA-TTTTTCAG
CTTGGCTGTTGGGAAGGGCGTGAAGAACAGAAGAGATACAATGTCATACCATTGAGTTCATGGCACAATAGGAGTGGTGA
GAACAAACTTTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCTTGCAGATGGAGATG
TCAACGCCAACCA-TTTTT--C-TCTCTGATAGGCACTTAAATGCGTGTCATATTTGAACTAGCACATACCAAGGTTGTA
CCAC-------TCACCAGTTGATAACTGAAGATTTCTGAGATCACTGTATTTTAGGAGTATACACAGCGCGAAGTACAGA
CCAATTTTTTCCTTAGGTGTTCCATGAGTTTTGTGTTCCACCTTCCAAGTTCAAATAGATAAAATTATTGGACCTTATGC
CAAA-----GGCAGACAGCCCTATTCCCCCAAAAAAGGG-AGACAGGTAGCA----------------------------
----------------------------------------AGATCTTCCAGAGTACCATTTCGCCCCAAAACTGAATAAA
CGTGATTTAAGCTCTAATTGTGGGGCTGAAATTTTAGAATCATGATATAAAG-TGTATATCCCTCTAAACATGCACCTAA
TTATATGGCAATTCAAAGCAAGCAGATTA---A-----TCGAAGGCGGT--------ATACTTACTTGTTCCTCTGCTCC
GTAGGTGGTATCCACTCGAGGAAATG
>chr3D_610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAATTCTTGCATGACTGCAAAGGAAATGG
GGAGGAGTTTGTGAATGAGGTTACAAGCATTGGCATGACCTCTCATGTCAATGTTGTTAGCCTGTTTGGGATTTTGTTTG
GAGGGATCAAAACGAGCTCTTATATATGAGTACATGTGCAATGGTTCCTTGGATAGATACATTTACTTAGAGAACCCAAA
AGAAATTTTAGGATGGGAGAGGCTCTATGCGATAGCGATTGGGATAGCTCGTGGACTGGAATATTTGCACCATAGCTGTA
ATACACGGATCGTCCATTTTGACATTAAGCCTCAAAATATCCTTCTAGACAAAGATTTTTGCCCAAAGATTGCCGA-TTT
CGGTCTTGCCAAGCTGTGTCGTACCAAGGAGAGCAAGCTTTCAATGATTGGTGCTAGAGGAACAATTGGATTCATTGCTC
CAGAAGTTCACTCACGAAACTTCGGACTTGTTTCAACGAAATCAGATGTTTATAGTTATGGAATGATGTTGCTAGAGATG
GTCGGAGGAAGGAAAAATGTGAAATCAGTGGCTGAAAAATCTAGCGAAAAGTATTTCTCAGATTGGATTTATGACCACTT
TGCTCAAGATGATGGATTAGAAGCATGCGAAGTTACAAGTGACATTGAGGAAATTGCAAGAAAGATGACCTTGATTGGCT
TGTGGTGCATACATGTATAACCTGTGTATCACCCTACTATAATCAAAGTTCTAGAAATGTTCGACAGAAGCTTCGATGAT
ATGGCCATGCCACCGAAGCAGAACTTCAGTGGACTACTGTAAGATACTTCTACATCTATTTGTGTTCC--TTTTTT----
GGTGAAG-TTGTTTTTTCTT-TAA----ATACTTTCAGTAACTTGACCTACTTTCGTATCCCTAATTCCAGCGAAATTGC
AGCTCATAATATGAATGTACAAAATGGAAGCTCTACGACATCTGAAGAGATAAGGCTTGTGAATTCAGGAAATACACAAC
AATTTCCACCTCTTTGAGAAGGTAACCTGTAGCAGAGTATGTTTAGAAACTGAACAGGCTCAACTAAGTTTGACATTGTA
TGATAATCATTAAGTAATTGCTAATGCATAATTGACTGGAAATTG---CA--ATATAAATTACCCAGTCTTCCAATTTTG
TTTGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>SNPs
S-SS-SSS-SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------SS--------------------------------------------------------------
--------------S----------------S-------------S-S---SSSS-S-S--S--S-S------S------
----------S----S-------S--------------------------------------------S-----------
-------------SS--S---------------S--------S-----------------S------------------S
----------------------------------S--------------------------S------------------
--------------------------------------------------S-----------------------------
---------------------------------------S-----S------------------S---------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------------S---------
------------------------------S---------------------------------------------S---
---S--------------------S--S--------S-------------------------------------------
-------------------------------------------------------------------------S-S----
---------------------------------S----------S-----------------------------------
----------------------------S--------S------------------------------------------
--------S-----------------------------------------------------------------------
----------------------------------S---------------------S---S------SSS---S-S----
-----S--------S----S----SSSS---------------------------------------S---------S--
------------------S-----S---------------------------------------S--------S---S--
--------------------------S----S---S-----------S---------------S----------------
------------SS-----------S--S---------------S----------------SS-----S-----------
-----S-SS------S------------------------------------------------------S---------
-----------S----------S-----------------------------S---------------------------
----------------------------------------------------------------S-------S---S---
-----------------------S-----S--SSS---S--------------SS-------------------------
-------------------S-------------------------S----------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SS--S------------S----
-----------SS---------S------S----------S-----------------------------S-------S-
-------------------------------------------------S----------------S-S------S----
--S-S-----S---------S-S--------------S------SS----------------------------------
----SSSSS--SS-----------------S-------------------------------------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------SS---------------------------
--------S----------------S-S---SSSSSSS------------------------------------------
--------------------------
>forward_461
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CAGAAAGGCATTACGAGGCG-------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_2460
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TTTGGCTTGCAGATGGGGAT-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
