>input_sequence_74283
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-------------ATGCGGCGCGCGAGGCCGCCGCCGGGGCCGGGGCTGGAGGGCGAGGAGGTGCGGTACCGCGGGGTGC
GGCGGCGCCCGTCGGGCCGGTACGCGGCCGAGATCCGCGACCCGGCCAAGAAGACCCCGATCTGGCTCGGCACCTTCGAC
TCCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCCGCCCGGAACCTCCGCGGCGCCGCCGCGCGCACCAACTTCCCCGC
CTCCCCCGCCGCGGCGCCGCCGCGCGCGCCGCCCCCCGCCCCCGTCGCCGCGCCGGCGACGATGGCCGCGGCGGCCACGT
CCAGCCACAGCAGCACGATCGAGTCCTGGAGCGGCGGGAACGTCCCGCCCACCAGCGTCCTCTTCCGCGCCGCCGC----
-----GATCGGCGCCCCGGCCATCGAGGAGGACTGCCGCAGCTACTGCGGCTCCTCCTCGTCCGCGGTGTGCGAGGACGG
CGCGTCGGGGGGCGCCGCCGCGGCCGCAGACGAGGCCGCCGCGCCGCCGCGCCCCTCCTCGTCCTCGCTGCCCTTCGATC
TGAACCTGCCGGACCCCGCGGCCGCCGCCGACGAGATGGACTGGCGCTGCGACACGCTGCTCCGCCTCTGA---------
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>chr6A_1_TraesCS6A01G131200
TGGAAGTAGGCAAGCATGAGAGACCCATCGCATGTGCAAGGTTATGCCTGCCCTTTGTGCGGGAAAAGCGATAAACGTGT
AACACAACGTTCAGAGACGCGTTGGCTCTTTCCTTTTGTCTTCAGTGCTGTACTGCCGTAGCCTATGCACCTTTGACAAC
TGTTCGGAATAGATACTTGGTGGGAGAATTCAAGATGAATGGGCACTATAGTAGGACTTGTGTTTTTTCGGGCAATTTTG
GCAGAAACATACATGGA---------TTCAAAATTGCAGAAATGAAGTTTAGAAGGAAGAAACATTTCCTGAAGAATTCC
ATGTGTGGCAGCAGAGCAGACGCAACCCGCCTGCTTACCATGTGTCGCTGTGTCGGCTCCCAGCAATCTCATCCACGAAT
CGTGCGCTTAAAATCCCGTCCCGTAGATAT---------------------------------ATAAATAAAATAAACGG
CGCAACCAA-GATCGACCGCACGGCACGCACCGGCAGGGCAGGCGGCAGCGTCGGCGAATATGCCCCGCTAGTGGCCGAC
GGCGCTACTGCCGACCGTGGCCACCACCGCGATTCCGCACCCATCCGTCCATCACAGAAAGGGGCA---AAAAAATCCGT
CCACCAGACAGACAGACGGTCAGTCTACCAGCGGCCGGGAGAGGGGGTACGCGTCGCGCTGACGCCGGGCGGGAACGCGG
TGCGGGGAGGGGGAGGTGACGACCCGACCCCAACCCCAACCTCACCCGACCCGAGGAGGACGGGGACGTGGACGCGGTCG
AT------TGGAATTGGAATGGAATAATAATCATAAACAAACCGACGCGACGCCCGGTCGTGGGCGGGCCCGCCGCGTCA
GCCGGCCAGCCCGC-TGCCGAGTGCCGACCAAACACACAAACAAGGCGCGCACGGTGGAGTCGCCGAGGGAAGGAGGCCG
AGCGAGCGCGAGACGAGAGAGACCACACCAGACGAGGCGAGCGAGACCACACCAGGCTCCGCCGAGGGAGGGGAGGCGAG
GCGAGGCGGCGCGATGCGGCGCGCGAGGCCGCCGCCGGGGCCGGGGCTGGAGGGCGAGGAGGTGCGGTACCGCGGGGTGC
GGCGGCGCCCGTCGGGCCGGTACGCGGCCGAGATCCGCGACCCGGCCAAGAAGACCCCGATCTGGCTCGGCACCTTCGAC
TCCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCCGCCCGGAACCTCCGCGGCGCCGCCGCGCGCACCAACTTCCCCGC
CTCCCCCGCCGCGGCGCCGCCGCGCGCGCCGCCCCCCGCCCCCGTCGCCGCGCCGGCGACGATGGCCGCGGCGGCCACGT
CCAGCCACAGCAGCACGATCGAGTCCTGGAGCGGCGGGAACGTCCCGCCCACCAGCGTCCTCTTCCGCGCCGCCGC----
-----GATCGGCGCCCCGGCCATCGAGGAGGACTGCCGCAGCTACTGCGGCTCCTCCTCGTCCGCGGTGTGCGAGGACGG
CGCGTCGGGGGGCGCCGCCGCGGCCGCAGACGAGGCCGCCGCGCCGCCGCGCCCCTCCTCGTCCTCGCTGCCCTTCGATC
TGAACCTGCCGGACCCCGCGGCCGCCGCCGACGAGATGGACTGGCGCTGCGACACGCTGCTCCGCCTCTGATCGGCCTCC
CGCCTGCTGCTTCGGATGCGTCACCTCCCTCCCCCTTCCCGCTCCCGGACTAA-CGCGGCGGCGCGGCTGCCTACTGCGA
AGTGCTTCTTCTACTATCTCGATAGAATTGGATTTTTGGTCTCCGTTTTACTACCACTCAAGTTCTGAATATCTGATACT
CTGCCTTATGTGATAATGTGAATAAGCTCATCATCATCATATCATCATGTAATCCACGGGAAATAGACTGATAATTTTTG
CCATCTTTCTGTCTTCTTACTTGTGTATCATCCACGAGT---------TGCTGCCTCTGCTA-TTTTGCTATAGTATCGA
TTAATTA---GATGCCTAATGGAAGAAAGCAATAGGAAATTTACATG-AACTTGTGTGAACTGGGTCATTTGCTTTCCGA
GATTGTTGGCTGCTTGACGATCGAG-AGGTTTAGCACCTGAAACAGTGTATGATTTTG-----CTGTTCTGTATCTGTGC
ATTATGCAGCATGGCCGGAAAGCTTTTGGCCTGTGGCCTTCCTGCCGACACGATAAGCCATCGATGTGCACCACAAGATT
TTCAAGGAGTTTGGATCATAGCGCTACTCTGATGCGTGTATGCTCTTGAGCAAATCATCACACTAGAAGAAGAACCCAAA
ATCGAGCAGCAGATGCAGGGCTCGGCTCTGGATCTCTGTGTGTGGTTTCCCATTCTGTTGTTGCTCCTGTCTCTCGAGGT
CCATATTTATCCATGGTGCTAATCTCTGCTAAGTGTTGAGGTCAGATGTACTCTACTACTGTTCTTTGGGCAAGGATTAG
CAGAAGAGCAGGATGTCGTCAAAGTGGTGCCACACGGTAGAAATGGCTCTGATGATCTTCATTTCTGAGTTCCAGACCTG
TCGAACATAGGTGGGCGCCCGGTTTGGA----------------------------------------------------
--------------------------GAGAAAAATTAACGGCGATCGTAGCCCTAATTAAGGCGATCTCCCAAGTTCCAG
ACCTGTCGAACAGAAGTACAACTACAACGTCCCTACTTGTTCGTTCACAT
>chr6B_1
TGGAAGTAGGCAAGCGTGAGAGACCCATGGCATGTGCAAGGTTATGCCTGCCC-TTGTGTGGGAAAAGTGATAAACGTGT
AACACAATGTTCAGAGATGCGTCGGCTCTTTCCTTTTGTCTTCAGTGCTGTACTGCCGTAGCCTATGCATCTTTGACCAC
TGTTCGGAATAGATACCTGGTGGGAAAATTCAAGATGAATAGGCACTATAGTAGGACTTGTGTTTTTTCCGGCAATTTTG
GCAGAAACATGCATGGATTGGCCAGTTTCAAAATTGCAGAAATGAAGTTTAGAAGGAAGAAACATTTTCTGAAGAATTCC
ATGTGTGGCAGCAGAGCAGACGCTACCCGCCTGC-TACCATGTGTCGCTGTGTCGGCTCCCAACAATCTCATCCACGAAT
CGTGCGCTTAAAATCGCGTCCCGTAATATATAATATTCCCGTAATATATAATATAGTGATATAATAAATAAAATAAACGG
CGCAACCAAAGATCGACCGCACGGCACGCACCGGCAGGCCAGGCTGCAGCGTCGGCGAATATGCCCCGCTAGTGGCCGAC
GGCGCTACTGCCGACCGTGCCCACCACCGCGATTCCGCACCCATCCGTCCATCACAGAAAGGG--A---AAAAAATCTGT
GCACCAGA----CAGACGGTTAGTCTACCAGCGGCCGGGAGAGGGGGTACGCGTCGCGCTGACGCCGGACGGGAACGCGG
TGCGGGGAGGGGGAGGTGACGACCCGACCCCAACCTCAACCTCACCCGACCC---GAGGACGGGGACGTGGACGCGGTCG
AT------TGGAAT------GGAATAATAATCATAAACAAACCGACGCGACGCCCGGTCGTGGGCGGGCCCGCCGCGTCA
GCCGGCCAGCCCGC-TGCCGA-------CCAAACACACAAACAAGGCGCGCACGGTGGAGTCGCCGAGGGA---AGGCCG
AGCGAGCGCGAGACGAGAGAGACCACACCAGACGAGGCGAGCGAGAGGGG---------CGCCGAGGGAGGCGAGGCGA-
---------CGCGATGCGGCGCGCGAGGCCGCCGCCGGGGCCGGGGCTGGAGGGCGAGGAGGTGAGGTACCGCGGGGTGC
GGCGGCGCCCGTCGGGCCGGTACGCGGCCGAGATCCGCGACCCGGCGAAGAAGACCCCGATCTGGCTCGGCACCTTCGAC
TCCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCCGCCAGGAACCTCCGCGGCGCCGCCGCGCGCACCAACTTCCCCGC
CTCCCCCGCCGCGGCGCCGCCGCGCGCGGCGCCCCCCGCCCCCGTCGCCGCGCCGGCGACGATGGCCGCGGCGGCCACAT
CTAGCCACAGCAGCACGATCGAGTCCTGGAGCGGCGG---CGTCCCGGCCACCAGCGTCCTCTTCCGCGCCGCCGCCGCA
GCCGCGATCGGCGCCCCGGCCGTCGAGGAGGACTGCCGCAGCTACTGCGGCTCCTCCTCGTCCGCGGTGTGCGAGGACGG
CGCGTC---GGGGGGCGCCGCTGCCGCAGACGAGGTTGCAGCGCCGCCGCGCCCCTCCTCGTCCTCGCTGCCCTTCGATC
TGAACCTGCCGGACCCCGCGGCCGCCGCCGACGAGATGGACTGGCGCTGCGACACGCTGCTCCGCCTCTGATCGGCCTCC
CGCCT---GCTTCGGATGCGTCACCTCCT--CCCCTTCCTGCTCCCGGACTAA-CGCGGCGGCGCGGCTGCCTACTGCGA
AGTG---CTTCTACTATCTCGATAGAATTGGATTTTTGGTCTCTGTTTTACTACCACTCAAGTTCTGAATATCTGATACT
CTGCCTTATGTGATAATGTGAATAAGTTCATCATCATCATATCATCATGTAATCCACGGGAAATAGACTGATAATTTTTG
CCATCTTTCTCTGTTCTTACTTGTGTGTCATCCACTGGC---------TGCTGCAGCAGCTGCTGTCGATATAGTATGGA
TTGATTAGATGATGCGTAATGGAAGAAAGCAAGAGGAAATTTACATGTAACTTGTGTGAACTGGCTCATTTGTTTTCTGA
GATTGTTGGCTGCTGAGCGAGAGAGAAGTTCTGGCTCCTGGAAGAGTGTCTGATTGTG-----CTGTTCTGTATCTCTGC
ATTATGCAGCATGGCCAGAAAGCTTTTGGCCTGTGGCCTTCCTGCCGACACGATACAACATCGATGTGCACCACGAGAAT
TTCAAGGAATTTGGATCATAATGCTCCTCTGATGTTTGTATTCTCTTGAGCAAATCATCACACTGGA-----AACCCAAA
ATCAAGCAGCAGATGCAGGGCTCCGCTCTGGATCTCCGTGTGTGGCTTCCCGTTCTGTGGCTGCTGCTGTCTCTCGCGGT
GCA---TTATCCATGGTGCTAATCTCTGCTGAGTGTTGAGGTCCGATGTACTCTACTACTGTTCTTTGGGCAAGGATTAC
CACAAGGGCAGGATATCGTCAAAGTGGTGCCGCACGGTAGAAATGGCT-TGATGATCTTCATTTCTGAGTTCCTGGGCGT
TGCGCCTTCTCCATTAAGGTAAAAGCAGAGCACCGGCGGAAACAAGGAAAATCAGAACATCCGAGCTAACTTTATAACGG
CGATCATATGGGGGATGCCTCGTT-GGAAAAAAATTAACAGCAATCATAGCCCTAATTAAGGCGATCTCCCAAGTTCCAG
ACCTGTCGAACAGAAGTACAACTACAACGTCCCTACTTCTTCGTTCACAT
>chr6D_49
------------------------------------------------TGCCC-TTGTGTGGGAAAAGTGATAAACGTGT
AACACAATGTTCAGAGATGCATTGACTCTTTCCTTTTGTCTTCAGTGCTGTACTGCCGCAGCCTATGCATCTTTGACAAC
TGTTTGGAATAGATACTTGGTGGGAGAATTCAGGATGAATAGGCACTATAGTAGGACTTGTGTTTGTTGGGGTGATTTTG
GCAGAAACATACATGGATTGGCCGGCTTAAAAAATGCAGAAATGAAGTTTAGAAGGAAGAACCATTTCCTGAAGAAATCC
ATGTGTGGCAGCAGAGCAGACGCTACC----TGC-TACCATGTGTCGCTGTGTCGGCTCCCAACAATCTCATCCACGAAT
CGTGCGCTTAAAATCCCGTCCCGTAAATAT---------------------------------ATAAATAAAATAAACGG
CGCAACCAAAGATCGACCGCACGGCACGCACCGGCAGCCGAGGCGGCAGCGTCGGCGAATATGCCCCGCTAGTGGCCGAC
GGCGCTACTGCCGACCGTGCCCACCACCGCGATTCCGCACCCATCCGTCCATCACAGAAAGGTTTTTCCAAAAAATCCGT
CCACCAGA----CAGACGGTCAGTCTACCAGCGGCCGGGAGAGGGGGTACGCGTCGCGCTGACGCCGGACGGGAACGCGG
TGCGGGGAGGGGGAGGTGACGACCCGACCCCAACCCCAACCTCACCCGACCCGAGGAGGACGGGGACGTGGACGCGGTCG
ATTGGAATTGGAAT------GGAATAATAATCATAAACAAACCGACGCGACGCCCGGTCGTGGGCGGGCCCGCCGCGTCA
GCCGGCCAGCCCGCCTGCCGA-------CCAAACACACAAACAAGGCGCGCACGGTGGAGTCGCCGAGGGA---AGGCCG
AGCGAGCGCGAGACGAGAGAGACCACACCAGACGAGGCGAGCGAGACC----CAGGCTCCGCCGAGGGAGGCGAGGCGA-
---------CGCGATGCGGCGCGCGAGGCCGCCGCCGGGGCCGGGGCTGGAGGGCGAGGAGGTGAGGTACCGCGGGGTGC
GGCGGCGCCCGTCGGGCCGGTACGCGGCCGAGATCCGCGACCCGGCGAAGAAGACCCCGATCTGGCTCGGCACCTTCGAC
TCCGCCGAGGCCGCCGCGCGCGCCTACGACGCCGCCGCCAGGAACCTCCGCGGCGCCGCCGCGCGCACCAACTTCCCCGC
CTCCCCCGCCGCGGCGCCGCCGCGCGCGGCGCCCCCCGCCCCCGTCGCCGCGCCGGCGGCGATGGCCGCGGCGGCCACGT
CTAGCCACAGCAGCACGATCGAGTCCTGGAGCGGCGGGAACGTCCCGCCCACCAGCGTCCTCTTCCGCGCCGCCGC---A
GCCGCGATCGGCGCCCCGGCCGTCGAGGAGGACTGCCGCAGCTACTGCGGCTCCTCCTCGTCCGCGGTGTGCGAGGACGG
CGCGTCGGGGGGCGCCGCCGCCGCCGCAGACGAGGCCGCCGCGCCGCCGCGCCCCTCCTCGTCCTCGCTGCCCTTCGATC
TGAACCTGCCGGACCCCGCGGCCGCCGCCGACGAGATGGACTGGCGCTGCGACACGCTGCTCCGCCTCTGATCGGCCTCC
CGCCT---GCTTCGGATGCGTCACCTCCCTCCCCCTTCCCGCTCCCGGATTAACCGCGGCGGCGCGGCTGCCTACTGCGA
AGTGCTTCTTCTACTATCTCGATAGAATTGGATTTTTGGTCTCCGTTTTACTACCACTCAAGTTCTGAATATCTGATACT
CTGCCTTATGTGATAATGTGAATAAGCTCATCATCATCATATCATCATGTAATCCACGGGAAATAGACTGATAATTTTGG
CCATCTTTCTCTGTTCTTACTTGTGTATCATCCACGGGCGGCGGCTGCTGCTGCTGCTGTTA-TGTTGATATGGTATGGA
TTAATTA---GATGCGTAATGGAAGAAATCAAGAGGAAATTTACTTGT-------GTGAACTGGGTCATTTGCTTCCTGA
GATTGTTGGCTGCTGAACGAAAGAGAAGTTTTGGCTCCTGGAAGAGTGTCTGGTTGTGCTGTTCTGTTCTGTATCTCTGC
ATTATGCAGCATGGCCGGAAAGCTTTTCGCCCGTGGTCTTCCTGCCGACACGATACGCCACCGATCTGCACCACAAGAAT
TTCAAGGAATTTGGATCATAACGCTCTTGTGATGTGTGTATGCTCCTCAACAAATCATCACACTA-AAGAAGAACCCAAA
ATCTAGCAGCAGATGCAGGACTCGGCTCTGGATCTCTGTGTGTGGTTTCCCATTCTGTTGTTGCTCCTGTCTCTCGAGGT
CCAT--TTATCCATGGTGCTAATCTCTGCTAAGTGTTGAGGTCAGATGTACTCTACTACTGTTCTTTGGGCAAGGATTAG
CACAAGAGCAGGATATCTTCAAAGTGGTGCCGCACGGTAGAAATGGCT-TGATGATCTTCATTTCTGAGTTCCTGGGCGT
TGCGCATTCTCCATTAAGGCAAAAG------------------------------AACATCCGAGCTAACTTTATAACGG
CGATCATAGGGGGGATGCATCGTTGGGAAAAAAATTAACAGCGATCATAGCCCTAATTAAGGCGATCTCCCAAGTTCCAG
ACCTGTCGAACAGAAGTACAACTACAATGTCGCTACTTCTTCGTTCACAT
>SNPs
---------------S------------S------------------------S-----S--------S-----------
-------S---------S---------------------------------------------------S----------
----------------------------------------S---------------------------------------
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-----------------------S----------S---------------------------S-----------------
-------------------------S------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------S-------------------------------------------SS---------------
--------SSSS--------------------------------------------------------S-----------
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--------------SSSSSS------------------------------------------------------------
---------------------SSSSSSS-------------------------------------------SSS------
------------------------------------------------SSSS-------------------S-------S
SSSSSSSSS-------------------------------------------------------S---------------
----------------------------------------------S---------------------------------
---------------------------------------S----------------------------------------
----------------------------S---------------------------------------------------
-S------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------S----------------------------------------------------------
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-----SSS------------------------------------------------------------------------
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----------S-S-----------------------S-S---------------SS--------S---S--------S--
---------------S----------------S--------------------------------------------S--
--------------SS----SS------S---S--S----S--S-----S-----S--------------------S---
-------------------------------------------------------S----------------------S-
--------S-----------S----S--------S---------------------------------------------
---S----------------------------------------------------------------------------
----SS--------------------------------------------------------------------------
--S-----------S----------------S----------------S------------------------S-SS-SS
-SSSS-S-SSSSSSSSSSS-SSSSSSSS----------------------------------------------------
----------------------------S----------S------S---------------------------------
--------------------------------------S-----------
>forward_816
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----------------------------------------------------------------------------GACG
CGGTCGATTGGAATTG----------------------------------------------------------------
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>reverse_2557
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----------------------------------------------------------------------------CCTG
TCGAACATAGGTGGGC----------------------------------------------------------------
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