>input_sequence_74245
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-----------------------------------------------------------------------ATGCCGCGG
AACTATCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAACTTCCTCTGCGCGGTGCTGCTCACGCT
CGTCCTCATCGCCGGCATCATCCTCTTCGTGCTGTGGCTCAGCCTCCGCCCGCACCGCCCCAAGTTCACGCTCACCGACT
TCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGTTCGCCGTCAACGAGCACAACCCCAAC
CAGAAGATCGGCATCCACTTCGAGGCCGTCTACGGCTCCGT------------CTACTACGACGACGAGCTCATCGCGTC
CGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTGGTGCAGGGCGAGCTCGCCGCCTCCGGCCCGA
CGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCGTCGGGCTGCGCCTCGTGCTCAACTCC
ACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCCGACTGCGGGTTCAAGATCAGCGGGGA
CGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAG----------------------------
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>chr2D_1_TraesCS2D01G225000
ACACCCTTCCCTATTTCAAAAGAATTGCCAGTGAAAACAGCGTCCAACAAACTACCATTAGGGCACGTAAACTATCAGGG
TACTGTATATGCTTGCCTTGTCAATCACCACTCGCCAATTAGTCGGGACCGCTCCTTGTTGAACTGGCGCATCTCACCAT
GGTCTTGCTTCCTTGGGAAGATAAGGGCAGCCTTGTTTACGGGCAAAAGCGAAGACGAATTTCGTAGTGCCAGGTTCACG
AGGATACCTTTCTGGATATGCAATACCTGAGGTATTTTCTTTAGAAAGGATATACTACAGATACAAAAAA--AAACTCAT
ACGAAAATGGTTGAAGTTGTACTAAAGCAACGATAATCAATATGGATCGAAGGGAGTACCAAATTACCAGTGACATCCCC
ATAGACCATAGTAAACTTAGGTGGTTTTAGCTAACGAATCCAAGGAATGGTTTTGCCGTCTGTGGTCTGCAGCATTTCCC
TTTGCGTCTGCCCGAGGGCGAAGCTTCGGCAACTGTTCTTCCCATATCCGCAGGAATCCTCAAGCAAAGAATTCAAGAAT
AAGTTAGTCGGAGCCGCAGAATATGTAGTACTACCTTTTACAGGCAAGGGAACTTGCTTTACAACATGTACATGATACGT
TTACAGAGAAACGATGCGGCAGAATCATACCACGACAGAGAAAAACATCC----GTAAACAAACAGAAGAACGTATACTC
ACCAATCCGCTTAAACAGAGCTCGCCCTTTCGAGTTCTTCGGTTTCACTTTCCAGCAGTCCAGCTCTGTCAAAGCCAGCC
TCATGGGAATCAACATCCAGTACGCCCATCTTCATCAACAGTTTTGCGTGCTAGCGTCTGCCATCTTTGGCGCACGGCAA
GAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAAACGCCACACGCAAGCATACGCATCACG
TACACCAACCAGCGTCA-----------------GGAACAGCGCCGGCG--------CCGCTCGACCAGCCATGCCGCGG
AACTATCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAACTTCCTCTGCGCGGTGCTGCTCACGCT
CGTCCTCATCGCCGGCATCATCCTCTTCGTGCTGTGGCTCAGCCTCCGCCCGCACCGCCCCAAGTTCACGCTCACCGACT
TCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGTTCGCCGTCAACGAGCACAACCCCAAC
CAGAAGATCGGCATCCACTTCGAGGCCGTCTACGGCTCCGT------------CTACTACGACGACGAGCTCATCGCGTC
CGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTGGTGCAGGGCGAGCTCGCCGCCTCCGGCCCGA
CGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCGTCGGGCTGCGCCTCGTGCTCAACTCC
ACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCCGACTGCGGGTTCAAGATCAGCGGGGA
CGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAGACTTCTAGTGGATCATTCA-AGCTGCTC
TTCTCTTATTTTTCC-TTCCCTC-TGATTTATTTCTCTTTCTTCTTGAACATAACTGCTTGTCATTTGGGTTTGGGGTGG
TATTGGTGATTCCTTTGTTTTAATTCATGTGCTTGACGTACATGTATTGGTGACTA---CATTTTATAGACTGCGATCTT
TCTAATGCAAAAAGAATGATGTGAGCATCAAAGGGCGCTGAAATTTGGTTCCAGATGTCTACATGTCATGAACTTTGTGA
TCATTGTAAATTTGTAATTAAGTGTGAATGCATGTGAGGATCGGAAGGTTTCAAATGTCTTGCAAAATAAAAAGACAACA
----------TATTTAATAATTCAACATCTGATGAAATGAAAAACATAAAAGAAGACAACAAATTTAACAGCTGGCGATC
CAATGCAAAAACATACGAAATATAGTAAGATAGCAGCTACTCCCTCCGTTCTTAAATAGAAGTCT------AGATTTCAC
TATGGACTATATACTGATGTAAGTAGACATGGTTTAGAGCGTAGATTCACTCATTTTGCTTCGTATATAGTCTCTTACTG
AAATCTCTAAAA-AAACTTATATTTAGGAACGGACGGAGTAGAATATAATTAACCATGGTCTGAAAGGGCACGCTGCTGG
TTCTATTTTAGTGCAAGCATCTATTTATAC--ATATATGCTTAACCTTTCACCAG-----TTTTTCGAAAGTCATGCAGC
CGTATCTCTCGTTTCTTCTAACTTCGTTAGAGCATCTAAGGGCATTTACAATGCAGAGCGCTAAGGCGGGCGCTAGGGTC
AGGATCCCGGTCGTTTTGCTTAGTTCCCGTTCAAATCTGGGAATTCGGCGGGCGCTAACCCTGTTTCTCGTTCTAATTTT
CTGAGTATAGCGCTGGTACACAGCTCTCAGCGTTGCAAGCAGAGTCGCTTAGCCAGGCGCTAGGACCAGAATAATATTTT
ATTTCTAATCAAGCGCCTAATTAGGCGCCTCCCATTGGACAT
>chr2B_1
ACACCTTTCTATATTTCAAAAGAATTGCCAGTGAAAACAGCGTCCAACAAACTACCATTTGGGCACGTAAATTATCAGGG
TACTGTATATGCTTGCCTTGTCAACCACCACTCGCCAATTAGTTGGGACCGCTCCTTGTTGGACTGGCGCATCTCACCAT
GGTCTTGCTTCCTTGGGAAG-----------------------------------------TCGTAGTGCCAGGTTCACG
AGGAT--------GGATATGCAATACCTGAGATATTTTCTTTAGAAAG-ATATACTACATATACAAAAAAAAAAACTCGT
ACGAAAATGGTTGAAGTTGTACTAAAGCAACGGCAATCAACATGGATGGGAGGGAGTACCAGATTACCAGTGACATCCTC
ATAGACCATAGTAAATTTAGGTGCTTTTAGCTAACGAATCCAAGGAACGGTGTTGCCATCTCGGGTCTGCAGCATTTCCC
TTTGCGTCTGCCCGAGGGCGAAGCTTCGGCAACTGTTCTTCCCATATCCGCAGGAAACCTCAAGCAAAGAATTCAAGAAT
AAGTTAGTCAGAGCCGCAGAATATGTACTA----CTTTTACAGGCAAGGGAGCTTGCTTTACAACATGTACATCATACGT
TTACAGAGAAACGATGCGGCAGAACCATACCACGACAGAGAAAAATATCTTATTGTAAACAAACAGGAGAACGTATGCTC
GCCCATCCGCTTAAACAGAGCTCGCCCTTTCGAGTTATTCGGCTTCACTTTCCAGCAGTCCAGCTCTGTCAAAGCCAGCC
TCACGGGAATCAACATCCAGTACGTTCG---TCATCAACAGTTTTGCGTGCTAGCGTGTGCCATCTTTGGCGCACGGCAA
GAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAATCGTCAAACGCAAGCATACGCATCACG
TACACCAACCAGCGTCACGAACTGCACACGTACAGGTACAGCGCCGGCGCCGGTCGATCGATCGAGCAGCCATGCCGCGG
AACTACCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAACTTCCTCTGCGCGGTGCTGCTCACGCT
CGTCCTCATCGCCGGCATCATCCTCTTCGTGCTCTGGCTCAGCCTCCGCCCGCACCGCCCCAAGTTCACGCTCACCGACT
TCAGCATCCCCAACGTCAACCGCCAGTCCGGCGCCGCCAACCTGCCCGTCAAGTTCGCCGTCAACGAGCACAACCCCAAC
CAGAAGATCGGCATCCACTTCGAGG------------CCGT------------CTACTACGACGACGAGCTCATCGCGTC
CGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTAGTGCAGGGCGAGCTCGCCGCCTCCGGCCCGA
CGCCGACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCGTGGGGCTGCGCCTGGTACTCAACTCC
ACGGTGAGGTTCCAGGTGAAGGTGTGGGACACCAAGGAGCACCACATGAAGGCGGACTGCGGGTTCAAGATCAGCGGGGA
CGGCAGCCTCCACCAGGAGGACAGGAACACGCCCTGCACGCTCTACTTCTAGACTTCTAGTGGATCATTCACAGCTGCTC
TTCTATTAGTTTTCC-TTCCCTCTTGATTTATTTCTCTTTCTTCTTGAACATAACTGCTTGTCATTTGGGTTTGGGGTGG
TAATGGTGATTCCTTTGTTTTAATTCATGTGCTTGACGTACATGTATTGGTGACTA---CATTTTATAGACTGCGATCCT
TCTAATGCAAAAAGAATGATGTGAGCATCAAAGGGCGCTGAAATTTCGTTCCAGATGTCTACATGTCATGAAATTTGTGA
TCATTGTAAATTTGTAATTAAGTGTGAATGCATGTGAGGATCGGAAGGTTTCAAATGTCTTGCAAGATAAAAAGATAACA
----------TATTTAACAATGCAACATCTGATT-----AAAAACATAAAAGAAGACAACAAATTTAACAGCTGGCGATC
CAATGCAAAAACATACGAAATATAGTAAGATAGAAGCTACTCCCTCCGTTTCTAAATAGAAGTCTTTCTCGAGATTTCAA
TATGGACTATATACGGATGTAAGTAGACATGGTTTAGAGCGTAGATTCATTCATTTTGCT-------------CTTAATC
AAATCTCTAAAAGAAACTTATATTTAGGAACGGACGGAGTAGAATATAGTTAACCATGGTCTGAAAGGGCACGCTGCTGG
TTCTGTTTTAGTGCAAGCATCTATTTATATATATATATGCTTAACCTTTCACCATATGTATTTTTCGAAAGTCATGCAGC
CGTATCTCTCGTTTCTTCTAACTTCGTTAGAGCATCTAA-----------------------------------------
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>chr2A_585
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--------------------------AGTACTACCTTTTACAGGCAAGGGAGCTTGCTTTACAACATGTACATGATACGT
TTACAGAGAAACGATGCGGGAGAATCATACCACGACAGAGAAAAATATCC----GTAAACAAACAGAAGAACGTATGCTC
ACCAATCCGCTT-AACAGAGCTCGCCCTTTCGAGTTATTCGGTTTCACTTTCCAGCAGCCCAGCTCTGTCAGAGCCAGCC
TCACGGGAATCAACATCCGGTACGTTCATCCTCATCAACAGTTTTGCGTGCTAGCGTCTGCCATCTTTGGCGCACGGCAA
GAATATTACTGCCTTGCACACCGTGGCATGCATGGCGCATGTGGACCTATAAAACGCCACACGCAAGCATACGCATCACG
TACACCAACCAGCGTCA-----------------GGAACAGCGCCGGCGCCGCTCGACCGATCGACCAGCCATGCCGCGG
AACTACCGCCTGCCGTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAACTTCCTCTGCGCGGTGCTGCTCACGCT
CGTCCTCATCGCCGGCATCATCCTCTTCGTGCTGTGGCTCAGCCTCCGCCCGCACCGCCCCAAGTTCACGCTCACCGACT
TCAGCATCCCCAACGTGAACCGCCAGTCGGGCGCCGCCAACCTGCCCGTCAAGTTGGCCGTCAACGAGCACAACCCCAAC
CAGAAGATCGGCATCCACTTCGAGG------------CCGTCTACGGCTCCGTCTACTACGACGACGAGCTCATCGCGTC
GGGCCCCGTCATGTACCCCTTCTACCAGCCGCCCAAGGGCGACACGCTGGTGCAGGGCGAGCTGGCCGCCTCCGGCCCGA
CGCCCACCGACCCCGCGTGGCAGCGCTTCGCCAGCGAGGTGGGCGCCGGCAGCGTGGGGCTGCGCCTGGTGCTCAACTCC
ACGGTGAGGTTCCAGGTGAAGCTGTGGGACACCAAGGAGCACCACATGAAGGCCGACTGCGGGTTCAAGATCAGCGGGGA
CGGCAGCCTCCACCAGGAGGACAGGAACACGCAGTGCACGCTCTACTTCTAGAATTCTAGTGGATCATTCA-AGCTGCTC
TTCTCTTATTTTTCCCTTCCCTC-TGAATTACTTCTCTTTCTTCTTGAACATAACTGCTTGTCATTTGGGTTTGGGGTGG
TATTGGTAATTCCTTTGTTTT-ATTCATGTGCTTGACGTACATGTATTGGTTACTAGTACATTTTATAGACTGCAATCTT
TCTAATGCAAACAGAATGACGTGAGCATCAAAGGGCGCTGAAATTTGGTTCCAGATGTCTACATGTCATGAACTTTGTGA
TCATTGTAAATTTGTAATGAAGCGTGAATGCATGTGAGAATCGAAAGGTTCCAAATGTCCTGCAAAATAAAAAGAAGACA
AATCATACTGTATTTAACAATGGAATATCTGATG-----AAAAACATAAAAGACGACGACATATTTAACAACTAACTATC
CAATGC-AAAACATACGAAATATAGT------------------------------------------------------
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>SNPs
-----S---SS------------------------------------------------S-----------S--------
------------------------S------------------S-----------------S------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-----SSSSSSSS------------------S----------------S----------S------------------S-
--------------------------------SS------S------S-S-----------S----------------S-
---------------S-------S-----------------------S---S-----S---SS-----------------
--------------------------------------------------------S-----------------------
---------S-----------------------------------------S----------------------------
---------------------------------------------S------------------------------S---
------------------------------------S-------------------------------------------
---S--------------------SS----S-------------------------------------------------
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------------------------------------------------------------S-------------------
-----S--------------------------------------------------------------------------
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-------------------------SSSSSSSSSSSS-------------------------------------------
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-------------------------------------------------------S-----------S------------
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---------------------------------------------------------------------------S----
-----------------S---S------------SSSSS-----------------------------------------
---------------------------------S----------------SS---------------------------S
--------------S----------------------------------S----------SSSSSSSSSSSSS----S-S
------------------------------------------------S-------------------------------
----S------------------------S------------------------S-------------------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_248
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--------------------------------------------------------------------GCCAGGTTCACG
AGGATACC------------------------------------------------------------------------
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>reverse_2114
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---------------------------------CAGCTACTCCCTCCGTTCTT---------------------------
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