>input_sequence_74221
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-----------------------------------------------------------ACACAGTCACACTCACACTCA
CACATACGGCTAT---TAGGGATTGCGAACGAG-------CAAGTCAATACGAGAGCGCACAGCGCAGCGAGCAGATCAA
CTAAGTGAGCAGCGAGCGAATGGCTCTGGCGCGGTGCAGCGGCGTGCTGGGCAACCCGCTGTCGGTGGACTTCTGGGCGG
ACGCGGACCCTTTCGGCGGCGCCGTCCGCGCCCTGGCCGAGCGCTGCCCCGAGCTCACGAACGTCCGCGTCGACTGGAAG
GAGACGCCAGCCGCGCACGTCTTCACGGCCGACCTCCCCGGCGTCCGGAAGGGCGACGCCAAGGTGGAAGTCGTGGACGG
CGACGTGCTGGTCATCAGCGGCCAGCGCGCCA------AGGAGGAGGAGGAGGGTGGCGGCAAGGACGAGCGGTGGCACC
GGGTGGAGCGCAGCAGCGGCGGGTTCGAGAGGAGGTTCCGTCTGCCGGGGGGCGTGAGGGTAGACGGGGTGAGCGCGTCC
ATGGAGGACGGCGTGCTGACGGTCACCGTGCCCAAGGAGGAAGAGGCCAAGAAGCCGCAGGTCAAGGCCGTGGAGATCCA
AGGCTGCTGAGACCACAAGGGTCATGGTTGGTTAGTCTCAAAAAA-----------------------------------
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>chr3B_1_TraesCS3B01G048600
TCGTGTGTGTGGAGATAACCACAAATTTGGAGACTACTTTTATGAACCTTTTTTGGAATGACACTTTTTATATTTTTATT
TGTTTTAGAAAAACGTGAACATTTTTTAACTTAGTACAAATTTGAAAAGAGGAACATTTTTCTGACAAAGGCAAAAAAAA
ATTAAACACAAATAATATTTGATCTTATGAACAAAATTTGAAAACAGGAACATTTTGTGAAATTATGAATAATTTTTGAA
ATTTTGAACAATATGTGAAATTCCCGAACATTAAAAAAGAAAAAGAAACATGACATGCCGAACGTCTGCGCCGGTTGGGT
GGACAGGCTGCCAGGCGTTTTACGGTGGATATGAGCAGGGTTTACACTAGACTTTGGGTGTTTAGTCTAGGGGTAGGTGT
AATCGGCAATTTCCTTGGAGCATCAGCCATTATCTTCAAACATATCAAAGATCCTTCTACTCTAGAAGCATTGGCAGTAC
GGGAAGGCCTCGATCTAGCAGCTGATCTAAACATCACAAAGGCACATGTTGCTACAGATTGCAAGGCTGTTGCAAGTGAG
ATTGGCAGGAGAAGCACTTCGGCTTATGGGCCTGTGGTTAGAGAAATTGAGTTGCAAGCGTCCTTTTTCATTTCATGTAA
AGTAGTTTATCAGTCTAGGAGCTCGAATTACGATGCTCACAACTTAGCAAAGCATGCTCTAACTCTGAGTGTTGGTCGTC
ATGTTTGGTTAGGCCAGCGTGAAGGCATTTTATTCGTCTCTGTAAACATTGTGACGACGTAATAAAGCTTTGCGAGGTTG
TCTTAAAAAAAAATTTGTTTCTCGCAGTTCTCAAAAAAGAAAAGATGTTTCTCGCAACGCCGAGCATGCTCGCGGCACCA
ACCGCGGGCCACTCTCGAATTCTCTATCAACTCTGGAGGAGTCGCCTGACACATCCAGAGATCACTACACAC--------
-------CCATTTCTCTTATAAAGGCGCACATCCAT----GCACGTAGTACATCGCCTCACACAGTCACACTCACACTCA
CACATACGGCTAT---TAGGGATTGCGAACGAG-------CAAGTCAATACGAGAGCGCACAGCGCAGCGAGCAGATCAA
CTAAGTGAGCAGCGAGCGAATGGCTCTGGCGCGGTGCAGCGGCGTGCTGGGCAACCCGCTGTCGGTGGACTTCTGGGCGG
ACGCGGACCCTTTCGGCGGCGCCGTCCGCGCCCTGGCCGAGCGCTGCCCCGAGCTCACGAACGTCCGCGTCGACTGGAAG
GAGACGCCAGCCGCGCACGTCTTCACGGCCGACCTCCCCGGCGTCCGGAAGGGCGACGCCAAGGTGGAAGTCGTGGACGG
CGACGTGCTGGTCATCAGCGGCCAGCGCGCCA------AGGAGGAGGAGGAGGGTGGCGGCAAGGACGAGCGGTGGCACC
GGGTGGAGCGCAGCAGCGGCGGGTTCGAGAGGAGGTTCCGTCTGCCGGGGGGCGTGAGGGTAGACGGGGTGAGCGCGTCC
ATGGAGGACGGCGTGCTGACGGTCACCGTGCCCAAGGAGGAAGAGGCCAAGAAGCCGCAGGTCAAGGCCGTGGAGATCCA
AGGCTGCTGAGACCACAAGGGTCATGGTTGGTTAGTCTCAAAAAAAAGGGATATACATGGTCGAACTATATGCATATGGC
-TACACACGACCTACGTACGTGCTGTTACACCTA-----------TGTTGTTTGCTAGGTGAGCGTGCTCAGTGTACTTG
TGTGGGATGTGATTGCGAT--------------------AATTCGAGCGAGATATTGTACTCTAAGTTTTGTAACATGCA
TGGGTTGCCACC-TTTGGTTTTTGTCGCGAACGAATACTCCCTCCATTCACAAGTATGCAATGTTGGGGATATTTTAATA
TGAATTACATAAAGACTTAAATGAGTGGAGAAACACGCTAAGGGCTCATTTGATTCAAAGGAATTGCATAGGATTTTTAG
AGGATTTGAACCCTTAGAAATTTTTCCTGTAATGCTTGTTTGATTCGTAAGATTGGCGTCCTTAGGAATTTTTCCATAGT
ATCCATTTGTACTACATTTTGAAGGAAAAATTCCATCCACTCAAACCTCTTTGTAGAATTTCTTTGTTTTTCCTGTGCTA
TCAAACATTCTTTCAAATCCTGTAGGATATTATAGGACATGCCATCATATTCCTACATTTTTCTTATTCCTTCATTTTGA
CAATCCTGCGAATCAAAGAGACCCTAAAACGTGTCTATATACATTTCATTCAACAAAAACTTAAAACATCTTATATCTTT
TAACAGAGTGAGTAGAGGATAGTACCATTCCCAATCTTAAAATCGATCATAAATGGCAATATGCTTATCATCTTTTATTT
TAGGCCACCCCATCTCTGGATT---------------AAAGATTAGCCCACAATGACGGCCAATTTTTTATCTATTTACG
CACCTTCACTCAGAAGTAGCGCCTTAGGGCATCTACAACAGTAGATACTCCGTTTCTTTTAGTCTGCACCATGAAACATC
AACTGTAAATATCAACATTCACGATATGAAATCAACATTTTCAAATCCATCATGAAATGTATTTTCATATTATATAGTTT
AAGTATTGTAGATGTTCATATTTTTTAATATAAATTTGGTCAAACTTTGTGTA
>chr3D_842
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-----------------------------------------AAGACGATTCTCTCAACGCCCAGCACATTCGCGCCACCC
ACCGCGGGCCACTCTTGAACTCTCTATCAAGTCTAGAGGGCTCGT-TGACACATCCAGAAATCACGTCACATCCGCCTCT
TCATCGTCCATTTCTTCTACAAATGCGCACATACATACATGCACGTCCTCCGTCGCCTCG------CACATTCCAACACA
TACATACGGCTACTGCTAGCGATTGCAAGAAAGAACCCTACAAGTTTGAAGGAGAGAGCAACAGCGATCACTCAACGAAC
TAGCGATTC-----AGCGAATGGCTCTGGTGCGGAGCAGCGGCGTGCTCGGCAACCCGCTCTCGGTGGACTTCTGGGCGG
ACGCGGACCCTTTCGGCGGCGCCGTCCGCGCCCTCGCGGAGCGCTGCCCCGTGCTCACCAACGTCCGCGTCGACTGGAAG
GAGACGCCCGCCGCGCACGTCTTCACGGCCGACCTCCCCGGCGTCCGGAAGGGCGACGCCAAGGTGGAGGTCGTGGACGG
CGACGTGCTGGTCATCAGTGGCCAGCGCGCCAGGGAGAAGGAGGAGGAGGAGGGTGGTGGCAAGGACGAGCGGTGGCACC
TGGTGGAGCGCAGCAGCGGCGGGTTCGAGAGGAGGTTCCGTCTGCCGGGGGGCGTGAGGGTGGACGGGGTGAGCGCGTCC
ATGGAGGACGGCGTGCTGACGGTCACCGTGCCTAAGGAGGAAGTGGCCAAGAAACCGCAGGTCAAGGCCGTGGAGATCGA
AGGC---TGAGACCACAAGAATATGTAATAA-----------------GGATATACATGGTTGAACTATATATGCATATG
GTACGTACGACCTACGTACGTGCTGTTCCAACTACTCGTATGTTTTGTTGTTTGCTAGGTGAGCGTGCTCAGCG--CTTG
TGTGGGATGCTGATACCGTATCATGATGCGATTACAATAAATTCGAGCAACATGTTGTACTCTATGTTTTGTAACATGTA
TGGGTTGTCACCCTTTGGTTTTTCTGGCAAACAAATACTCCCTCCATTCACAAATATGCGATGTTGGGGATATTTTAATA
TGAATTACATAAAGACTGAAATGAGTGGAGAAACACGCTAA---------------------------------------
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---------------------------AACGTGTCAATATACATTTCATTTAAAAAAAG-TTAAACCATCTTATATTTTT
GAACAGAGTGAGTAGAGGATAGTACCATTCCCAAAATTAAAATCGACCACAAATGGCAATATGCTTATCATCTTTTATTT
TAGGCCACCCCATCTCTAGATAAAATATCTCTAGATAAAAGATTATCCCACAATGACAGCCTATTTTTGATCCATTTATG
CACCTTCACTTAGGCGTAGCGTCTTAGGGCATCTACCACGGTACATAC--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-----S-------S----SSS-----S----S
---------------S---S----------S---S----SS---SS-------------S-----SS----S--------
---------------SS--S---S--------S-------------SS-S-S-------SSSSSSS----S--SS--S--
S-----------S------S------S-SSS--------------SSSS-S-----S---SSSSSS-S-SSS--SSSS-S
SSSS-SSSSSSSSS---------------S----S-------------S-----------S-------------------
----------------------------------S--S-------------S------S---------------------
--------S-----------------------------------------------------------S-----------
------------------S--------------------------------------S----------------------
S------------------------------------------------------------S------------------
--------------------------------S----------S---------S------------------------S-
----SSS------------SS-SSSSSS-SSSSSSSSSSSSSSSSSSS-------------S---------SSSS--SSS
----SS---------------------S--S-----------------------------------------S-SS----
---------SSSS-S-SS------------------------------S-S--S----------S-------------S-
-------S---------------S-S--S---S--------------------S-----S--------------------
-----------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------S--S----SS-----S----------S---
S---------------------------------SS----------S--S------------------------------
-----------------S---S-----------------------S-----------S---S------S---S-----S-
----------S--SS------S--------------S--S---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_307
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-----------------------------------------------ACATGACATGCCGAACGTCT-------------
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>reverse_1599
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------------------------------------------------------------------------------CA
AGGCTGCTGAGACCACAA--------------------------------------------------------------
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>forward_485
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-----------------------------------------------------------------AAGCATTGGCAGTAC
GGGAA---------------------------------------------------------------------------
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>reverse_1866
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-------------------------CGCGAACGAATACTCCCTCC-----------------------------------
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