>input_sequence_74219
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----------------------------------------------------------------------------ATGG
AGGCTTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGTCCGAG
TCCGAGGTGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGAAGCCACCTCCAGCTCCAGCTCCTC
CGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTGATCTCTGCCCGGACACCGC
G-GTTCCATGGAGGCTCT------ATCTTGATTGAAGCTGTGATCTGACATG-GTGTTCTTTTTCTCTTGGCGCAGGAGG
GGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCGGTGGGCGGCCTGGAGGACCTGGCCAA
GCCGCCGGGCAAGCGGATCAAGACGTCGCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGGTTCGCGCGCC
ACAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGCAGGGCGCCGCCGCTCCGGCCGCTGACA
GCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTGTTCGTTTAG--------------------------
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>chr2B_1_TraesCS2B01G411800
CGGTGAGTAAGTGATTGACCCGTCCTTGACGTGTTCTTCAATCTAATTGATGATCCACCGCTAAATTTGGCCTGTTCGAG
ACATTGCCTCTTGAAAA--------------AAGGCTAGGATCCCGGATGACCTAAAAAGAATTCCATTTG-GAAATAAG
TGGCGTGGTTTCACTTGATAATTCAAGAGTTTGTGCAACGTGTGCTTAAATAGAGTTTTTTTTTTCTTTTTCGAATCACT
TGAATAGAGTG---------------------------------------------------------------------
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------------------TTATGATAGACTCTACCTAGAGTTCGCTGAGATAAGCAAAATTAATTGTATCAGCTTTCGCC
ATCAATACCATATGCCACGAGAGTCTGTCGATAAGAAAATGAAGTAGGCTGCGGTCCAAAACTCAGCCAATCCGAGCATC
GTCAACTGATAAA-GCAGTCTATTTTACTCGACCCGATCCCCCATCAGAGCCGTCAAC-AACGAAGATAAGGATCCGACG
GCCAGAATACGTAGCCAAAGCGTACTGCAACGCCACTATGCAAGAAGCA-AGCATACATCCCCAGGTTCCTCCCGGCTCC
ACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACA--CC----CCACCACAGTGCGCGCGCAGACCCGTCG
CATCTTGCAAAGCCGTGCAAGAAAAATACGTGGATGCCTTATCCCCTCCCCCCACGTCGACCCACTCCACGGAGCCTGCC
TGCCTGCCTGCCGCCGAGATGATAACCATCACGCCCGTATTTATCATCATCTTTTTTAAATTCCTTCTATTCTATTCTAC
TACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCCGCACCCCCCTCCTCTGCCACGGCTCCTCATTCATTCTTATCCT
CCTCCCT--CCGGTACCTTTATAGCTTCCGACCCCCCCGCTCCGTCCTCCAAGC--------------------------
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---------------------------------------------------------TATCATCCTGCTAGCACCCGTGA
ACTCCAGCCATTCACGCTGCGTCGATCGTTTGGTTTCGTGCGTGCGTTGTTTGTGATCGTGTGATCTGTTCGGGAGATGG
AGGCTTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGTCCGAG
TCCGAGGTGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGAAGCCACCTCCAGCTCCAGCTCCTC
CGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTGATCTCTGCCCGGACACCGC
G-GTTCCATGGAGGCTCT------ATCTTGATTGAAGCTGTGATCTGACATG-GTGTTCTTTTTCTCTTGGCGCAGGAGG
GGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCGGTGGGCGGCCTGGAGGACCTGGCCAA
GCCGCCGGGCAAGCGGATCAAGACGTCGCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGGTTCGCGCGCC
ACAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGCAGGGCGCCGCCGCTCCGGCCGCTGACA
GCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTGTTCGTTTAGGAGATTTCGCCCGCAGATTAGTCGTG
TCG---GTTGTGGCGTGCTCAAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGAAGGTGGC
CGGCTGGTCGATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTTCAGTATCCTTTTTTTCTTTTTTTGTGTGTGA
ATACCTTGTTCAGTATCTACTCTCACTGCGCTTATAGTTCCATCACTCGTCTATTGTTCAAGTTAGATTTAATATTAAGT
CTTGACAATAAATTCAGTATATGTTTCCTGCACATAGTAGCCTCTTTGGGACTGGTTCGCTCCATCAAAATCAGCTTCAC
TCCTTTCATATAGGAGTTACAATGGGATTTCACACTAAAGCAGTCTACCGCCTTCAATTCGCCGCGGGTCGCACACCGTC
ACCGGAACCAGTGTCCGAGGGAAGGATTTCACGGTCTGGCCAACTCCACTCGACTCCGGTTCGATCAACTTAGAAGATCG
TTGGCTACTAAAATTAATACTCCCTCCGTTTTAAAATAGATGACCCAACTTTATACTAACTTTTGTAGAAAACCGAAAAG
AAATGCTAATAGGAGGTAACTATGGATATGTCGCTAGAAAACCGAAATGAAATGCTCAAGACAGAAAAGTAGGCAGCTTG
TTAGAGTAGGACTGCTTCGAAAGCGTCGTCGCTAGGGTTCTGGGCCAGCAAGAACACGACGGCTTGGGGGCAGCCCCTAT
TACATGAGATGGATCCATCGACCCCGAATGGGGGCTTAAGTAGCCACACAAAAAAGTTTTCTTTATGTGGAAAATCATAG
TTTTTATAGCTTAATAGTGCTCAGGCAAATCGCCGAAAGCACAAGCAGCCACCTGGGCAGGTACATCAGACTCCCACTCC
ACATAATGGTTCTCAGGGTACATACGACCAATATTGACTAATTCATCTGCTACCGAGTTTGCACTACGACGATATACTCT
AATAATAAATTTGGAGA
>chr2A_1
CGATGAGTAAGTGGCTGACCTGTCCATGACTTGTTCTTCAATCTAATTGACGCTCCACCGCTATATTTGGCGGGTTCGAG
CCATTGCCTCTTGAAAAAGAGTGGTTTGACCAAGGCTAGGATCCCGGATGACTTAAAATAAACCTCCGTTCAGAAATAAG
TGACGTGGTTTCACTTGATAATTCAAGAGTTTGTGCAACGTGTGCTTAAATAGAGTTTTTTTTCCTCGCATC--ATCACT
TGAGTAGAGTTTTAGCGCATCTACAATGCAGATGCTTAAAACGGGCGCTAGGGTGATTTTTCTGGCCGTTTCGTCCGATT
CCTGGCAGAGTCCAGGATTTTGGCTTGCGTGGGCGCAATTCCTGTCGTCAGGCGCTTGCCCTCTTTTTTTCCACATACAA
CGAACTAGGTGGTAGCGGGCGCTAACCTGATAGCCAGAATTAGCATGGAGATCTCAAGAGAATCAACACAAACTACGCCC
ACTACTTTTTTTGCTGCGTTGGGGAGAGCTAACGCTTGCGTACGTCTTTTGAATTGTGAGGCGTCTATAGATTACTAGGA
GCGTTGGAGGCAGGGACTCTTAAACGAGCGCTACACGAAAAAACAATTTCTTTTAATTGCTTAAGCGCCTCAACAAGCGT
TTAGCGTTGAAGATGCCCTTATGGTAGACTCTACCTAGAGTTGGCTGAGATAAGCA-AATTAATTGTATCAGCTTTCTCC
ATCAATACCATATGCCACGAGAGTCTGTCGATAAGAAAATGAAGCAGGCTGCGGTCCCATACTCAGCCAATCCGAGCATG
GTCAACTGATAAA-GCACTCTATTTTACTCGACCCGATCCCCCATCAGAGCCGTCGACAAACAAAGATAAGGATCCAACG
GTCCGAATGCGTAGCCAAAGCGTACTGCAATGGCACTATGCAAG---CATAGCATACATCCCCAGGTTCCTCCCGGCTCC
ACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACA--CCACCCCCACCACAGTGCGCGCGCAGACCCGTCG
CATCCTGCAAAGCCGTGCAAGAAAAACACGTGGATGCCTTATCCCC----------TCGACCCACTCCACGGAGCCTGA-
-------CTGCCGCCGAGATGATAACCATCACGCCCGTATTTATCATCATCGTTTTTTAATTCCTGCTATTCTATTCTGC
TACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCC---------TCCTCTGCCACGGCTCGTCATTCATTCTTATCCT
CCTCCTCCCCCGGTACCTTTATAGCTTCCGAT-CCCCCGCTCCGTCCTCCAAGC--------------------------
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---------------------------------------------------------CATCGTCCTGCTAGCACCCGTGA
ACTCCAGCCATTCACGCTGCGTCGATCGTTTGGTTTGGTTTCGTGCGTTGCTGTGATCGTCTGATCTGCTCGGGAGATGG
AAGCCTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGTCCGAG
TCCGGGATGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGATGCCACCTCCAGCTCCGGCTCCTC
CGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTG--CTCTGCCCGGACACCGC
G-GTTCTTTGTAGGCTCGAGCTCGATCTTGATTGAAGCTGTGGTCTGACATG-GCGTTCTTTTTCTCTTGGCGCAGGAGG
GGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCCGTGGGCGGCCTGGAGGACCTGGCCAA
GCCGCCGGGCAAGCGGATCAAGGCGTCCCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGCTTCGCGCGCC
GCAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGTAGGGCGCCGGCGCTCCGGCCGCTGACG
GCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTCTTCGTTTAGGAGATTTCGCCCGCAGATTAGTCGTG
TCGTCGGTTGTGGCGTGCTCGAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGATGGTGGC
CGGCTGGTCAATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTTC------------------------------
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>chr2D_328
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-----------------------------GATAAGAAAATGAAGCAGGCTGCAGTCGAATACTCCGCCAATCCGAGCATC
GTCAACTGATTAAAGCACTCTATTTTACTCGACCCGATCCCCCATCGGAGCCGTCGAC-GAAAAAGATAAGGATCCGACG
GCCAGAATACGTAGCCAAAGCGTACTGCAACGCCCCCATGCAAG---CA-AGCATACATCCCCAGGTTCCTCCCGGCTCC
ACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACACCCCACCCCCACCACAGTGCGCGCGCAGACCCGTCG
CATCTTGCAAAGCCGTGCAAGAAAAATACGTGGATGCCTTATCCCCTCCCCCCACGTCGACCCACTCCACGGAGCCTGC-
-------CTGCCGCCGAGATGATAACCATCACGCCCGTATTTATCATCATCTTTTTTTAATTCCTTCTATTCTATTCTGC
TACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCCGCACCCCCCTCCTCTGCCACGGCTCGTCATTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCGTCCTGCTAGCACCCGTGA
ACTCCAGCCATTTACGCTGCGTCGATCGTTTCGGGAGAT------CGTTGCTGTGATCGTGTGATCTGCTCGGGAGATGG
AGGCTTACATGATGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGTCCGAG
TCCGAGGTTTCGGCGGCGGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGACGCCACCTCCAGCTCCAGCTCGTC
CGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTGGTCTCTGCCCGGGCACTGC
GAGTTCTTCCGAGGCCCGGCCTTGATC----TTGAAGCTGTGGTCTGACATGTGTGTTCTTTTTCTCTTGCCGCAGGAGG
GGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCCGTTGGCGGCCTGGAGGACCTGGCCAA
GCCGCCGGGCAAGCGGATCAAGACGTCGCGGAGCTGCGAGGTCGGGTTGCAGGACGCGCACCGCCGGCGGTTCGCGCGCC
ACAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGCAGGGCGCCGGCGCTCCGGCCGCTGACG
GCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTCTTCGTTTAGGAGATTTCGCCCGCAGATTAGTCGTG
TCG---GTTGTGGCGTGCTCGAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGAAGGTGGC
CGGCTGGTCGATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTG-------------------------------
----------CAGTATCTACTCTCAGTGCGCTTATAGTTTCATCACTCGTCTATTGTTCAAGTTAGATTTAGTAT-----
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>SNPs
--S----------SS-----S----S----S-------------------S-S----------S-------SS-------
S---------------------------------------------------S-----SS--SSS-SS--S---------
--S------------------------------------------------------------SSSSSSS--SS------
---S------S---------------------------------------------------------------------
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-----------------------S------------------S-------------S--------------------S--
--------------------------------------------S--------------S--------------------
-----------------S-------------------------------------S------S-----------------
--------------------------------------------SSS---------------------------------
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-------------------------------------------------------------------------------S
SSSSSSS--------------------------------------------------S--------------------S-
--------------------------------------------------------------S-----------------
-----SS------------------------SS-----------------------------------------------
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---------------------------------------------------------S---S------------------
------------------------------------S--SSSSSSSS-SSS-----------------S-----------
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--------------------------------------------------------S-----------------------
-------------------------------------------------------------S------------------
------SS---------S------------------------S-------------------------------------
-----------------------------------------------------S--------------------------
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--------------------------------------------------------------S----------------S
--------------------------------------------S-----------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------S-------------S-------------------------------S---SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_73
-----------------------------------------------------TCCACCGCTAAATTTGGCCT-------
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>reverse_2523
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------------------------------------------TCTTTGGGACTGGTTCGCTC------------------
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