>input_sequence_74212
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-----------------ATGGCGTCCTCTTCTGCCGCTCTCCTCGCGGTGCTCGTCGTCGTGAGCTGCGCGGGCATGGCT
GCGGCCACGTCGTACACCGTCGGCGACACCAAGGGCTGGGTGACCGGCGTCGACTACTCCGGCTGGACCAGCGGCAAGTC
GTTCGCCGTCGGCGACACGCTAGGTGAGCGATCGAGCTCTTGGCCCTTCTTGGCACCAACACTTGCTAGCCATAGTCGCA
AACGCCAGTATACTGCATGCGTTGTGCGTACGTGTTGAAACT-------AAAACTGTTGTCTATGCATTGGGAATTTTGC
CCTGCAGTGTTCAGCTACGCGAGCAAGGTGCACACGGTGACGGAGGTGAGCCAGGGCGGCTACACGTCCTGCTCCGGGAG
CAACGCGCTGGCCAACTTCGACAGCGGCGCCACCACCGTCACGCTCGCGACCCCCGGCACGCACTACTACATCTGCAACA
TCCCCGGCCACTGCGCCAGCGGCATGAAGCTCGCCGTCACCGTCGCCGGGGGCGGCTCGTCCCCGGGAGG----------
--------CTCC------------------GCCGGCGGCTCCCTGGCCCCGGCGATGGGCGCCGTCGTCGCCGCGGCGGC
GGGGGCTCTGATCAAGGTGGCGCTGTTCTGA-------------------------------------------------
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>chr5D_1_TraesCS5D01G255500
CATCATAGGAGCAGGAAAACCAACTAAAACTAGCCAATTGCCTTTGCTGTTCCTACGCTTTGGCATCGCATCGGTTCCCT
GACCAGCCAGGCGGAGCACCCTACTACTCATAATGTTTGCTCATTCAAAAGCCAACG-AAACCCCGGCCCTCCTTTTGCG
TTCTCAATGCGCCCCAGGTCTTGATCCCTCGATCATTTGTCCAAAAGCTCGCAGAAAATTCACACGTTCCGGTCCTAGAG
AAGTGATATATACTGCTATGTGAGTGAGGCTGCCAGCGCGCGAACGGCGGAAATGATACTGCGCGGAGATGCCGACCAGC
TAGGCTCCGGCGGCGCTTTGAGTGAGCCGCACCCAAGGCATTCCGTCCGTCCGGTTCCATTCCCTTCACGGTTCCCACAC
CGCACCCACACCGAAAGCATTTTGTCGACGAGAAATCATATCTCTATCTCTAGTAGTAGTACTTTAAAAAATTGGGTTAC
TTTTTCTGTCGGTAAGAACACTTCGTCAACTAATTATTTTCTCTCCCACCACATCTCTTGATCGTTTTTTTTCCGTCACT
TAAATTTACTTACCAAGCCGCACCACGGTAATATGCGCATGTAGACATTTATTTACACAATCGCATTAATATAAATAGAT
AAATCACTGACATGATATGATATACATTTATTTAATCACATTAATATAGAAGGTAATCACGAACTAACGTGTTAGAATAG
TTATATCCCGTGGTAGCGGACGGGAATTGTTCATAAAAGGAACCTGTCATTGGCTACTAGTTCCTTCTCTAAACTT----
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---------------------------------------------TTTCGCACCGGAAATTTTGCAAGGGGATGTGGGGA
TCTGATGTGTATAAATAGACCTCTCAACCTCCGGTCCGGTGTGCGACACCGCTACATCCACAGTGCGAA--GGGTTTGGT
GACTGGTACATC---CATCCACCGTCATATATCCTTTGCATCCTTTGCAGTGCCAAC--CTCTCGTTCTCCCTCTCCTTC
CTCTAATCGTCGATCATATGGCGTCCTCTTCTGCCGCTCTCCTCGCGGTGCTCGTCGTCGTGAGCTGCGCGGGCATGGCT
GCGGCCACGTCGTACACCGTCGGCGACACCAAGGGCTGGGTGACCGGCGTCGACTACTCCGGCTGGACCAGCGGCAAGTC
GTTCGCCGTCGGCGACACGCTAGGTGAGCGATCGAGCTCTTGGCCCTTCTTGGCACCAACACTTGCTAGCCATAGTCGCA
AACGCCAGTATACTGCATGCGTTGTGCGTACGTGTTGAAACT-------AAAACTGTTGTCTATGCATTGGGAATTTTGC
CCTGCAGTGTTCAGCTACGCGAGCAAGGTGCACACGGTGACGGAGGTGAGCCAGGGCGGCTACACGTCCTGCTCCGGGAG
CAACGCGCTGGCCAACTTCGACAGCGGCGCCACCACCGTCACGCTCGCGACCCCCGGCACGCACTACTACATCTGCAACA
TCCCCGGCCACTGCGCCAGCGGCATGAAGCTCGCCGTCACCGTCGCCGGGGGCGGCTCGTCCCCGGGAGG----------
--------CTCC------------------GCCGGCGGCTCCCTGGCCCCGGCGATGGGCGCCGTCGTCGCCGCGGCGGC
GGGGGCTCTGATCAAGGTGGCGCTGTTCTGA-------------ACGTCGGCGGGCGTGCCAGGGCAGAGGCAGTGCAGG
TCATCGGTCGCTTTCGAGGATTTCGATCGTCTTAATTT------------------------------------------
CCGCTAAGTTTTTTGGGGGGCGCCGTTCTTTGACGCGCACTCGTGTCGTGTATGCACGTTGGTGTGTGTGCCTCCCGG--
TTTTTCGTCGTGCCTGAGCATTATGGATTGTGCGTTTTGTGACGAAATATTTTCTTTTGCTGAAGAGTTCTGCGTAATAA
AAGTACTTTGTGCAAG------------------------------AAAAGTCTCTTGTGGTCAAGAGAC----------
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------------AAGAGTCGCAATCGTTATCGACAACACGAGAACTAGCATCATTGTGCTTCAACCACTTCTTTACGTCC
ACATGCGAA-CGATTATTTAGGCTGTTGTCGTCGAGGACCGATTATTGGCACACTAGGGTTTTTATTTTTGAAAACAAAT
GGCAAAAGATCTGCACATTTCATTGATTAAGGTAAATGGG--TTTTAAGTACAAACAAACAATGGCCATAGTCCATACAA
AGAAACAGAAATGATAA-AAAAAACTAACGTCGGTATTTTAGGATTTGGGACCGAACGCCCTTTTCGCCATTGGATATTG
AGCACGCATCTTAAAGCATAAGACCACAGCCATGTCGGTGAAGGAGATTGTTCGGGAGAAGGCAAAGTCGTCACAAAGGC
ACAGATCCACTCTCTTCGCACTACGCA-CCCCTTCTCTCTCATGTCGCCAACTTCTCCCTTATCATCTTTCCTCCCACCG
ACCACACTGACGGCCTCGACCCTCCCTCTCTGCGCTCCCTGTCGGCGTAGGCGGGCTAGAGGTGGTCGCGGTGTGGAGGA
GGAGCGTGGCGGGGGAGGTCAAGCGGCGGAGCCGACGCCGACGCGGCGCCGCCTGCATTTTTATTCAGATGGCAAGATGG
CCGTGATTTTTAGGGAACAAAACTAATAGGTTAGTTTTTTGTCTGCCATGGCAAATTTTGTCTCAACTTTACATTTTTAG
GGGAAAAAATAATTCAGCAACTTGC
>chr5A_1
CATCATAGGAGCAGGAAAACCAACTAAAACTAGCCCATTGCCTTTGCTGTTCCTGCGCTTTGGCATCGCATCGGTTCCCT
GACCAGCCAGGCGGAGCACCCTACCACTGATAATGTTTGTTCATTCAAAAGCCAACGAAAACCCCGGCCCTCCTTTTGCG
TTCTCGATGCGCCCCAGGTCTTGATCCCTCGATCATTTGCCCAAAAGCTGGCAGAAAATTCACACGTTTCAGTCCTAGAC
AAGTGATATATACTGCTATGTGAGTGAGGCCGCCAGCTCGCGAGCGGCGGAAATGATACTGCGCCGAGATGCCGACCAGC
TAGGCGCCGGCGGCGCTTTGAGTGAGCCGCACCCAAGGCATTCCGTCCGTCCGGTTCCATTCCCTTCACGGTTCACACGC
TGCACCCACACCGAAAGCATTTTGTCGACGAGAAACCATATCAGCG----------------------------------
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----------------------------------AAAAGGGAGCTGTCACCGGCTACTGGTTCTTTCTTTAAACTTTATA
CTTAGATAATTGTTCGTGCGTTCCAACATGAGCATAGACATTCTAGTAGATTAGACCGTGATTGCACGCCTGCACTTTAA
TGCACTAAAATTTTAGCAAAATTTTGTACGCAATCACCATGATTTATCTGTCATCTTATTGTTTAGAACTTATATTGAGC
AAGTTCTTATATTCAATCATCATAATTTACATGTCATCTTCTTGATAACACTTGTATTTGATAAAAGCTTACCAAAGAAA
TTATTGTTTTCTTTTAGAAAGTTAATAAGACATGATACGGTTAAGTTGATTTTAGAAAAATATAAGATAGAAGAAAATTC
AAACATGGAAGGCAGAGAGAGAGAAAGAGAGAAGGGATGGGGGACGTGAGATTGGACGAAGGAAAGGTGAAACGGAAAGC
TTATGTTTTTTAGTAAGTAGAGAGATGGAGATTTAGTAGTAGAGATTTCGCACCGGAAATTATGAGAGGGGACGTGGAGA
TCTGATGTGTATAAATAGACCTCTCAACCTCCGGTCCGTTGTGCGACACCGCTACATCCACAGTGCGAAAGGGTTTGGGT
GAGTGGTAACA--TACATCCATCGTCATATATCCTTTGCATCCTTTCCAGTGCCAACCTCTCTCGTTCGCACTCTCCTTC
CTCATATCGTCGACCATATGGCGTCCTCCTCTGCCGCTCTCCTCGCGGTGCTCGTCGTCGCGGGCTGCGCGGGCATGGCC
GCGGCCGTGTCGTACACCGTCGGCGAAGCGAAGGGCTGGGTGACCGGCGTCGACTACTCCGGCTGGACCAGCGGCAAGTC
GTTCGCCGTCGGCGACACGCTAGGTGAGCGACCGAGCTCTTCGCCGTCGGTGACAAGCACG-------------------
------AGTATACTGCATGCACGTAC--TACGTGTTGAAATTGTG-----------------------TTGGAATTTTGG
CTTGCAGTGTTCAGCTACGTGAGCAAAGTGCACACGGTGACGGAGGTGAGCCAGGGCGGCTACACGTCCTGCTCCGGCAG
CAACGCGCTGGCCAAAGACGACAGCGGCGCCACCACCGTCACGCTCGCGACCCCCGGCACGCACTACTACATCTGCAACA
TCCCCGGCCACTGCGCCAGCGGCATGAAGCTCGCCGTCACCGTCGCCGGGGGCGGCTCGTCCGCGGGAGGCTCCACCCCG
TCCGGCGCCTCC------------------GCCGGGGGCTCCCTGGCCCCGGCGATGGGCGCCGTCGTCGCCGCGGCGGC
GGGGGCTCTGCTCAAGGTGGCGCTGTTCTGA-------------ACGTCGGCGGGCGTGCCAGGGCAGAGGCAGTGCAGG
TCATCGGTCGCTTTCGAGGATTTCGGTCGTCTTAATTT------------------------------------------
C-----------------------------------------GTGTCGTGTTTGCACGTTGGTCTGCGTGCCTCCCGGGG
TTTGTGGTCGTGCCAGAGCATTATGGATTGTGCGTTGTGACGAATGCTTTCTATCCCTGACAGTTCTTTT--CGTAATAA
GAATACTTTGTGCAAGAAAAAGTCTCTTTTTTTTGCGGGAACAAGAAAAAGTCTCTTGTGGTCAAGAGATAAGAGCATCT
CCAACCGGCGCCAGTCGGGCCGCGCGCAAAAAACACATATGCCGCGCGCGCATCGCCTGATTTGGCGCGACGCGCAGCGC
TGGCTCTAGTAACCGCGCTAAAATGCAGCGCGCGGGCGCCGCTCCAGCAGCGCGGAAAAATGCGGCGCGCGCGACGCGCA
CAAACAACATATGCATTCGAAACCAAAAGCAAAAATATCAAAAACAAACAAAAAATAAATAGTTCAATTTTGTTTATTAC
AACTCAAACAAACAGTTTATCGTTCAATACAACAAATAGTGCAATTCAACACAACAAATAGTTCAACAATACAATAACGA
ACGCACAAATCATGATGCTCTTTGTCGTCCATTCCATACCCACCACTCCTCAATGAGATCCTTCTGAAGATCATTATGCA
CTGCGGGACGTTGAATGGCATGATAGGAGGCAACAAAACGGGCCACCCTTTCAGCCCTCCGTCGCACTCGCACCGGATGT
CCCAAGAGCTCATACTGAGAGTAGTCTACATCTTGGCCACGCTCATTCTTGATGATCATGTTGTGCATGATCACACAAGC
GTGCATTATGTACCAAAGCATCTTCTGATCCCAAAATCTAGCCGGTCCTCTCACAATAGCAAATTGGGCTTGCAAAATCC
CAAAAGCTCTCTCCACATCTTTTCTAGCCGCCGCCTGAGCATTATGGAAATCAAGATTTTTCTTACCTTCTGGCTTTTTC
AACGGTTTGACAAAGGTTTGCCACTTTGGATAGATGCCATCCGCTAGATAATAGCCATAGTTGTATGTACGGCCATTTGC
TACAAACTGCACCGGTGGCAACTTCCCATTTGCAATCTTACTCATCAGTGGTGACCGGTTGACAACATTGATGTCATTCA
AAGATCCAGGCATTCCAAAGAATGCATGCCAAATCCAAGTCTCTTGATCGGCCACCGCTTCAAGGATTATAGTGAAACCC
TTTTTTGGCCGTGGAATTACCCATGCCATGCCTTCGGACAATTCTTCCAACTCCAATGCATGCAATCTATTGAGCCAAGC
ATGCCAGGAAAGCCGCGAGCTTTGTTCATCGTCAAAAGCCTTGCGACGTCTTCAGCGGTGGGAGATCTCAAATACTCCTC
GCCAAACACTTGCACAATTCCGACCGCGAAGCGCTCGACACACATGATAGCTTGGCTCTCACCCATAGCCAACTGATTAT
CAACTAGATCAGCCGGTATATCGTATGCCAACATACACAAAGCGGCTGTCACCTTCTGAAAAGGTGCTATGCCCGAGCTC
TCCGGCGGCATTCCTCCTTTGCTGAAAAAAGCGGTCATGGCTCACTAGTTTCTTTGCAATGCGCCTGAACAACTCGGTGC
TCATCCTAAACCGGCGACGAAAATACGACTCGGGGTATGTAGGATTCTCCGCAAAATAATGCCTGATCAATCTGTTGTGG
GCATCGATCCTATCCCTCCAAATTTTTTGCCGACCCATAACCGAACCACCGTGTTTCGGTTTTTTATTAATATGCATAGC
TAGGATCATCGCAAGATCCTCCTCCTCTTCCATATCAAATTCTTCTTCGGAAGAATCATACGACGAACTCATCTACAATG
TTGAATACTATGCTATAAATAAAAAACTACAATCAACATGCACGAAATTCATGGCTTTTAAGCAATACATACCTTCTAGG
CGTTTTGTCGAACACCTAGCGGGTGCCGAGCGGCAGCGGGCGCGCGGGCGCTGTTCGTCGGCGGACCAGCACGCGCGCGG
GGAGGCGGGCCTAGAGAGGGGCCGGAGAAAGCGCGCGCGGGGCGGGGATAGGCCGGGGAAGCGCCGGAACGGTCGCCGGG
TGGCGCGGTCGGCGGCGGCGGCGCGGCTGGAGGGGGGTGGGAGGTGCGAGCGAGCGCGCGAGAGTCCAGCGCGCGGGAGC
GGGCGCAGCAAATAAGCGGCGCGCGATTGAGTTTCGGCCCACGCGCTGGACTACGTATGCCGCGCGCGCGGTTTTCGCGC
GCCCGTTGAAGCAGCTCTTCCGGTTGCGCGCGCGTTAAAAGAGGGGATTTTACGGCGCGGCGCTAGTTTGGCGCGCCTGT
TGAAGATGCTCTAAGAGTCGCAATCGTTATCGACGACACAAGAACGCGCATCATTGTGCTTCAACCACTTCTTTACGGCC
ACATGCGAACCGATTATTTAGGCTCTTATCGTCGAGGACCGATTATTGGCACACTAGGGTTTTTAGTTTTGGAAACAGAT
GGCAAAAGATTTGCACGTTTCATTGATTAAGGAGAATTGG--TTTTAAGTACAAACAAACAATGGCCATAGCCCATACTA
AGGCACAGAAATGATAATAAAAAACTGACGTCGGTATTTTAGGATTTGGGACTGAACGTCCTTTTCACCATTGGATTTTG
AGCACGCATCTTAAAG-ATAAGACCACAACCATGTATGCGGAGGAGATTGTTCGGGAAAAAGCAAAGTCATCACGAACGA
ACAGATCCACTCTCTTCGCACTACACATCCCCTTCTCTCTCACGTCGCCAACTCCTCCCTTATCATCTTTCTTCCCACCG
ACCACACCGACAGCCTCGGCCCTCCCTCTCTGCGCTCCCTGTCGGCAGAGGCGGGCTCAAGGTGGTCGTGGTGTGGAGGA
GGAGTGCGGCGGGGGAGGTCAAGCGGCGGAGCCGACACCGACGCGGTGTTGCCTGCATTTTTATTCAGATGGCAAGATTG
CCATGATTTTTAGGGAACAAAGCTAATAGGTTAGTTTTTTGTTTCCATG-------------------------------
-------------------------
>chr5B_805
GGAAACTTTTGTT-------------------------------------------------------------------
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------------------------------------------------------------------AGGGGACGTGGGGA
TCTGATGTGTATAAATAGACCTCTCAACCTCCGGTCCGGTGTGCGACACCGCTACATCCACAGTGCT---GGGGTTTGGT
GACTGGTACATACTACATCCATCGTCATATATCCTTTGCCTCCTTTCCAGTGCCAAC--CTCTCG------CTCTCGCTC
CTCTGATCGTCGATCACATGGCGTCCTCCTCTGCCGCTCTCCTCGCGCTGCTCGTCGTCGTGAGCTGCGCCGGCATGGCC
GCGGCCGTGTCATACACCGTCGGCGACGAGAAGGGCTGGGTGACCGGCGTCGACTACTCCGGCTGGACTAGCGGCAAGTC
GTTCGCCGTCGGCGACACGCTAGGTGAGCGATCGAGCTCTTGGCCCTCCTTGGCACCACCACTTGCCAGCCATAGTCGCA
AACGCCAATATGCTGCATGCGTTGTGCGTACGTGTTGAAACTTGAAACTAAAACTGTTTTCAATGCGTTTGGAATTTTGC
CTTGCAGTGTTCAGCTACGTGAGCAAGGTGCACACGGTGACGGAGGTGAGCCAGGGCGGCTACACGTCCTGCTCCGGGAG
CAACGCAGTGGCCAGCGACGACAGCGGCGCCACCACCGTCACGCTCGCGACCCCCGGCACGCACTACTACATCTGCAACA
TCCCGGGCCACTGCGCCAGCGGCATGAAGCTCGCGGTCACCGTCACCGGGGGCGGCTCGTCCACGGGAGG----------
--------CTCCACCCCGTCCGGCGCCTCCGCCGGAGGCACCCTGGTCCCGGCGATGGGCGCCGTCGTCGCCGCGGCGGC
GGGGGCTCTGGTCCAGGTGGCGCTGTTCTGACGGAGCGCGCCGTACGTCGGCGGGCGTGCCAGGGCAGATTCAGTGCAGG
TCATCGGTCGCTTTCGAGGATTTCAGTCGTCTTAATTTGCGTTACGTTTTTTTTGGGGGCGCCGTTCTTTAACGCGCACT
C-----------------------------------------GTGTCGTGTATGCACGTTGGGCTGTGTGCCTCCCGG--
TTTCTCGTCGTGCCTGAGCATTATGGATTGTGCGTTTTGTGACGAAATGTTTTCTTTTGATGAAGAGTTCTGCGTAATAA
AAGTACTTTGTGCAAG------------------------------GAAAGTCTCTTGTGGTCAAGAGATAAGAG-----
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-----------------TCGCCATCGTTATCGACAACACGAGAACTAGCATCATTGTGCTTCAACCACTTCTTTACGGCC
ACATGCGAACCGATTATTTAGGCTCTTATCGTCGAGGACCGATCATTGGCACACTAGGGTTTTTATTTTTCAAATCAAAT
GGCAAAAGATTTGCACGTTTCATTGATTAAGGATAATGGGTTTTTTAAGTACAAACAAACAATGGCCATAGCCCATACAA
AGAAACATAAATGATG---AAAGACTGACGTCGGTATTTTAGGACTTGGGACCGAACAGTCCCTTTT-------------
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>SNPs
-----------------------------------S------------------S-------------------------
------------------------S---S----------S----------------------------------------
-----S---------------------------------S---------S------------------S-S--------S
------------------------------S------S-----S--------------------S---------------
-----S--------------------------------------------------------------------S---S-
S----------------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-S------SS-------S----S----S-----------
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-------------------------------------------------------------S--SS------S-------
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-----------S---------S------------------------S---------------------S-S---------
----S-----------------------S--------------------------------------------------S
------SS-------------------S-S--------------------------------------------------
-----------------------------------------------S------------------S-------------
----------------------------------------------------------S--S----S--S----------
-S-----------------S------------------------------------------------------------
----------------SS--------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------S--------------------------------------------
----------S---------------------------------------------------------------------
-------------------------S------------------------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S----------------
---S--------------------------------------------S----------S--------------------
---------------------------------------------------------------------S----------
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-----------------------------------------------------------------------------S--
------------------------S--S----------------------------------------------------
----------S-----S---------------SS-------------------------------------S--------
--------------------------S-------------------------------S-------S---------S---
----------------S-----------S------SS-S-S----------------S--S--------S----S--S-S
------------------------S-----------------S----------S-----------------S--------
-------S---S------S---------------------------SS---------SS---------S-----------
----S-S-----------------------------S---------S-SS----------------------------S-
--S------------------S--------------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1429
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-------------------------------------------------CAGTGCCAACCTCTCGTTCT-----------
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>reverse_4909
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----------------------------GCCATGTCGGTGAAGGAGAT--------------------------------
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