>input_sequence_74207
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---------------------------ATGCAGGCGCACCCGGACAGG---------GTCGCCGTCGCCGTCTTCGCCTC
CGCCGCCATGCCGGCCGCCGGGAAGCCCCTCAAGTTCGTCTCCGAACAGGTGAGTCCGCGCACGCCTGCCCTCTCGACCC
ACACCCCCACG---CCACCATGAACGAACCTAACACACTCGATGTCTCGATATTACAGTTTGCGCAAGAAAGGGGCCCGG
GTTTCTTCATGGACAGCGTGATCGAGACCACCGGCGGCGACGACCCGGAGCGCGCTTGCAAGACGTTCCTGCTG------
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-------------------------------------------------------GGGCCGGAGTACATGGCGCAGCGGC
TGTATCAGCTCAGCCCGCCGGAGGACCTGACGCTGGCGACGATGCTGGTGAGGCCGTCGCGGCAGTTCGTGGACGACGCC
GCGATGAACGGGGAGGGGGTTCTCACGGCGGAGAGGTACGGCGCGGTGAGCCGCGTGTACATCATCGCCGAGGAGGACGT
CTCGTGGTCGCCGGAGTTCCAGCGGCGGATGGCGTCGTGGAACCCCGGCACGGAGGTGCGGGGGCTGGCGGGGGCCGATC
ACATGCCCATGTTCTCCAAGCCCAGGGAGCTCTCGGACCTCCTCGTGGAGATAGCCGACAAGTACATCTGA---------
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>chr3A_1_TraesCS3A01G455000
TTTTGAATCTTCTCTGCCATT---TCGTTCCAGATCATGGAGGAAACCGCGACGGACGCCGCCACGGACAGCGTGCCCGC
GGTGATCGGCGCGGCGGAAACGTTTCTCCTGGGCCCCGAGCGCCTGTCGCGGCGGCTGTACCAGCGAAGCTCGGCCGAGG
ACCTGGCGCTGGCGACGGCGCTGGTGAGGCCGGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGACCTGACC
GCCGACAGGTACGGCGCGGTGAGGCGCGCGTGCGTGGTCACCGAGGAGGACGCGACGTGGGCGGCGGAGTCGCAGCGCCG
GATGGCCTCGCGTTGCCCCGGCGTGGAGGTGGCGGCCGTCGAGGGTGCCGACCACATGCCCATGCTCTCCACGCCCCACC
AGCTCGCCGCGATCCTCATGGAGATCGCCGACAAGCACATCTGAGCTAGCCATCAGCTCATCGTCGGTACAGGCTGCCGT
TTGCCGTTCGCCGGCG------------------------------ACAGCTGAAGAAGCAGAGCATCTCGCTGTCATAT
GGACTAGCAGTGCATTATTCCAAAGCCTTGTCACAATCAAAAA--TACTTTTCGTACAGCACAACCACCACTCGTACAAA
AGTGGAGAAATGGACGTGATCATGTGGCGTGGACTACCACTGCACTTGTCCA----------------------GGGGAT
TTGTACCAGCGAGAGAGAGCTCGCCGGCCCGTGAACCGAGAGG----CCGATGGAGAGCGCGGCCGGCGGGGAGAG----
--GCGGGGGCACCGGTTCGTGCTCGTGCACGGCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCGCGGCCCTGCG
GTCCGCCGGCCACCGCGTCGACGCGCTCGACATGGCCGCGTGCGGCGCCAGGCCGGGGCGCGCCGAGGAGGTGGGCTCGT
TCGAGGAGTACAGCCGGCCGCTGCTGGACTTGCTGGCGGCCCTGTCGCCGGGGGAGAAGGCGGTGCTGGTGGGCCACAGC
TACGGCGGCTAGAGCCTGGCGCTGGCCATGCAGGCGCACCCGGACAGG---------GTCGCCGTCGCCGTCTTCGCCTC
CGCCGCCATGCCGGCCGCCGGGAAGCCCCTCAAGTTCGTCTCCGAACAGGTGAGTCCGCGCACGCCTGCCCTCTCGACCC
ACACCCCCACG---CCACCATGAACGAACCTAACACACTCGATGTCTCGATATTACAGTTTGCGCAAGAAAGGGGCCCGG
GTTTCTTCATGGACAGCGTGATCGAGACCACCGGCGGCGACGACCCGGAGCGCGCTTGCAAGACGTTCCTGCTG------
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-------------------------------------------------------GGGCCGGAGTACATGGCGCAGCGGC
TGTATCAGCTCAGCCCGCCGGAGGACCTGACGCTGGCGACGATGCTGGTGAGGCCGTCGCGGCAGTTCGTGGACGACGCC
GCGATGAACGGGGAGGGGGTTCTCACGGCGGAGAGGTACGGCGCGGTGAGCCGCGTGTACATCATCGCCGAGGAGGACGT
CTCGTGGTCGCCGGAGTTCCAGCGGCGGATGGCGTCGTGGAACCCCGGCACGGAGGTGCGGGGGCTGGCGGGGGCCGATC
ACATGCCCATGTTCTCCAAGCCCAGGGAGCTCTCGGACCTCCTCGTGGAGATAGCCGACAAGTACATCTGAATCAG----
-CAGCAAACTTCATCTTCAGTTATGAATTCTGATTTCTGAATAATTC-TTCAGAGAAATCAAGAGATGTTTGGTTAAAAG
TTCAAACCGCAGCATCATCGAATAAGAATATGTTCTCTGTCCAAACAATAAGTCCATATATGTGTGTAACAACAATATTA
TGATGCAGAATCATTTCTGTTAAATTTCTCTTGATCTTGACAAAACCTTGACACCCAACACATTACGATAAAAAGAAAAC
TTCAGACATGAATGTCACCAAGAACATGGATACAG---A--------------------AATATTTATTTATGTTACATT
TCACTCCTTGGCTAAATAAAACCATGACCTACCGGAGCGAAATTACAAGCTAGTGGATAAAAGGT-CCAAGGGTCATGGA
TACAAAACTGTGTGTGTATCTACAAGATCAAACATCAACCATTAGGCTGAAGGAATCCGCCATCGCAAAGAACTCTTCCT
TAACCGATCTCCATGCCGACTCCGGCGCCTGGGCATTCAAGGTGTACAGTTTGCCGTCTCTCGCGCAGCAGACCGCCACA
TTGTGCCGTCGAAAAGAAGGGCTTTCGACTCGGAACTCTAGCTTGTAGTATTTCACATTGTTCACGGTGTCTTCTCTCAA
TGCAGCATCAATGAGAGTAGCACTGATATCTGGGTTCCGTTTTGTCCTTGCGATCCTTCTCAGCACCACTTCCCCAACAT
CTTTAGGACCGCCGAAAGACTCGATCCTGTTCCAAGCATTCCAATGCTACTTTAGAAAACACTTAAAATAATGGCACTAC
AATGA-ACTCATTTTCATTGAAATATTAACCGGCTTATGTGACATGAATT-TTACGATCATGTTTTACACAGGAACTCAA
GTGTACTAGCAGTAGGATGATTT----CTTTCGCTAGGATAGAAGTGCCAATACTCATTTCATTTAGGAACATGAATGAA
ATATAAGTATACTTACGAGAAGTCTTGTGGGACGGTTGATACAATGACGCTGACATTGAGCTCCCCG
>chr3B_1
TTTTGAATCATTTCTGCTGATCTCTCGTTCCAGATCATGGAGGAAACGGCGACGGACTCCGCCACGGACAGCGTACCGGC
CGTGACCGGCGGGGCGGAAACGTTTCTCCTGGGCCCCGAGCGCCTGTCACGGCGTCTGTACCAGCGAAGCTCGGCCGAGG
ACCTGGCGCTGGCGACGGCGCTGGTGAGGCCGGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGTCCTGACC
GCCGACAGGTACGGCGCGGTGAGGCGCGCGTGCGTGGTCACCGAGGAGGACGCGACTTGGGCGGCGGAGTCGCAGCGCCG
GATGGCGTCGCGGTGTCCCGGCGTGGAGGTGGCGGCCGTCGAGGGTGCCGACCACATGCCCATGTTCTCCACGCCCCACC
GGCTCGCGGCGGTCCTCATGGAGATCGCCGACAAGTACATCTGAGCTAGACATCAGCTCATCGCCGGTACTGGCTGCCGT
TTGCCATTGTTCGGCACTGATTCTTGCGCCGAAAGGAGAATCATCAACAGCTAAAAAAGCAGAGCATCTCGCTATCTTAT
GAACTGTACCAATAATAATTAATAA-------ACAATCGAAAA--TACTTTTCATACATCTCAACCACCACTCGTAGAAA
AGTGGAGAAATGGACGTGATCATGTCGCGTGGACTAAACTAGTCCAAGA-------------------------------
-------------AAAGAGCTCGGCGGAC---------------AAAACGATGGAGAGCGCAGCCGGCGGGGAGCTACGG
C------GGCACCGGTTCGTGCTCGTGCACGGCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCACGGCCCTGCG
GTCCGCTGGTCACCGCGTCGACGCGCTCGACATGGCCGCGTGCGGCGCCAGGCCCGGGCGCGCGGAGGAGGTGGGCTCGT
TCGAGGAGTACAGCCGGCCGCTGCTGGACGCGCTGGCGGCGCTGCCGACGGGGGAGAAGGCGGTGCTGGTGGGCCACATC
TACGGCGGCCAGAGCCTGGCGCTGGCCATGCAGGCGCACCCGGACAGG---------G---------CCGCCTTCGCCTC
CGCCGCCATGCCGGCCGCCGGGAAGCCCCTCAAGTTCGTCTCTGAACAGGTGAGCCC---CGCGCGCGCCCACTCGATCC
ACACCTCTTCTCCCCCACCATGAACGAACCTAACACACTCGAT--------ATTACAGTTCGCGCAAGAAAGGGGCCCGG
GTTTCTTCATGGACAGCGTGATCGAGACCACCTCCGGCGACGACCCGCAACGCCCTTGCAAGACGTTCCTGCTCGGGCCG
GAGCAGTCGCGGAGCCAGAACTTTTCTAGAGCCTGGGCAAGCTTGAGCCTATGTGTCTAATGTCGAAATTAAAATGTGAT
GTTCTGATAGATACAACATATAAAATAGCCCCGAACTTCGTTACCAGAAATCATTAATAACAAAAAAAAACGAATTTAAA
AACAAGGTCATAAAAATATAGTTTCAAAGTGGACTAATATGTAACATATCGATATTCAGTTTCATAGACCAAAATGAATT
TGAGACTTGACAATGAAAGTCATAGAAGCAGGCCAGCGGACATGGAGTATTTGATCCCGAGCTCACATGCTCCCGCATGA
ACAGTACAATCCAAAAAAATAGTAAATTTTTTTCAAAAAATCTGATTTTTTTGTGATGAACATTGATGGATTTTCTAACT
GCGTGCAAAATTTCAGGTTGACATTCGTGGAGGTCTAGGTAAAAATATTAAAATCGATGGTCCAAAAAAACTATTGTTGG
AAGCATTTTGGAGCATCGATTTTGTTATTTTTGCCCAGACCTCCACGAATGTCATTTCAACCTAAAACTTTGCACGCAGT
TAGAATATTCATCATGTTCATCACAAAAAAAATCAGATTTTTTTTTAAACTTTTACTATTTTTTTGAATTTTACTGTTCA
TGCAGGAGCTATGAGCTCGGGATCAAAAGAGCACTTTCGCAAACTAACCTCATTCCACGCAAAAGTATAGCTATCCAAAT
TACCATCCAAATGTCCTAAAAAAATATTACTCTCTCTGTAAAGGAATATAAGAATATTTAGATCACTACTTTAGTAATCC
AAACGCTCTTATATTTCTTTACGGAGGGAGTACAATATAAAAAACAGATTCGGAGTTCACATAAATTCAGAGCTTGTAGG
AATAAATGGAACATAGAATAGTGTGTTAAAGAAAATCACGAGGCAGATGTAATTTGTGATAATTGGTTGCGATGAATGTT
CGAATACTATTTTTATCATGATCTAGCTTGAATAAATTTCAACAGGTTGACCTACATGTGTGGATAGGCACATCAGTTAG
CAATCTTACTTAATCTGATTACGAAGGAAAGAACGAGTAGGCAAGGTTGCAAGCCGTTCCTGCCTCCCCCGGGACAGATC
CACTCATCCCGCCGCCAGCCGCGCTCCGAGGCCAAGGCCAGCCTCCGGCCGCCGCCGCCAGTCTGTTTTCGCGCGATAGG
CAGTCGAAGCCGAACAGCGCAGGTGGAGGCGAGCGATCAGCAAATAGAAACATCGATTAACCAACAGCCGAACGTGCGTG
CGTCAACCTAGCGATTAACCGACAGCAGAACGTGGCTTGCTAGGCCTAGCTCTTACAAAGCCCATTACCAAACGAAGCCG
GCCCAACACAATTCTGCCCGGGAAATCACGGTCCGTACGTCAATTTTTTCAGCTATCGCAGGACATCGTACAGCGTACGC
ATAGGCATCGAGCCCGGGCAAGTGCCCAGGCTGGCCGGGCGCTGGCTCCGCCCCTGGGCCGGAGTACATGGCGCAGCGGC
TGTACCAGCTCAGCCCGCCCGAGGACCTGACGCTGGCGACGATGCTGGTGAGGCCGTCGCGGCAGTTCGTGGACGACGCC
GCGATGAGCGGGGAGGGGGTACTGACGGCGGAGAGGTACGGCGCGGTGAGCCGCGTGTACGTGCTCGCCGAGGAGGACGC
CTCGTGGTCGCCGGAGTTCCAGCTGCGGATGGCGTCGTGGAACCCCGGCACGGAGGTGAGGGGGCTCCAGGGGGCCGATC
ACATGCCCATGTTCTCCAAGCCCAGGGAGCTCTCGGACCTCCTCCTGGAGATAGCCAACAAGTACACTTGAAC-------
-CAGCAAACTTCATGTTCAGTTATGAATTCTGA-------ATAATTC-TTCGGAGAATTCGAGAGATGTCTGATTCTGAC
TGCAT--------ATCATCAAATATGAATACATTCTCTGTCCAAAAGAAAAGTGCATACATATGTGTAACAAGAAGATTA
TGGTACAGA-TCATTTTTGTTGCATTTCTCCTCTACTTGACAAAACCTTACGCCCAGACCTTGCTAGGGAAGTT-----C
TTCAGACATGGATGTCACCAAGAACATCATGATACAAAA--------------------AACATTTATTTATGTTACA-T
TTACTCCTCGGCTAAACGAGACCATGACCGACACGGGTACAAAAC-----------------------------------
------------TGTTTATCTACAAGATCAAACATCGATCACTAGGCTGAAGGAATCCGCCATGGCAAAGAACTCTTCCT
TAACCGACCTCCATGCCGACTCGGGTGCCTGGGCATTCAAGGTGTACAGTTTGCCGTCTCTCGCGCAGCACACCGCCACA
TTGTGCCGCCGAAATGATGGGCTTTCGACTCGGAATTCCAGCTTGTAGTATTTCACATTGTTCACGGTGTCCTCTCTCAA
CGCGGCACCGATCAGAGTGGCGCTGATGTCCGGGTTTCGCTTTGTCCTTGCGATCCTCCTCAGCACCACTTGCCCGACAT
CTTTAGGGCCGCCGAAAGACTCGATCCTGTTCCAAGCATTCCAATGCTACTTTAGAGAACACTATGACATACTAGCGGTG
CACTCTACTCATTTTGAGTGAAATAGTAACTCGTTAATGTGACCGGATTTCTTATGATCATGTTTCATACAAGAACTGAA
GTATACTATTTAAGCAGTAGGAAAATGCTTACGCTAGGAAAGAAGTGCTAATGCACATTTCATTAAGAAACTGAAATGAC
ATATGAGTATACTTACGAGAAATCTTGAGGGACGGTTGATACAATGACGCTGACATTGAGCTCCCCG
>chr3D_2
-TTTGAATCTTCTTTGCCATT---TCCTTCCAGATCATGGAGGAAACGGCGCCGGACGCCGCCACGGACAGCGTGCCCGC
GGTGACCGGCGGGGCGGAAACGTTTCTCCTGGGCCCCGAACGCCTGTCGCGGCGTCTGTACCAGCGAAGCCCGCCCGAGG
ACCTGGCGCTGGCGACGGCGCTGGTGAGGCCGGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGTCCTGACC
GCCGACAGGTACGGCGCGGTGAGGCGCGCGTGCGTGGTCACCGAGGAGGACGCGACGTGGGCGGCGGAGTCGCAGCGCCG
GATGGCGTCGCGGTGCCCCGGCGTGGAGGTGGTGGCCGTCGAGGGGGCCGACCACATGCCCATGTTCTCCACGCCCCACC
GACTCGCCGCGATCCTCATGGAGATCGCCGACAAGTACATCTGAGCTAGCCATCAACTCATCGCCAGTACAGGCTGCCGT
TCGCCGGAAACAGCGA------------------------------------AAAAAAGCAGAGCATCTCGCTGTCATAA
G---------------------TAA-------ACAATCCAAAGTGTACTTTTCATTCAGCACAACCACCACTCAGA-AAA
AGTGGAGAAATTGAGGTGATCATGTCGCGTGGACTACCACCACACTTGTCCACCTTGTGTCGCAATCCAGCCCAGGGGAT
TTGTACCAGCAAGAAAGAGCTCGGCGGACCGTGAACGGAGGGACAAACCGATGGAGAGCGCCGGCGCCGGCGAGGAGCGG
CCGCGGGGCCACCGGTTCGTGCTCGTGCACGGCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCACGGCCCTGCG
GTCGGCCGGCCACCGCGTCGACGCGCTCGACATGGCCGCGTGCGGCGCCAGGCCGGGGCGCGCCGAGGAGGTGGGCTCGT
TCCAGGAGTACAGCCGGCCGCTGCTGGACGCGCTGGGGGCGCTGCCGCCGGGGGAGAAGGCGGTGCTGGTGGGCCACAGC
TACGGCGGCCAGAGCCTGGCGCTGGCCATGCAGGCGCACCCGGACAGGGTCGCCGTCG---------CCGTCTTCGCCTC
CGCCGCCATGCCGGCCGCCGGGAAGCCCCTCAAGTTCGTCTCCGAACAGGTCAGC--GCGCGCGCCCACCCTCTCGATCC
ACACCCCACG-CCCCCACCATGAACGAACCTAACACAACA-----CTCGATATTACAGTTTGCGCAAGAAAGGGGCCCGG
GTTTCTTCATGGACAGCGTGATCGAGACCACCGGCGGCGACGACCTGGAGCGCGCTTGCAAGACGTTCCTGCTG------
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-------------------------------------------------------GGGCCGGAGTACATGGCGCAGCGAC
TGTATCAGCTCAGCCCAGCGGAGGACCTGACGCTGGCGACGATGCTGGTGAGGCCGTCGCGGCGGTTCGTGGACGACGCC
GTGATGAACGGGGAGGAGGTGCTCACGGCGGAGAGGTACGGCGCGGTGAGCCGCGTGTACGTCGTCGCCGAGGAGGACGC
CTCGTGGTCGCCCGAGTTCCAGCGGCGGATGGCGTCGTGGAACCCCGGCGCGGAGGTGCGGGGGCTCCAGGGGGCCGATC
ACATGCCCATGTTCTCCAAGCCCAGGGAGCTCTCAGATCTCCTCGTGGAGATAGCCGACAAGTACATGTGAAATTCTGAA
TCAGCAAACTTCATCTTCAGTTATGAATTCTGA-------ATAATTCCTTGAGAGGAATCGAGATGGATTGCTTGGGTCA
AAATTC--------------------------------------------------------------------------
----------------------------------------------------------------------------AAAC
TTCAGACATGGATGTCACAAAGAACATTATGGTACAGAAATATTTACCACTTCCGCTTCAACATTTATTTATGTTACGTT
TTACTCCTCGGCTAAACGAAACTATGACATTCGCAAGCAAAGTTACAAGCTAATGGATAGAAACTCCCAAGGGTCATGGA
TACAAAACTGTGTGTGTATCTACAAGATCAAGCATCGATCACTAGGCTGAAGGAATCCGCCATCGCAAAGAACTCTTCCT
TAACCGACCTCCACGCCGACTCGGGCGCCTGGGCATTCAAGGTGTACAGTTTGCCGTCTCTCGCGCAGCACACCGCCACA
TTGTGCCGTCGGAAGGAAGGGCTTTCGACCCGGAACTCTAGCTTGTAGTATTTCACATTGTTCACGGTGTCTTCTCTCAA
TGCGGCATCGATCAGAGTGGCGCTGATGTCCGGGTTTCGCTTTGTCCTTGCGATCCTCCTCAGCACCACTTCCCCGACAT
CTTTAGGACCGCCGAAAGACTCAATCCTGTTCCAAGCAGTTCAACAATGCT-----------------------------
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>SNPs
-----------------------------------------------S--------------------------------
-----S-----S------------------------------------------S-------------------------
------------------------------------------------------------------------S-------
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------S-----S---------------------------------------------------S---------------
S----------------------------------S---------------------------S----------------
--------SS-----S------------------------------------S--S------------------------
-S---SSSSSSSS-S--S-SS-S-SSSSSSSS------S--------------S----------------------S---
-------------------------S--------------S---------------------------------------
----------S---S--------S---S--------S---S-S------------------S------------SS----
---------------------------------------------------------------------S----------
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-----------------------------SS---------S---S-----------------------------------
---------S------------------------------------------------SSSSSSSSS-------------
------------------------------------------------------S------S----S----------S--
-------SS-S--------------------------------SS-----------------------------------
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--------------------S---------------------------------------S--S---------------S
------------------------------------------------------------------SSS-----------
-------------------------------------------------------------------S----SSSS----
---------------------------------SSSSSSS--------------------S-----------S--SSS-S
-S--SSSSSSSSS------S----S-----SS-------------SS-S----S----S--S----------S--S----
--S-S----S------S----SS-------S-SSS--------------SSSS--SS--SSSSSSS-SS--SSSSS----
----------S----------------SSSS-S-S--------------------------S------------------
-S------S-------SS--------------SS----S-------------S------S--SS----------------
------------------------------------S-S--S--------------------------------------
-------S--------------S-----------------------------------------------S---------
--------------S-----------------------------------------------------------------
---S-----S--S-----S--S-----S--S-----S--S-----------------S-----------------S----
--------------------------------------------------------S------SSS-SSS-SSSSSSSSS
S-SSS----------S-S-------S----SS-S-S-------SS--S------S----------S-S---S-----S--
--S-----SSSSSSSSS-SSSSS-------S--------S--------S---S-S---------S--S---SSS-----S
----S----------------S-----S---------------------------------------
>forward_637
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---------------------------------------------------------AGCACAACCACCACTCGTAC---
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>reverse_3877
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------------------------------------CCGTTTTGTCCTTGCGATCC------------------------
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