>input_sequence_74166
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------------------------------------------------------------------ATGGGAGTCGCCGC
CTCCGCCGCCGCTCCTCCCCCGGAGGCCGCCGCGCCCGCCGATCCACCGGCCAAAGAAGATATCGAGCATGGCTCCGCCG
CGTCCGCC---------GCAGATGCGCCCCCGGAGGCCACCGCGCCCGCCGATTCACCGGCAAAGGAAGAGGCCCAGTCC
GCCGCCGCCGCCGCCT---CTCCCGGCGGCGAGGCGGGCGCGGCGGGGGAGACGGTGGTCCTGGACGCCTCGGCGGAAGG
CGGCGAGGAGGAGGAGGAAGGGGAGTGCGGATTTTGCCTGTTCATGAAGGGCGGCGGGTGCAAGGAGGAGTTCCTGGGGT
GGGAGAAGTGCGTGGAGCAGGCGGAGGCGGAAGGCGGCGACGTCGTCGAGCGCTGCCACGACGCCACCGCCGCGCTGCGC
AGGTGCATGGACAAGTTCCCGGACTACTACGAGCCCATCCTCCGCGCCGAGCGCGCCATGGCCGAGGATCTCGAGGCCTT
CAAGGCCAGCGAAGCCTCCGAGCCCTCCCCTGCCTCGCCGCCGCCCCCGGCGGCGGAGGAGGAACAGGGCGACAATAAGA
AGCAGGCGGAGCCGGTGGTGGTGAAGGAGAAGGAGGATCTTGCGGCCTGA------------------------------
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>chr5A_1_TraesCS5A01G373700
TTAATTGTAATTGTGGCTGGAGTGGCGACATCAACACTTAGTTGTAGCATTACCACAAACAAAAAAAAAACACCCAGGGA
AGTATAGAACACAGTCGACATGAACCACCCAACCACATAAAAAATACAAGAGCAAAACCACCCAAGGAAGTATAGATAAA
GCGAGTTTTTTTATTTCTGGTGTTATGAAAAAAAGACACATTGCAGGTTTATATATTGGACCCTGTTAAGTGCCACATGT
GTGGCATGAACACATGGCAACTCCAAACATTTTTTATGACAAGTTTAGTGACATGAGG----------------------
ATGGCAACTTTCATTTCGAATGACAAGTTTCAGTTTTTTTGGATTTACTTTTTTCTTTTAGGATGGCAACTTTAGTTGTA
AAAAATAGGCAGGGCGAGATTGTTTCATGCCACACATGTGTCACCTATCATTTGAGTAT-TTTTTTGTTATTTCGGATGT
TCATTGTACTGCCATGATAAAC--AACGAATAGATCAGAAAAAAATCCCCTATAAAAAAGATAGGATTT-TTTTTTCTGA
AAATTAAAAATGGAATAGAAAAAAAAAAACCGTCCGTCTTGGCCACGGACGGGGATGTAGTCCTGTCGTCAACGCCGGCA
AGCACGATGCCGGAAGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCTCTACCCGTGCTCGCGAAGCCCATTAGTTTAGGCCCACCTCGAATAGGGTTTAAGCTTCCC
CGGTCCCGCAGCTTCCACGAATCCCCCGTCCGATTCAACAGGCAAAACCTCCCTCACGCTCACGCGATGGGAGTCGCCGC
CTCCGCCGCCGCTCCTCCCCCGGAGGCCGCCGCGCCCGCCGATCCACCGGCCAAAGAAGATATCGAGCATGGCTCCGCCG
CGTCCGCC---------GCAGATGCGCCCCCGGAGGCCACCGCGCCCGCCGATTCACCGGCAAAGGAAGAGGCCCAGTCC
GCCGCCGCCGCCGCCT---CTCCCGGCGGCGAGGCGGGCGCGGCGGGGGAGACGGTGGTCCTGGACGCCTCGGCGGAAGG
CGGCGAGGAGGAGGAGGAAGGGGAGTGCGGATTTTGCCTGTTCATGAAGGGCGGCGGGTGCAAGGAGGAGTTCCTGGGGT
GGGAGAAGTGCGTGGAGCAGGCGGAGGCGGAAGGCGGCGACGTCGTCGAGCGCTGCCACGACGCCACCGCCGCGCTGCGC
AGGTGCATGGACAAGTTCCCGGACTACTACGAGCCCATCCTCCGCGCCGAGCGCGCCATGGCCGAGGATCTCGAGGCCTT
CAAGGCCAGCGAAGCCTCCGAGCCCTCCCCTGCCTCGCCGCCGCCCCCGGCGGCGGAGGAGGAACAGGGCGACAATAAGA
AGCAGGCGGAGCCGGTGGTGGTGAAGGAGAAGGAGGATCTTGCGGCCTGATCCCGCCGCCTAGGCGTGGGATCTTGTGAT
TTTTTGGTGAGATTTGAGGCATCCTAGATGTGAATTATTTTGTTTTACCTGGTGCGTGATCTGCAAGATGGGAGAGGGTG
GCCTCTCCAAGAAAAATTCGATTCTTTTGGTGGGAATTATACACT-GTTCACGAGCTCTAGCTCGTGAACTAATATGGAG
AAGTGATCTTGTGCTGTAATAATAATCCAATGCATCGATACTGATTTGACACGATTAGCTCTCGTGCTGATCTTA-TTCT
TCAAATTTGTAACGCTGATCATGCGTAGCGAACAATTGAC-AGGAAGTTCGTCCAGTAATCAGTTTGTCAATCAGTAACT
GAGTGAGCACTAATCTCC---GTTGTTAGATGCTGGTTTTGTTCATGGTGCTGGAGAGATTTGCCACTCTTATTTGGCTG
GGTTTTTTTTTGACCCGTTATTTGGCTGGTTTTTTTTTTGACCCGTTATTTGGCTGGTTTTGGACATTTGTCAGCTAATT
TTGAGCAATGTAATGTAAAGATTATAGGGGTTGCCATTTAGTGTCTGAATCAGCGGTGCTGAGGCTGTCCATACCGTGTT
CTGTTCGGTATATGTTAGTTCCAGCCGGCCTCATTTTGCCTTGCAACAGCAAGAATTTCCTGACATAGTTATAAACATGG
GATTCTCAAAGAATGATTTGCTTGGTTATAATTCGCT------------------ATTTCATCTACACTGCTGGTGTTAC
CCTGTGCTATTTC-------------------------------------------------------------------
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---------------------------------------------ATCTTTGGCTAC-----------------------
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---------------------------------------------------------TTTTGCAAATTTACAGTTGAATT
TGAGAATTGCTGCCTGTTTAAAGTACATTTGAATTGAAAGTTTCTGCTGCATTTCTGTATTCTTGGGGACAGATTGTAAG
GTTCATTCAGTAGTGGAATAAAGATGTCTTGGCAGTTCAATTTAAACTGCAAAAACGTTTTATTATTTAGAAACAGGGGT
ACCAGTTCTGCTTACTTGTTGTGACCTGTTTTGTTCGTCGACATGTTGGACGCAGTCCCGTTACAG
>chr5D_168
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-------TTTTTATTTCTGATGTTATGGAAAAAAGACACGCTGCATGTGT---TATTGGACCCTGATAAGTGCCACATGT
GTGGCACGAACACATGGCAACTCCAAACG-TTTTTATGGCAAGTTTAGTGATGTGCGAATGGCAATTTTAGTTGTCAAGC
ATGACAACTTTCTTTTCGAATGACAAGTTTCAATATTTTTTGGATT--TTTTTTCTTTTCGGATAACAATTTTACTTGTA
AAAAACGCCAAGATGGGATTTCTTCAAGC---CACACGTGTCACTTATCATTTGGATATATTTTTTGTTATTTCTGATGT
TCCTTCTACTGTCATGATAAAACAAATGAATAGATCGGAATTT----CCCTATAAAAAAAAGATTGGAAGTTTTTTCTGA
AAATAAAAAATGGAATG----AAAAAAGGCCGTCCCTCTTCGCCACGGACGGAGATGTACTCCTGTCGTCAACGCCGGCA
AGCACGATGCCGAAAGAGGAGAACTAGTCCACCACGCACAAAAGTACATATTCTCAAAAAAAAAAACCACAAAAGTACAT
TGTAACGCCGGTACGCCCGGGCCGGGCTGTT-------------------------------------------------
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-----------------CCTCTACCCGTGCTCGCGAAGCCCATTAGTTTAGGCCCACCTCGAATAGGGTTTAAGCTTCCC
CGGTCGAGCAGCTTCCACGAAGCCCCCGTCCGATTCAACAGGCAAAACCCCCCTCACGCTCACGCGATGGGAGTCGCCGC
CTCCGCCGCCCCCCCTCCCCCGGAGGCCGCCGCGCCCGCCGATCCACCATCCAAAGAAGATGCCCAGCATGCCGCCGCCG
CCGCCGCC---------GCAGCAGCAGCAGCT---------GCGCCCGCCGATTCACCGGCAAAGGAAGAGGTCCAGTCC
GCCGCCGCCG------CCGCTCCCGGCGGCGGGGCGGACGCGGCGGGGGAGACGGTGGTCCTGGACGCCGCCGCGGAGGG
CGGCGAGGAGGAGGA---AGGGGAGTGCGGGTTTTGCGTGTACATGAAGGGCGGCGGGTGCAAGGAGGAGTTCGTGGGGT
GGGAGAAGTGCGTGGAGCAGGCGGAGGCGGAGGGCAGCGACGTCGTCGAGCGCTGCCACGACGCCACCGCCGCGCTGCGC
AGGTGCATGGACAAGTTCCCGGACTACTACGAGCCCATCCTCCGCGCCGAGCGCGCCATGGCCGAGGATCTCGAGGCCTT
CAAGGCCAGCGAAGCCTCCGAGCCCTCCCCCGCCTCGCCGCCGCCCCCGGCGGCCGAGGAGGAACAGGGCGACGATAAGA
AGCAGGCGGAGGCGGTGGT------GGCGAAGGAGGATCTCGCGGCCTGATCCCGCCGCCTAGGCGTGGGATCTTGCGAT
TTTTTGGTGAGATTTGAGGCATCCTAGATGTGAATTATTTTGTTTTACCTGGA-CGTGATCTGCAAGGTGGGAGAGGGCG
GCCTCTCCAAGAAAAGTTCGATTCTTTTGGTGGGAATTATACACTTGTTCACGAGTTCTAGCTCGTGAACTAATATGGAG
AAGTGATCTTGTGCTGTAATAATAATCCAATGCATCGATACTGATTTGACACGATTAGCTCTCGTGCTGATCTTAATTCT
TCAAATTTGTAACGCTGATCATGCGTAGCAAACAATTGACAAGAAAGTTCGTCCAGTAATCAGTTCGCCAATCAGTAACT
GAGTGAGCACTAATCTCC---GTCGTTAGATGCTGGTTTTGTTCATGGTGCTGGAGAGATTTGCCACTCTTATTTGGCTG
GTA--------------------------------------------------------TTAGACATTTGTCAGTGAATT
TTGAGCAATTTAATGTAACC-----------TGCCGTTTAGTGTCTGAATCAGCAGTGCTGAGGCTGTCCATACAGAGTT
CTGTTCGGTATATGTTGGTTCCAGCCGGCCTCATTTTGCCTTGCAACAGCAAGAATTTCCTGACACAGTTATAAACATGG
GATTCTCATAGAATGATTTGCTTGGTTATACATCGCCATTTGGTTATACATTGCCATTTCATCGACACTGCTGGTGTTAC
CCTGTGCA------------------------------------------------------------------------
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-----------------------------------------------------------------TCTTGTTGGCCTTGT
TT------------------------------------------------------------------------------
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--------------------------------------GCCCCAAATCTTTGGCTAC-----------------------
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---------------------------------------------------------TTTTGCAAATTTACAGTTGAATT
TGAGAATTGCAGCCTGTTTAAAGTACATTTGAATTGAAAGTTTCTGCTGCGTTTCTGTATTCTTGGGGGCAGCTTGTAAG
GTTCATTCAGTAGTGGAATAAAGATGTTTTGGCAGTTCAATTTAAACTTTAAAAACGTTTTA-TATTTAGAAACAGAGGT
AC----------------------------------------------------------------
>chr5B_872
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-----------------CCTCTAGCCGTGCTCGTGAAGCCCATCAGTTTAGGCCCACCTCGAATAGGGTTTAAGCTTCCC
CGGTCCCGCAGCTTCCACGAAGCCCCCGTCCGATCCAGCAGGCAAAACCCCCCTCACGCTCACGCGATGGGAGTCGCCGC
CTCCGCCGCCTCCCCTCCCCCGGAGGCCGCCGCGCCCGCCGATCCACCGGCCAAAGAAGATATCGAGCATGGCTCTGCCG
CCGCCGCCTCAGCAGCAGCAGCTGCGCCCCCGGAGGCCGCCGCGGCCGCAGATTCACCGGCAAAGGAAGAGGCCCAGTCC
GCCGCCGCCGCCGCCGCCGCTCCCGGCGGCGAGGCGGACGCGGCGGGGGAGACGGTGGTCCTGGACGCCGCCGCGGAGGG
AGGCGAGGAGGAGGAGGAAGGGGAGTGCGGGTTTTGCGTGTACATGAAGGGCGGCGGGTGCAAGGAGGAGTTCGTGGGGT
GGGAGAAGTGCGTGGAGCAGGCGGAGGCGGAAGGCGGCTACGTCGTCGAGCGCTGCCACGACGCCACCGCCGCGCTGCGC
AGGTGCATGGACAAGTTCCCGGACTACTACGAGCCCATCCTCCGCGCCGAGCGCGCCATGGCCGAGGATCTCGAGGCCTT
CAAGGCCAGCGAAGCCTCCGAGCCCTCCCCCGCCTCACCGCCGCCCCCGGCGGCCGAGGAGGAACAGGGCGACGATAAGA
AGCAGGCGGAGGCGGTGGTGGCGAAGGAGAAGGAGGATCTTGCGGCCTGATCCCGCGGCGCTGGTGTGGGATCTTGCGAT
TTTTTGGTGAGATTTGAGGCATCCTAGATGTGAATTATTTTGTTTTACCTGGGGCGTGATCTGCAAGGTGGGAGAGGGTG
GCCTCT-------------------------GGGAATTATACACTTGTTCACGAGTTCTAGCTCGTGAACTAATATGGAG
AAGTGATCTTGTGCTGTAATAATAATCCAATGCATCGATACTGATTTGACACGATTAGCTCTCGCGCTGATCTT-ATTCT
TCAAATTTGTAACGCCGGTCATGCGTGTCAAACAATTGACAAGAAAGTTCGTCCAGTAATCAGTTCGCCAATCAGTAACT
GAGTGAGCACTAATCTCCTCCGTTGTTAGATGCTGGTTTTGTTCATGGTGCTGGAGAGATTTGCCACTCTTATTTGACTT
GTC--------------------------------------------------------TTAGAGATTTGTCAGCGAATT
TTGAGCAATGTAATGTAAC-ATTATAGGGGTTGCCGTTTAGTGTCTGAATCAGCGGTGCTGAGGCTGTCCATACCGTGTT
CCGTTCGGTATATGTTGGTTCCAGCCGGCCTCATTTTGCCTTACAACAGCAAGAATTTACTGACACAGTTATAAATC---
----------------------------------------------------GCCATTTCATCGACACTGCTGGTGTTAG
GGCATCTCTAGTCGTTCGGCCCCCAGGGCGCCTAAATAGAGCGGCTTGGGGGCGTGCCGGCGCTAGTTCGGCCCCTGGGT
CGCCCCCAGTCACGCCCCCACGCGCCGGCCCCAGGATGCGGGAAATTTAAACTTGGTCGTTCCCGCTCTCAATAGACGCC
GCAAATCCGGCGATCGGACGTAGTCTGGCGTTACAAAAAACAGAGCGTCGCCGCGGCAAGTTCGCGTGCGCAATGATTCA
CTCGGTGGGGTCGGCTCCAGGCGTTGGCGGAGTCGGCGTGCACGGGCTCGTCGGTGTCGGAGCTGCTTCGGTGCTGGGCT
GCGTCGGCGCGACTTCGGCACTGCTGGGCGGCGATGTAGAGGCGTCGTTCGGGCTTGGCGTCCGTGTGGTCGCGGGCGTC
GTCGGTGTCGTCGGCGTTGCCGCCGGCAGCTCGTTCAGGATGAGGCCGCGTTGCATCAGGTACCACGCCTTGAGCTTCTC
GTCGTTGCTCTGGAGCATGTCCGCCCCGCCCATCAGAAAAGCCATGTCGGTGTTCCTCTTCTTCGCGGCGACGTTCGTCC
GGAGCAGGTCGAGCTTGATGGCGTTGTTCTTCATTAGCGACGACCACCGCGCCTCGGTCTTCTCTTCGCGTAGGACGGCC
CGGGCCTGGGCGTCGGCGAGGCAATGCTCGATGGACTCCTACACTCGCGCGGTTGCCGCGTCGGCGCTTTTCCCCTTCTT
TGCCAATTTGTGGCCGTCCGACCGCCCCTCTGACGCGCCCGGAGTCATCGCGTCCGGCTTGTATGTCTCCTTGGCCTTGT
TGAGGGCACGACGGACTTCCGCCCACTTCTCGCACTTGTCAATGCGCTTGTAGACGTGGAGGTGCTTGAAGTCGGCGTCT
TGGTTGTCGCCCCGATACATGGCGAACATACGCAGCAGCTGCGCGGAGGGACGAACAGTTGGCGGGCGCCGGGCGTAGGG
GACGAAGATATGCGGGCGAACGGCGTGCGTACCTGATCCTCAACGCTGGCGCCGCTCTTCGGGCGAGCCGCGACCTCCTC
GACGATTCCATGCCATTTATTGCACGCCAACTAGATACGCCCCCAATGGTTCGCTATCGTCTTGGAGCCGCGCTGCATGT
AGACGCCTTTGAAGTAGGGGTCGACGAGCTTCCGCTCGTCGAACTCGGCCTTGATGCGGTCCCAGTACGTCTCCAAGCTC
TGGTTCGCGCCGATGGTCGGGTCGAGGCAGACGACTTTCCATGCTTTGGCGAGGCATTTCTCCTCCTTGGACGTCCACTT
GATGCGCGGTTCACCTGACCTAGCCGCCCGCTTCTTCTTCTTCTGGCGCCCCTTCGTCGGAACAGGAGCCGGCTCCTCCT
CCTCCTCCTCCTCCTTCTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGGGTTCCTGCGCGTCGTCGCCGTAGACG
TAGCCGAGCTCGGCCTCCATGTCGCCGCTGAGGTCCACTACCTCGTCCTGGGTGGCGAACCCGGGAGACGCGGCAGCCGC
GGTCGATCCTGTCGCGATGATGTCGTCCATGTCGGCTCCCGTGTCGTCGGCGTCACCGAGGTGCGAGAAGGGTAGCGGTC
CACGGTAGAGATGGGGCGTCGGTGTGGACGCGTAGGCGGCGGGCGGCGAGTAGTTGTATGGAGGGTACTGCACGCCGACG
AAGGCGGGCGACGGCGTGCGCGTAGCGGGGTGACCATGAGGGAAGGTCACGTTTGGGCTGAACCCACCGTGCGCGTCGCC
GTCGGCGTAGCCGGGCGACGATGAACCCCATGGAGATCCGGCGCCTTGCTGTCCCCAGGGCGCGTACTGGGCGTGGCTGA
CGACGGGTGGATTCATCCCCGCTTGGTCGACCGATGAGGAAGACGCCGCCGTGCGCGCCGCGTTGTCGCGGGCCTTCTTG
GCTATGGCCCTGTTCCGCCTGTCGGCGGTGACTGCTTCGCGCCGCTGAACTTCCACCCTCCACTCGGCGTTCGACAGGCC
CGGTGGCTTCGATGGCGGCGCCCTCGGCTTCCTCTGCTTCGGCTGGGCCACGACGCCAGTCGCGGTTGCCGCCGCGCGCG
GCATGGCGTACTTCTTCGGCGGCATGGCGTACTTCTTCGCGGCGAGCGGGAGAGGGTTTGGCGGGAGAAAGGGAGAGAAT
GGCGGGAGGAAGGCGAGCGAGCGGGAGAGATGCGAGGGAAAAGCGTCAAGAAACGGCGGGAAAAGGCCCTCAGGTCGCCT
CCAGGGCGGGCCCATGCGTCTTTTTCGCTTGTGCCGGCTCCCCAAGCGCCTCCAGGGCGCCGGGTTCGGCCTGGGTCCGC
CGGCACCAGTTTTGGCCCGAGCCGGCGAAAAACGGGCTTCTGGGGCGCGACTGGGGCCTTTTTTTGGCGCCGGCGCGGCA
AAATCGTCTGGGGAGGGCCTGTTGGGGACGCGGCTGGAGATGCCCTTACCCTGTGCATTTTGTAAATTTACAGTTGAATT
TGAGAATTGCAGCCTGTTTAAAGTACATTTGAATTGAAAGTTTCAGCTGC------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------S-------S-----------SS----S--S-SSS------------S--------------
------S---------------------SS--------S------------SS--S-S----------------------
---S--------S-------------------S-S-----S-SS--SS-----------S----SS---S----S-----
-----SSSSS--SSS-SSS--S--SS-SSSSS----S-------S---------SS------------------S-----
--S--S-----S---------S----S---------S---SSSSSSS------------S-S-SSSSSS-----------
----S-----------SSSSS------SS------S----S-----------S------S--------------------
------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
---------------------S---------------------------S------------------------------
----------S-S-------------------------------------------------------------------
-SS------------------S----------------S-----------------------------------------
---------------S---------------------S-------------------------------S-S-----S--
------------------------------S------S---S-------------------------------S------
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------------------------------S-----------------------S------------------S------
-----------S---------S------------------------------------------------------S---
----------------------------------------------------S--------------S------------
---------------S---------------------------------------S------------------------
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-----------------------------S-------------S---------------------S-S------------
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-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S----
------------------SS---------------S--------------------------------------------
----------------S------------------------------------------------S--------------
--------S---------------------SS----S--------------------------S----------------
-------SSSS---------------------------------------------------------------------
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----------S---------------------------------------S-----------------S---S-------
---------------------------S--------------------SS------------S-------------S---
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_111
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-----------CAGTCGACATGAACCACCCA-------------------------------------------------
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>reverse_2091
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----------TGACCCGTTATTTGGCTGGT--------------------------------------------------
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