>input_sequence_74165
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-----------------------------------------------------------------ATGGATCCCACCAAA
TCCAGCACCCCGCCGCCGCC---CCCCGTCCTGGGCGCGCCCGTCGGCTACCCGCCGGGGGCGTACCCTCCTCCGCCGGG
CGCCCCCGCGGCCGCCTACCCGCCGCAG------CTCTACGCGCCGCCGGG---------------CGCCGCCGCCGCCC
AGCAGGCCGCGGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTCCCGCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCGCCGCCGA
GGCCCCCGTCGTCTTCGCCCGCGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTCCAGAAGTCGGACATTGCGGCCGCCATCGCCCGCACCGAGGTCTTCGACTTCCTCGTGGACATC
GTGCCCCGGGACGACGCCAAGGACGCCGAGGCGGCCGCCGCCGCGGCCATGGCCACGGCGGCGGCCGGGATCCCGCGCCC
GGCCGCCGGCGTGCCTGCCACCGACCCGAGTATGGCATACTACTATGTCCCCCAGCAGTAA-------------------
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>chr5A_1_TraesCS5A01G256500
CATCAACTAGAGTGTGCTTAACGAGGCTATGTGCCTCAATATTAGATTCGCGTTCCTTGAAAATGAAAGTACAAGATGTG
AATTGAGCTCAAGTTGATTTGATCTCCTTCGTGATGATGCCATACAAGCCTTCTGCATCGATTTTGATATTTGTAACAAC
CTC--------TCTGATGCTATTAACATGAGAAATTTGTTAATGGTA-TTTTTTTTGCAAAAAGGTTAACTAGGCCTTGG
GCCAACTGGGGTCACGGTAGAATCTATTGGAGCGAACGCTCGAGATACCCTCGAAG------------------------
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-----AAAAAAAAATCTCCTCACTATGACCCAAAGATTGTCCTCGATATTGACGGAATCTAAGGGGAGGCTAGGATGCAT
GAATTTGTTGCGAAAAACCCTTGCATTTCTAAGAAAT-CTACTAATCAAAATGCACAAACTCTACAGAAAAACTACAAAG
AAATGAAATGTATAAAATTCCCAAGAAATATCTTTGAGATAAACATGCCTTAAAACATCTTCGAAAGTATTTTTTTTTTC
ATTTGATGGAATTAAACAAACGGAGGTCATGTAAGGATCCAAACCAACGCGACATTATAGTACCGTGTTTCAATATTTTG
GTGTCTTTACAATTCTACTAATCAAATATGCCCTCAATCATGCGCGTTGTAATGTAAACTCATTGGAC------------
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----CGCTTTTGCACCATGTCAAGCAATTTGATTCATGTTTGGAGAAAAAAGCGTT----AACTAATTTATCTCTGAAAC
CGAAACAATGTTATTCCTTTGCACTTTTAAAGTGTGAAGATTCAGTAAGTAAACAATGTTATTCCTTTGCACTTTTAAAG
TGTGAAAATTCAGTAAGTATCTAACA-------------------------------------AATCCACCATTTCTCCA
TAGAAGAGATAACAGT-ACCAGCACCCACAAATCCAAACACCAAGACCAGCTCCAGCTGAAAAGCATCATCCCCTTCCTT
C--------CCCCAATCCCCAGTCCCCTTCCGCTTCCCACCCACAACCCTAGCTCCCCCGAACCCATGGATCCCACCAAA
TCCAGCACCCCGCCGCCGCC---CCCCGTCCTGGGCGCGCCCGTCGGCTACCCGCCGGGGGCGTACCCTCCTCCGCCGGG
CGCCCCCGCGGCCGCCTACCCGCCGCAG------CTCTACGCGCCGCCGGG---------------CGCCGCCGCCGCCC
AGCAGGCCGCGGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTCCCGCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCGCCGCCGA
GGCCCCCGTCGTCTTCGCCCGCGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTCCAGAAGTCGGACATTGCGGCCGCCATCGCCCGCACCGAGGTCTTCGACTTCCTCGTGGACATC
GTGCCCCGGGACGACGCCAAGGACGCCGAGGCGGCCGCCGCCGCGGCCATGGCCACGGCGGCGGCCGGGATCCCGCGCCC
GGCCGCCGGCGTGCCTGCCACCGACCCGAGTATGGCATACTACTATGTCCCCCAGCAGTAATGTATCATCGATCTAATCT
TGCGCATTTCTAATCGGAGAATGTGTTGTTGTTCTGTGACTG-TCCTTGGTGCTGTTGTTGCTGCGGCGTAATAAGATTT
ATGGGCCTCCCCTGAGCTTATGAATTGAGCTGTTCGGTTCTAGTATGTATTACAGTAGGATTGTTGTAATTGGGGAGGCC
GTATGATTGCTTCAGTAGTGCATGACTAACTGGCCACCCAGTGTAATCTGATGACTATTATCCGGTGCCTCCCATGGTTA
CTATGTATTTATGTTCTTTATTTTCGCCTTGCATTAGTTTTGTTGTTGTTCTATGATAGTATTGTGCTGTGATTACTCCA
TATTAGAGGCCTGTTCGGCATCCCTCCAACTCCACGCTCTCGCTCCGGGAGTTGGTGGAGTTGAAGGTAAAAAGTAGGGA
GCGGGGGAACAGGTGCTCTGCAGATCCTAGAATTTCAAGCAAGGCTTGTTGTAATTAGGCCTTTGAAGCAATATGTGGAA
ACTTTG-ATAAACTGATTGTAATATTTGACCGACATAGGATCTTGCTTCATATTGGTGTGATAGTAAGATTATTGTGGAT
AGCTAGTGTTCTCTCTATGTTTATTTTCAAGCAAGATTTTGCTATGAAACATTGAAACTCATAATGCTAGAAGTATAGCA
TCCTGCATGCTTTGTATAATA-TCGATGACAGGTCTCCAGCTATTTTTC------------TTTTTCAGAATTCAGTTGA
TCAGCTTTGCAACCAACATATTTATCAAAAGGTCATATTTTATACTCCGTCCATCCCAAAATAAGTGTCTCAACTTTATA
CTAACTTTAGTACAAAGTTGTACTAAAGTCGAGGCACTTATTTTGAGACGGAGGGAGTAACAAGTAACTTTGCAATATGT
CTGCAATTCTAACTGTAAATCTTCAGGGGCACTATTAGTGCAAATAACTGTTGGCTGCAATGGAGAAATTTATAATTGGA
AATACATTCTGCATTTTCTGAGGTCAAAATCAACTG
>chr5D_1
CATCAACTAGAGTGTGCTTAGCGAGGCTATGTGTCTCAATATTAGATTCGCGTCCCTCGAAAATGAAAGTACAAGATGCG
AACTGAGCTAAAGTTGATTTGATCTTTCACGATGC--TGCCATACAAGCCTCCTGCATCGATTTTGATATTTGTAACAAC
CTCTTTGGCAGTCTGATGCTATTAACATGGGAAATTTGTTAATGGCATTTTTTTTTGCAAAAAAGTTAACTGGGCCCTGG
GCCAACTGGGGTCACGGTAGAATCTATTGGAGCGAACGCTCGAGAAAGGGAGATCCATTCCCCTGATGAAATGTCCCTTT
ACAAACGTTTCGTTCACTACCCACCTTCCCATCTAACGGTCAAACCCAGTTAGGGTCCTAAATATTTCTCCCTTGCCCTC
GAAGAAAAAAAAAATCTCCCCACTATGACCCAAAGATTATCCTCGATATTGACGGAGTCGAGGGGAAGGCTAGGAGGCAT
GAATTTGTTGCGAAAAGCCCTTGCATTTCTAAGAAAAGCTAATAATCAAAATGCACAAACTCTACACAAAAACTACAAAG
AAATGAAATGCATAAAATTCCCAAGAAATGTCTTTGAGATAAACATGCCTTAAAACATCTTTGAAAGTAATTTTTTT--C
ATTTGATGGAATTAAACAAACGGAGGTCATGTAAGGATCCAGACCAACGCGACATTATAGTACCGTGTTTCAATATTTCG
GTGTCTTTACAATTCTACTAATCAAATATGCCCTCAAACATGCACGTTGGGTTGTAAATTCATCGGAC------------
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----CAATTTTGCACCATGTCAAGCAATTTGATCCTTGTTTAGGGAAAAAACGTTAAAAAAATTACTCTATCTCTGAAAC
TGAAACAATGTTATTCCTTTGCACTTTTAAAGTGTGA-------------------------------------------
--TGAAAATTCAGTAAGTATCTAACACCACACACACACGCGCCCAAAATTAATAGCACTAACAAAACCACCATTTCTCCA
GAGAAGGGATAATAGCCACCAGCACCCACAAATCCCAACACTAAAACCAGCTCCAGCTGAAACGCATCGTCCCCTTCCTC
CCCCCCAATCCCCAATCCCCAGTCCCCTTCCGCTTCCCACCCACAACCCTAGCTCCCCCGAATCCATGGATCCCACCAAA
TCCAGCACCCCGCCGCCGCC---CCCCGTCCTGGGCGCGCCCGTCGGCTACCCGCCGGGGGCGTACCCTCCTCCGCCGGG
CGCCCCCGCGGCCGCCTACCCGCCGCAG------CTCTACGCGCCGCCGGG---------------CGCCGCCGCCGCCC
AGCAGGCCGCGGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTCCCGCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCGCCGCCGA
GGCCCCCGTCGTCTTCGCCCGCGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTCCAGAAGTCCGACATTGCGGCCGCCATCGCCCGCACCGAGGTCTTCGACTTCCTCGTGGACATC
GTGCCCCGGGACGACGCCAAGGACGCCGAGGCGGCCGCCGCCGCGGCCATGGCCACGGCGGCGGCCGGGATCCCGCGCCC
TGCCGCCGGCGTGCCCACCACCGACCCGAGTATGGCGTACTACTATGTCCCCCAGCAGTAATGTATCATCGCTCTAAACT
TGCGCATTTCTAGGCGGAGAATGTGTTGTTGTTCTGTGACTG-CCCTTGATGCTGTTGTTGCTGCGGCGTAATAAGATTT
ATGGGCCTCCCCTGAGCTTATGAATTGAGCTGTTTGGTTCTATTATGTATTATGGTAGGATTGTTGTAATGGGGGAGGCC
GTATGATTGCTCCAGTAGTGCATGACTAACTGGCCACCCAGTGTAATCTGATAACTATTATCCGGTGCCTCCCATGATTA
CTATGATAG---------TGTTTTCGCCGTGCATTAGCATT-TTGTTGTTCTATGATAGTGTTGTGCTGTGATTAATCCA
TATTAGGTTGCAAGGTTCCCCCATGCATGC--------------------------------------------------
--------------------------------TTTCAAGCAAGGCTTGTTGTAATTAGGCCTTTGAAGCAATAAGCGGAA
GCTTTGAATAAACTGATTGTAATATTTGACTGACATAGAATCTTGCTTCATATTGGTGTGGTAGTAAGATGG-TGTGGAT
AGCTAGTGTTCTCTC-ATGTTTATTTTCAAGCAAGATTTA-CTATGAAACATTGAACTCAAAATGCATGGGAGTATGGCT
TCCTGCATGCTTTGTATAATATTCGATGACAGGTCTTCAGCTATTTTTCATTTCCTTTTTCTTTTTCATAATCCAGTTGA
TCAGCTTTGCAAACAACATATTTATCGAAAGGTCATATTTTATACTCCATCCGTCCCAAAATAAGTGTCTCAACTTTATA
CTAACTTTAGTACAAAGTTGTACTAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTAACAAGTAGCTTTGCGATATGT
TTGCAATTCTAACTGTAAATCTTCAGGGGCACTATTAGTGCAAATAACTGTTTGCTGCAATGGAGAAATTTATAATTGGA
AATACATTCTGTATTATCTGAGTTCAAAATCAACTG
>chr5B_347
GGAGTCGAGGGC--------------------------------------------------------------------
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----------------------------------------------------------------------------GCAT
GAATTTGTTGCGAAATAACCTTGCATTTTTAAGAAGAACTACTAATCAAAATGCACAAACTCTACACAAAGACTACTAAG
AAATGGAACGTCCAAAGTTTCCAAGAAATATCTCTAAGATAAAGATGCCTTAAAACATATTTGAAAGTAAA--TTTT--C
ATTTGATGGAATTAAACAAATGGATATCACGTA-GGATCCAAACCAACAAGACATTATAGTACCATGTTTCAATATTTTA
GTGTATTTACAATTCTACTAATCAAATATGCCCTCAAACATGGAATTTGTAATGTAAATTCATTGTACTCCCTCGGTTTC
TTTTTACTTCGCATATAAAATTATTTAAAGTCAAACTACGCAAAGTTCGATCAAGTTTATATAAAAAATATCAATATCTA
CAATACTAAAGCTATATGGTATGAAAAGTAATTTCCTGATGCATCTAATAATACCGATTCCATATTGTGAATGTTGATAA
TTTTTTGTATAAAGTTACTCAAATTTTACAAAGTTTGACTTTGACCAGATTTTATATGCAGATTAGAAAGAAACAGAGGG
GTATCATTTTTGCACCGTGCCAAGCAAATCGGAAACAGAGAAGTGTTCAAT---------------TTTGTTTCTGAATC
TGAAATAATGTTATTCCTTTCCACTTTTAAAGC-----------------------------------------------
-GTGAAAATTCAGTAAGTATCGCG-------------CGCGCTCAAAATTAATAGCACTAACAAAACCAACATTTTTCCA
GAGAAGGGATAATAGT--CCAGCACCAACAAGTCCAAACACCAAAGCCAGCTCCAGCTGAAAAGCATCATCCCCTTCCTC
CTCCCCAATCCCCAATCCCCTTCCGC--------TCCCACCCACAACCCTAGCTCCCCCGAATCCATGGATCCAACCAAA
TCCAGCACCCCACCGCCGGC---CCCCGTCCTGGGCGCGCCCGTCGGCTACCCGCCGGGTGCGTACCCTCCTCCGCCGGG
CGCCCCCGCGGCCGCCTACCCGCCGCAG------CTCTACGCGCCGCCGGG---------------CGCCGCCGCCGCCC
AGCAGGCGGCGGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTCCCGCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCGCCGCCGA
GGCCCCCGTCGTCTTCGCCCGCGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTCCAGAAGTCCGACATTGCGGCCGCCATCGCGCGCACCGAGGTCTTCGACTTCCTCGTGGACATC
GTGCCCCGGGACGACGCCAAGGACGCCGAGGCGGCCGCCGCCGCGGCCATGGCCACGGCGGCGGCCGGGATCCCGCGCCC
TGCCGCCGGCGTGCCCGCCACCGACCCGAGTATGGCATACTACTATGTCCCTCAGCAGTAATGTATCATTGCTCTAAACT
TGCGCATTTCTAAGCGGAGAATGTGTTGTTGTTCTGTGACTGTCCCTTGATGCTGTTGTTGCTGCGGCGTAATAAGATTT
ATGGGCCTCCCCTGAGCTTATGAATTGAGCTGTTCGGATCTAGTATGTATTATGGTAGGATTGTTGTAATAGGGGAGGCC
GTACGATTGCTTCAGTAGTGCATGACTAACTGGCCACCCAGTGTAATCTGATGACTATTATCCGGTGCCTCCCATGGTTA
CTATGTATTTATGTTCTTTGTTTTCGCCGTGCATTAGTTTT-TTGTTGTTCTATGATAGTATTGTGCTGTGATTACTCCA
TATTATGTTGCAAGGTTCTCCCATGCATGC--------------------------------------------------
--------------------------------TTTCAAGCAAGGCTTGTTGTAATTAGGCCTTTGAAGCAATACGGGGAA
ACTTTGAATAAACTGATTGTAATATTTGACCGACATAGGATCTTGCTTCATATTGGTGTGATAGTAAGATTATTGTGGAT
AGCTAGTGTTCTCTC-ATGTTTATTTTCAAGCAAGATTTTGCTATGAAACATTGAAACTCATAATGCTAGAAGTATAGCA
TCCTGCATGCTTTGTATAATA-TCGATGACAGGTCTCCAGCTATTTTTCATTTC-TTTTTCTTTTTCAGAATTCAGTTGA
TCAGCTTTGCAACCAACATGTTTATCAGAAGGTCATATTTTATACTCCGTCCGTCCCAAAATAAGTGTGTCAACTTTATA
CTAACTTTAGTATAAAGTTGTACTAAAGTCGAGACACTTATTTTGAGACGGAGGGACTAACAAGTAACTTTGCAATATGT
CTGCAATTCTAACTGTAAATCTTCAGGGGCACTATTAGTGCAAATAACTGTTGGCTGCAATGGAGAGATCTATAATTGGA
AACACATTCTGTATTTTCTGAGTTCAAAATCAACTG
>chr7D_1011
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---------------------------------------------------------------------------CCAAA
TCCACCACCCCTCCGCCGCCGGGCCCCGTGCTGGGCGCGCCCGTCGGCTACCCGCCGGCCGCCGTCTAC------CCGGC
CGCCCCGCCCCCCGGCTACCCGCACGCGCCGGCCCTCTACGCGCCCCAGCCGCCCCCCGCCGCCGTCGCCGCCGCGTCGC
AGCAGACCGCCGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTGCCCCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCGCCGCCGA
GGCGCCCGTCGTCTTCGCCCGGGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTGCAGAAGTCCGACATCGCCGCCGCCATCGCCCGCACCGAGGTCTTCGACTTCCTGGTGGACATC
GTGCCGCGGGACGAGGCCAAGGACGCCGAGGCGGCCGTCGCCGC------------------------------------
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>chr7A_1011
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---------------------------------------------------------------------------CCAAA
TCCACCACCCCTCCGCCGCCGGGCCCCGTGCTGGGCGCGCCCGTCGGCTACCCGCCGGCCGCCGTCTAC------CCGGC
CGCCCCGCCCCCCGGCTACCCGCACGCGCCGGCCCTCTACGCGCCCCAGCCGCCCCCCGCCGCCGTCGCCGCCGCGTCGC
AGCAGACCGCCGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTGCCCCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCGCCGCCGA
GGCGCCCGTCGTCTTCGCCCGGGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTGCAGAAGTCCGACATCGCCGCCGCCATCGCCCGCACCGAGGTCTTCGACTTCCTGGTGGACATC
GTGCCGCGGGACGAGGCCAAGGACGCCGAGGCGGCCGTCGCCGC------------------------------------
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>chr7B_1011
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---------------------------------------------------------------------------CCAAA
TCCACCACCCCTCCGCCGCCGGGCCCCGTGCTGGGCGCGCCCGTCGGCTACCCGCCGGCCGCCGTCTAC------CCGGC
CGCCGCGCCCCCCGGCTACCCGCACGCGCCGGCCCTCTACGCCCCGCAGCCGCCCCCCGCCGCCGTCGCCGCCGCGTCGC
AGCAGACCGCCGCGCAGCAGCAGCAGCAGCTGCAGGTGTTCTGGGCGGAGCAGTACCGCGAGATCGAGGCCACCACCGAC
TTCAAGAACCACAACCTGCCCCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCGCCGCCGA
GGCGCCCGTCGTCTTCGCCCGGGCCTGCGAGATGTTCATCCTCGAGCTCACCCACCGCGGCTGGGCGCACGCCGAGGAGA
ACAAGCGCCGCACGCTGCAGAAGTCCGACATCGCCGCGGCCATCGCGCGCACCGAGGTCTTCGACTTCCTGGTGGACATC
GTGCCGCGGGACGAGGCCAAGGACGCCGAGGCGGCCGTCGCCGC------------------------------------
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>SNPs
--------------------S------------S-------------------S---S--------------------S-
--S------S---------------SSSS--SSSSSS--------------S----------------------------
-----------------------------S---------------S-----------------S-------S----S---
---------------------------------------------S-SSSSSSSSS------------------------
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-------------------S------------------S-----------------S--S-S---S---------S----
------------------------------------S-----------------------------S-------------
-------------------------------------------------------------S-------S-------SS-
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-------------------------------------S-----S--------------S---------------------
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-----SS--------------------------S-S-----S-S-------SSS-S------S--S--------------
S------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----------------------------------------------------------------S--------------
S-----S-----S-------------------------------S----------------------------------S
--------------------------------------------------------------S-----------------
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-------------------------S------------------------------------------------------
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S--------------S-------------------------------------------------------S-----S--
-------------S-----------------------------S-----S------------------------------
----------------------------------------------------SS----------------S---------
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-------------------S--------S------------S--------------------------------------
------SSSS-SSSSSSS-SS-SSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S-S----
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---------------S----------------------------------------------------------------
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----------------------------------------------------S---------------------------
---------------------------------S----------------------------------------------
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-----------S----------S-------------
>forward_34
-------------GTGCTTAACGAGGCTATGTGC----------------------------------------------
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>reverse_2446
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---------------------------------------------CGGGAGTTGGTGGAGTTGAA---------------
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