>input_sequence_74158
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-------------------------------------------------------ATGGCAACGCTGGCAGCCT------
------------CCATCA---------------TCTTCATGCTTCTTTCCATGATCGTCTCTGCTCAAGCCGGCAGCTCT
GGTAGTGGCAAGCCTAAGACAACCGACCTCATGGTGGAAGCATGCAAGAACGCCTCGATT---GACTACTACATCGCGAC
GGTCCCGCAAGAATTTTGTTTGTTGACTCTCCAGTCAGACAATCGGAGCACCAACGCTGAGGATCTCCATGATCTGGTGT
TCATTGCCATCGACATCACCAAGGCTCGTGTCATTGCTGCGAGCGGCATGGTGAAGAAAATGTTGCAAAATGCCAAAAAG
GGTACGGTGACGATGCGCGTCCTTACTTTCTGCGAGGTGGACTATGAACAAACGGCGAGCATCCTCAACATATGTGATGC
CATGATCAAGGACTACCAAGGATATAAGGGCGAGATGCGGTCCCATGAGCTGGCTGGTTGTGTGGCTGAGGCGTACAGCC
CCGCCGCCTACTGCCAAACCGAGCTTAACGATGCGCCAAAGGAAGTGGCGCTGGTCAAGGAAAATGCTGAGCTGCAAATG
CTAGTACACATGAGCGCTAACTTCCTAGAGCCACTCACATTGCCAGAAGAGATGTTGTTTTGA-----------------
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>chr4A_1_TraesCS4A01G450500
TAGCAACGGCGGGTACTCAGCCAGTAGGGTTAAAGTTACTATGGCGGGCAGCACTTAGCACCCGCCAGTTCTAACTTGTG
AATACATAAATATATGATCTTGTGGCTGGCGTAGATAATTGCCCGCCACTGCAA-------------CGGCGGGCGTAGG
TAATGACCTGCCACTAATCACTTTTAGGACGTGGGCACACCCATGGGAGCATACTTGTGGCGGGTGGTAGTTTCCGCTCG
CCACTGCTTTGGCATATCTAGTGGCGAGTGTTGTCTCGTACCCGGCACTGCTACTTTTTGAAATTAGCTGTGACGGGTGT
CACACCTCACCCGTCACTCATTTGGGTTCACCTATAAGCCTTTTTTCAGGAGTGCACTAAAGGAAAAATTGTTCCCTACT
ACAAACCTTTACACTTGAGTCTTCAAAACCTTGCTCTCGAATAGAAG-AGTAGC-AACACGGGCCAACTTGATCTACTCT
CGTAA------TGATGAAAAAATAGCAAATTTGTTAAAGG--CATGTCTAGGGCACATCAATGAAAATTAGGGGTAGTAG
TATGAGGAGATCCAAA---------ATTATATCTATGAGCGTTGAGT---AGATACTCCTTTGGATATCAATAATCAAGG
TGTGTTGTGTTAATGAATCTGTAGAAGTTATATGAGTGTC-------AATACTACAAGATCCAAACTGGGCATCGATGTG
CTTGTGAATATAAAGAGCATTAATACCAAGAGATCCAAAACGAGC-----------------------------------
------------------ATCAATGTATTTACGAATATAGAGGGCACTAATACCAAGATATTTGAAATGAGCATTAACAT
ATGTGGCCACCGATTTGACATAAACCATACTTGTATCAAGGACCAAGGTGCATACTACATTTATGGAACCCCAGTGCACA
CATTATAAATAAATCTCAACCTCACCTCCATCCATTCATCCATCCATCTCTGCCCGACACATTTTCCTATATCCAATTAT
CTCCACCACTCTTGACTTTAGTATATTTGAAGGCATTCTAGCTACCCTTGGGACAATGGCAACGCTGGCAGCCT------
------------CCATCA---------------TCTTCATGCTTCTTTCCATGATCGTCTCTGCTCAAGCCGGCAGCTCT
GGTAGTGGCAAGCCTAAGACAACCGACCTCATGGTGGAAGCATGCAAGAACGCCTCGATT---GACTACTACATCGCGAC
GGTCCCGCAAGAATTTTGTTTGTTGACTCTCCAGTCAGACAATCGGAGCACCAACGCTGAGGATCTCCATGATCTGGTGT
TCATTGCCATCGACATCACCAAGGCTCGTGTCATTGCTGCGAGCGGCATGGTGAAGAAAATGTTGCAAAATGCCAAAAAG
GGTACGGTGACGATGCGCGTCCTTACTTTCTGCGAGGTGGACTATGAACAAACGGCGAGCATCCTCAACATATGTGATGC
CATGATCAAGGACTACCAAGGATATAAGGGCGAGATGCGGTCCCATGAGCTGGCTGGTTGTGTGGCTGAGGCGTACAGCC
CCGCCGCCTACTGCCAAACCGAGCTTAACGATGCGCCAAAGGAAGTGGCGCTGGTCAAGGAAAATGCTGAGCTGCAAATG
CTAGTACACATGAGCGCTAACTTCCTAGAGCCACTCACATTGCCAGAAGAGATGTTGTTTTGACATTAAATTTGCTCTTA
TTTGAAATAATGAGAATAATAATAATGTGATATTATTATGTTTGAGATGCTGTGTACATCCGGTGCATATTATAAAATCT
GATCCTTTTCACAGAATAAGTAAATAACAATAATAATGTTTATGGCACTCATTTTACTACTCCCGTCATACATAAATATA
AGTCGTCTTGGTAGGATAGCAGTATACATGCATACACACCGCCACGTACATTCGGCTGCCACCGAGGCCCCCTGCAGGCT
GTAGACAAGCAGCACACACGTACGGATCAGCCCATCAACAACCAACACGGACGCATCCAACCCCTCGTCTCTCATAGTCT
CATCTGTCTA--------------------------------------TCAATAAATGGTATGCAAATTTTCCATATTCG
CGAAAAATATAGGAATCCCT-----------------TCACATCTTCCCTAGCTTGGTAGTATGCAGATGTATACGTTGG
ATGTACGTGATGCGCACGCCAACTAGAAATACATAATCAGAAAAAACCATATCAGCGTCTCTTGTCTCTTACAACTGTTC
CATAATTCTGCGACGACGGCAACCTACAGCGTCTCTCGTCTTAAAAAAAAAAAAACCTCGGCCGACGGCGACCTGGATGG
TTGATAATTCTGCAGCCCCATGTGACTGAAAAAAATAAAACGTTTCAGCCTATTATATCCAAGCCATACAATGCGAATCC
CATGACTGTCATCCTCCTACTATTCGTTTTAACTTTTGGCGCCTCCTCTTCTCCACACAACCCTAACCCTTACATACAGC
CGACCAGACCGCCCGCTCCCGCTATCTACGGACCGCAGCGGGCGGTGTTCCCGCGTGTGGCTTGCAAGCCCACCCTTCTA
AACCTTATCGACCACAAGATTTTCTCGGTGAGCCCGCGTCCTACCACCTGAACCAGCAGGTGCGGGCCCAAGAATTTAAG
ACTGTGCATTCAAATTCTGAAAACTTTTTTTGG--AGCCTATGGTCTTCTTTTTGGCGCATATAACCAATTATAGCAGCA
>chr4A_1
TAGCAACGGCGGGTACTGACCCAGTAGGGTTAAAGTTACTATGGCGGGCGACACTTAGCACCCGCCAGTTCTAACTTGTG
AATAAATAAATATATGATCTTGTGGCTGGCGTAGATAATTGCCCGCGACTGCTAGAACTAGTTGCAGCGGCGGGCGTAGG
TAGTGACCTGCCACTAATCACTTTTAGGACGTGGGCACACCCATGGGAGCATACTTGTGGCGGGTGGTAGTTTCCGCTCG
CCACTGCTTTGGCATATCTAGTGGCGAGTGTTGTCTCGTACCCGGCACTGCTACTTTTTGAAATTAGCTATGGCGGGTGT
CACACCTCACCCTTCACTCATTTGGGTTCACCTATAAGCCCTTTCCCAGAAGTGCACTAAAGGAAAAATTGTTCCCTACT
ACAAACCTTTACACTTGAGTCTTCAAAACCTTGCTCTCCAATAGAAG-AGTAGC-AACACGGGCCAACTTGATCTACTCT
CGTAA------TGATGAAAAAATAGCAAATTTGTTAAAAG--CATGTCTAGGGCACATCAATGAAAATTAGGGGTAGTAG
TATGAGGAGATCCAAA---------ATTATATCTATGAGCGTTGAGT---AGATACTCCTTTGGATATCAATAATCAAGG
TGTGTTGTGTTAATGAATCTGTAGAAGTTATACGAGTGTC-------AATACTACAAGATCCAAACTGGGCATCAATGTG
TTTATGAATATAAAGAGCATTAATACCAAGAGATCCAAAACGAGC-----------------------------------
------------------ATCAATGTATTTGCGGATAGAGAGGGCACTAATACCAAGATATTTGAAATGAGCATTAACAT
ATGTGGCCACAGATTTGACATAAACCATACTTGTATCAAGGACCAAGGTGCATACTACATTTATGGAACCCCAGTGCACA
CATTATAAATAAATCTCAACCTCACCTCCATCCATTCATCCATCCATCTCTGCCCGACACATTTTCCTATTTCCAATTAT
CTCCACCACTCTTGACTTTAGTATATTTGAAGGCATTGTAGCTACCCTTGGGACAATGGGAACGCTGGAAGCCT------
------------CCATCA---------------TCTTCATGCTTCTTTCCATGATCGTCTCTGCTCAAGCAGGCAGCTCT
GGTAGTGGCAAGCCTAAGGCAACCGACCTCATGGTGGAAGCATGCAAGAACGCCTCGATT---GACTACTACATCGCGAC
GGTCCCGCAAGAATTTTGTTTGTTGACTCTCCAGTCAGACAAACGGAGCACCAACGCTAAGGATCTCCATGATCTGGTAT
TCATTGCCATCGACATCACCAAGGCTCGTGTCATTGCTGCGAGCGGCATGGTGAAGAAAATGTTGCAAAATGCCAAAAAG
GGTACGGTGACGATGCGCGTCCTTACTTTATGCGAGGTGGACTATGAACAAATGGCGAGCATCCTCAACATATGTGATGC
CATGATCAAGGACTACCAAGGATACAAGGGCGAGATGCGGTCCCATGAGCTGGCTGGTTGTGTGGCTGAGGCGTACAGCC
CGGCCGCCTACTGCCAAACCGAGCTTAACGATGCGCCAAAGGAAGTGGCGCTGGTCAAGGAAAATGCTGAGCTGCAAATG
CTAGTACACATGAGCGCTAACTTCCTAGAGCCACTCACATTGCCAGAAGAGATGTTATTTTGACATTAAATTTGCTCTTA
TTTGAAATAATGAGAATAATAATAATGTGATTTTATTATGTTTGAGATGCTGTGTACATCCGGTGAATATTATAAAATCT
GATCCTTTTCACAAAATAAACAAATAACAATAATAATGTTTATGGCACTCATTTTACTACTCCCGTCATACCTAAATATA
AGTGGTCTTGGTAGGATAGCAGTATATATGCACACACACCGCCACGTACATTCGGGCTGACGCCGGGGCCCCTGCAGGCT
GTAGACAAGCAGCACAC--GTACGGATCAGCCCATCAACAACTAACACGGACGCATCCAATCCCTCGTTTCTCATAGTCT
CATCTGTCTAAAAAAAAGATCCCTCGGAGCAGAGTAAGCTCTTGCCTATCAATAAATGATACGCAAATTTTACATACTCG
CGAAAAAAAGAGGAAGCTCTTCACATCTTATGGTGCCTCACATCTTCCCTAGCTTGGTAGTATGCAGATGTACGTTGGAT
GG--ACGTGATGCGCATGCCAACTAGAAATGCATAATCAGAATCAACCATATCAGCGTCTCTCGTCTCCTACAACTGTTC
CATAATTCTGCGACGACGGCGACCTACAGCATCTCTCGTCT-AAAGAAAGAAAAACCTCGGCCGAAGGTGACCTGGATGG
TTGATAATTCTGCAGTCCCATGTGACAG-AAAAAATAAAACGTTTCAGCCTATTATATCCAAGCCATAGAATGCGAATCC
CATGACTGTCATCCTCCTACTATTTGTTTTAACTTTTGGGGCCTCCTCTTCTCCACACAACCCCAACCCTTACATACAGC
CGACCAGGCCGCCCGCTCCGGCTATCTACGGACCGCAGCAGGCGGCGTTCCCGTGCGTGGCTTCATAACCCCCCCTTCTA
AACCTTATCGGCCACAAGATTATCTTGGTGAGCCTGGCTCGTACCACCTTAACCAGCAGAGGCGGGCCCAGGAATTTAAG
ACTGTGTATTCAAATTCTGAAAACTTTTTTTTTGAAGCCTATGGCCTTCTTTTTGGCGCATATAACCAATTGTAGCA---
>chr4A_362
CACT----------------------------------------------------------------------------
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---------------------------------------------------------TAAAAGAAAAAATGTTCCCTACT
ACAAACCTTTGCACTCGTGGCCCCAAAACCCTGCTCTCCAATATGAGAAGTAGG-AACATGAGGCAACTTGATCGACTCC
CAAAA------TGATTTAAAAATAGCTAATATGTTAAAAAAACATGTCTAGAGCACATCAAAGCAAATTAGACATGTTAA
TACGTGGATACAAAAA---------ATCGTACCTGTGAGCATTGAGT---TGACAGTCATTTGGATAACCATCATCAAGG
TGTGTTGCATTAATGAATCTCTATAAGTTATATG-------AATATTAATACGAGAAGGTCCAAAATGAGCATCAACGTA
TTTGTGAACATAAAGAGCATTAATGCCAAGAGATCCAAAACAAGC-----------------------------------
------------------ATCAATATATTCGTGAACATAAGGGGCATTAATATCAAGAGTTGTGAAATGT----------
------CCACATATTTGACACAAATCATACTGATATCCAGGACTAAGGTACATACTACATTTATGGAACCCCATTGCACA
CATTATAAATAAATCTCAACCTCACCTCCATCCATTCATCCAACCATCTCGGCCCCAT-CATTCTTCTACATCCAATTGT
CTCCACCTCTCTTGGCTTTAGTATCGTTCAAGGCTTTCTAGCTAAACTTGGGACAATGGCAATGTCAACAACCT------
------------CCATCATCTTCTCCGGCATTGTCTTCATGCTTCTTTCCACAACCATCTATGCTCAAGCGAGCGGCTAT
AGTAGTAGCAAGCGCAAGCCAAGCGACCTCATGGTGGAAGCATGCAAGAACGCCTCGATT---TACATCTACATCAGGGC
CGTCCCACAAGAATTTTGTTTGTCGACCCTCCAGTCAGATAGTCGGAGCACCGAGGCTAAGGATCTCCATGATCTAGTGC
TCATTGCCGTCGACATCACCAAGAGTCGCATCACTGCTGCCAGTGGCACGGTCAAGAAAATGTTGCAAAACGCGAAGAAG
CGTACGGTGGCGATGCGCGTCCTTAGTTTCTGCGTGGTGGACTATGAAGAAATGGTGAGTATCCTGAACGTATGTGATAC
CATGATCAAGGACTACCTAGGATACAACAGCGAGATGCGGTCCCATGAGCTGGC-------------------------C
CCGCCGGCTACTGCGAAAACGATCTTGACGATATGCCAAAGGAGGTGGCGCTCTTGAAGGAAAACGTTGAGCTGCAAATG
CTATTACACATGTGCGCTAACTTCTTAGAACCACTAGTATGAT--GAACAGATGTTGTTTTGACATTAAATTTGCTCTTA
TTTGAAATAATAATAATAATAATAAT------------------------------------------------------
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>chr7D_372
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----------------------------------------------------------------AAAATTGTTTCCTACT
TCATACCCTTACACTTGTGGGCCCAACACCTTGCTCCCCAATATAAGGAGTAGCAAACATGGATCAACTTGATCGGCTGT
CGAAA------T------AACATAGAAAATCTGTTAAAAG--CATGTCTAGAGTGCGCCAAAACAAATTAGACATATTAC
TATGAGAAGATATAAGAAATGCATCATCGTATATGTGAGCATTGAGTGTATAATAATCACTTAGATATCCGTAATCAAGG
TGTGTTGCATTAATGAATCTATATAAGTTTTATGAGTATTAAATATTAATACGAGAAGATCAAAA-TGATGGCACATGTA
TTTGAGAATATAAAGCGTATTAATACCAAGCGATTCAGTACGAGCATGAATGTACTTGTGAATATAAAGGGCATTAGTAC
CACGATATCTGAATGAGTATCAATGTATTTGTGTATATAAATGGCATTAATACCAAGATATCCAA---------------
--------------------------------------------AAGGAGCACACCACATTTGTGAAACCCCACTGAACG
CGATATAAATAAATCTCAACATCACGTGTATCCAATCATCCATCCAACTCTGCCTCACACATTCTTCTATATCCATTTAT
CTTTACCTCCCTTGGTTCTAGTGTAGTTCAAGGC-TTGTAGCTAGCCTTGACAAAATGGCAATATCGAATACCT------
------------CCATCATTTTCCCCATTATTGTGTTCGTGCTTCTTTCCACAAACATCCCTACTCAAGCTAGCGACTCT
GGTAGTGGAAACTCAAAGGCAACCAACCTCATGGTGGAAGCATGCAAGAACGCCTCAATT---AACTCCTACATCAAGAC
TGTCCCCGAAGAATTTTGTTTGTCGACCCTCCAGTCGGACATTCGGAGCATCAAGGCTAAGGATCTCCATGATCTAGTGC
TCATTGCCATGGACATCACCAAGGGCCGCCTCACTTCTGCTAGTGGCATGGTCAAGAAAATGCTGCAAAATGCCAAGAAG
GGTACGGTAAGGATGCGTGTCCTCCGTTTCTGTGAGGTGGACTATGAAGAAATGGCAAGCATTCTCAACATATGTGATGC
CATGATCAGGAACTACCAAGGATACAAGGGAAACATGCGGTTCCAAGAGCTGGCTAGCTGTGTGAATGACGCATATGACC
CTGCCGGCGCATGCGAAGAAGAGCTTCAAGATATGCCAGAGGAGGCGGCGCTGTTCAAGGAAAACACTGAACTGCAATCG
CTAGTATGGATGGGCACTAACTTCCTAGTCCCAATGGTAGTACCATAATAGATGTTGTTTTGACATCAATTTTACTCTTA
TTTGGAATAATAATAATAGCAATAAT------------------------------------------------------
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>chr7A_372
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----------------------------------------------------------------AAAATTATTTCCTACT
TAATACCCTTACACTTGTGGGCCCAACACCTTGCTCTCCAATATAAGAAGTAGCAGACATGGATCAACTTGATTGACTGT
CAAAATGAGCGT------AACATAGCAAATCTGTTAAAAG--CATGTCTAGGGTGCACCAAACCAAATTAGACATACTAA
TACGAGAAGATATAAGAAAGGCATCATCGTATATGTGAGCATTGAGTGTACAATAATTATTTAGATATCCGTAATCAAGG
TGTGTTGCATTGGTGAACGTATATAAGTTTTATGAGTATCAAATATTAATACAAGAAGAT-CAAAATGAGGACAAATGTA
TTTGTGAATATAAAGCGTATTAATACCAAGCAATTCAATACGAGCCTGAATGTACTTGTGAATATAAAGGGCATTAGTAC
CATAATATCTGAATGAGCATCAATGTATTTGTGGATATAAGTGGCATTAATACCAAGATATCCAA---------------
--------------------------------------------AAGGAGCACACCACATTTGTGAAACCCCACTAAACG
CGATATAAATAAATCTCAACATCACGTCTATCCAATCATCTATCCAACTCTGCCTCACACATTCTTCTACATCCATTTAT
CTTTACCTCCCTTGGTTCTAGTATAGTTCAAGGC-TTGTAGCTAGCCTTGGAAAAATGGCAATATCGACTACCT------
------------CCATCATTTTCCCCATCATTGTCTTCATGCTTCTTTCCACAACCATCCCTACTCAAGCTAGTGGCTCT
GGTAGTGGAAACTCAAACGCAACCGACCTCATGGTGGAAGCATGCAAGAACGCCTCAATT---AACTCGTACATCAAGAC
CGTCCCCAAAAATTTTTGTTTATCGACCCTCCAGTCGGACATTAGGAGCATCAAGGCCAAGGATCTCCATGATCTAGTGC
TCATTGCCATGGACATCATCAAGGTCCGCCTCACTTCTGCTAGCGCCATGGTCAAGAAAATGCTACAAAATGCCAAGAAG
GGTACGGTAAGGATGCGTGTCCTCCGTTTCTGTGAGGTGGACTATGAAGAAATGGCAAGCATTCTCAACATATGTGATGC
GATGATAAGGAACTACCAAGGATACAAGGGAAACATGCGGTTCGAAGAGCTAGCTAGCTGTGTGTTTGATGCATACCACC
CTGCCGGCGCATGCGAAGACGAGCTTCAGGATATGCCAGAGGAGGCGGCGCTGTTCAAGGAAAACACTGAGCTGCAAATG
CTAGTACGGATGGGCTCTAACTTCCTAGTCCCAATGGCAGTACCATAAGAGATGTTGTTTTGATATCAATTTTACACTTA
TTTGGAATAATAATAATA--------------------------------------------------------------
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>chr4A_902
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------------------------------------CATCTATCCATCTGTGCCATACACATCCTTCTATATCCATTTAT
CTCCACCTCTTTTGGCTTCAATATAGTCCGAGGC-TTCTTGGTATCTTTGCCACAATGGCAACAATGTCGACAACCCCCA
TTGCCTTGTACGCCATCA---------------TTTCCATGCTCCTTTCCATGGCCATCACAGCCCAAGCCAATGATATT
GGCAGTGGCAAGCCCAAGGAGACCGACCCCATGGTGGAAGCATGCAAGAATGCCTCGAGCTACAGCTTCAACCTCGATAA
TGTCACGCATGAATTTTGCTTGTCGACCCTCCGGTCAGACAATCGGAGCTTCAAGGCTAAGGACCACAATAACCTAGTAC
TCATCGCCATCGACATCCTAAAAGGCCGCATCCCTACTGCCAGCAGTAAGGTCGAGAAAATGCTACAAAATTCCACGAAG
GGTACAGT--GGATGCGCGCCCTCAGTTTCTGCAAGTTGGACTATGATGTCATGGTAAGAATCCTCAACATATGTGATGC
CATGATCAGGGACTACCATGGAT---------------------------------------------------------
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>SNPs
-----------------S-S-----------------------------SS-----------------------------
----S-----------------------------------------S-----S---------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------------------S--S-------
------------S---------------------------S---SS---S------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------S-----------------------------------------
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--------------------------------------------------------------------------S-----
S-------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
----------S---------------------------------------------------------------------
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------------------S-------------------------------------------------------------
----------------------------------------------------------S---------------------
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----------------------------------------------------S---------------------------
------------------------S-------------------------------------------------------
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-------------------------------S---------------------------------S--------------
-------------S-----SS--------------------------------------------------S--------
---S----------------------S-----S----------------------SSSSSSS-SS--S------------
-----------------SS-----------------------S-----------------S-------S-----------
----------------------------------------------------------S--S---------S----S---
-------S-S-----S-S------------------------------------------------------SSSSSSSS
SSSS------------S-------------S-----------SS------------------S-----S-----------
--------------------S---------S----------S---S---S---------------S--S-----------
---------------S----------S-S---------------------------------------S-----------
------------------------S--------------S-----------------------S----------------
-------S-----------S-------------------S-----S-------S-S-------SSS-S---S--------
----------S----------S---S--------S-SS--S--------S---------SS---------S---------
------S------------------------SS-----------S--------------------------S-----SSS
>forward_721
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-------------------------------------------------------------CAAACTGGGCATCGATGTG
C-------------------------------------------------------------------------------
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>reverse_2236
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---------------------------------------------------------------------------GTTGG
ATGTACGTGATGCGC-----------------------------------------------------------------
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