>input_sequence_74098
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-ATGGAAGCCTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGT
CCGAGTCCGGGATGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGATGCCACCTCCAGCTCCGGC
TCCTCCGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTG--CTCTGCCCGGAC
ACCGCG-GTTCTTTGTAGGCTCGAGCTCGATCTTGATTGAAGCTGTGGTCTGACATG-GCGTTCTTTTTCTCTTGGCGCA
GGAGGGGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCCGTGGGCGGCCTGGAGGACCTG
GCCAAGCCGCCGGGCAAGCGGATCAAGGCGTCCCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGCTTCGC
GCGCCGCAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGTAGGGCGCCGGCGCTCCGGCCGC
TGACGGCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTCTTCGTTTAG---------------------
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>chr2A_1_TraesCS2A01G393800
AACGAACTAGGTGGTAGCGGGCGCTAACCTGATAGCCAGAATTAGCATGGAGATCTCAAGAGAATCAACACAAACTACGC
CCACTACTTTTTTTGCTGCGTTGGGGAGAGCTAACGCTTGCGTACGTCTTTTGAATTGTGAGGCGTCTATAGATTACTAG
GAGCGTTGGAGGCAGGGACTCTTAAACGAGCGCTACACGAAAAAACAATTTCTTTTAATTGCTTAAGCGCCTCAACAAGC
GTTTAGCGTTGAAGATGCCCTTATGGTAGACTCTACCTAGAGTTGGCTGAGATAAGCA-AATTAATTGTATCAGCTTTCT
CCATCAATACCATATGCCACGAGAGTCTGTCGATAAGAAAATGAAGCAGGCTGCGGTCCCATACTCAGCCAATCCGAGCA
TGGTCAACTGAT-AAAGCACTCTATTTTACTCGACCCGATCCCCCATCAGAGCCGTCGACAAACAAAGATAAGGATCCAA
CGGTCCGAATGCGTAGCCAAAGCGTACTGCAATGGCACTATGCAAGCAT--AGCATACATCCCCAGGTTCCTCCCGGCTC
CACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACAC------CACCCCCACCACAGTGCGCGCGCAGACC
CGTCGCATCCTGCAAAGCCGTGCAAGAAAAACACGTGGATGCCTTATCCCC----------TCGACCCACTCCACGGAGC
CTGA--------CTGCCGCCGAGATGATAACCATCACGCCCGTATTTATCATCATCGTTTTTTAATTCCTGCTATTCTAT
TCTGCTACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCC---------TCCTCTGCCACGGCTCGTCATTCATTCTT
ATCCTCCTCCTCCCCCGGTACCTTTATAGCTTCCGAT-CCCCCGCTCCGTCCTCCAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CATCGTCCTGCTAGCACC
CGTGAACTCCAGCCATTCACGCTGCGTCGATCGTTTGGTTTGGTTTCGTGCGTTGCTGTGATCGTCTGATCTGCTCGGGA
GATGGAAGCCTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGT
CCGAGTCCGGGATGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGATGCCACCTCCAGCTCCGGC
TCCTCCGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTG--CTCTGCCCGGAC
ACCGCG-GTTCTTTGTAGGCTCGAGCTCGATCTTGATTGAAGCTGTGGTCTGACATG-GCGTTCTTTTTCTCTTGGCGCA
GGAGGGGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCCGTGGGCGGCCTGGAGGACCTG
GCCAAGCCGCCGGGCAAGCGGATCAAGGCGTCCCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGCTTCGC
GCGCCGCAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGTAGGGCGCCGGCGCTCCGGCCGC
TGACGGCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTCTTCGTTTAGGAGATTTCGCCCGCAGATTAG
TCGTGTCGTCGGTTGTGGCGTGCTCGAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGATG
GTGGCCGGCTGGTCAATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTTCCGTTTCGAATGCCAACTTATGGCTC
TCGTTTTGATGAACTAGTCAAAAATGTGGCAAAATGTGAAATGCTAGTCCTAGAACCAAATAACCCTTTAGTTTCACCAC
TCGTCTAGTAAGCAAGTTAGACATAGTATC--------------------------------------------------
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-------------------------------------------------------------------------------T
ATGTTGTTCTTCAC--ATTAAGGACAACTCTAATCAATCTCAAAAGTTAA--CTCAAACCCCAATTAACTTCCAAAGCGG
GGTCCCAGAACTGTTAACTCCCCCAAAACTCAGTATATTGGAAGGTTGGTTTCTTTGAACTACGAAAACGAATATATTTA
GGAACCAAAGGAGTAATCAAGTAATCAATCCCTAAAACTTAGCTCCCAATATTGTTCTTTTCCAATTTGTCTCATTATTG
TAG--ATGTAATCTTATTTCGACTTCATTCCAACGACATACTCCTTTCGTTTCTTTATATAAGGTGTATTTGTCATTTCT
TTTAGTTCCTCGTAATTCCAGTTTTAGCCCTCTAGAAAAAGAAAAATATTTTTTTCCGATTGTGTGCATCTCTTTTTATA
GCAAAAGAACGAAAGTCTCTCTCTCGATTGCATGTATCTCTTACTTTTCTGAACAAGTTGATTTACTTACCACAAGCCAA
TATATTTGCTAAAGGTAATTTCGTCCTAGCATGTATATAATTATGTGCCTTGGTCATCGTATCAAAAATAATACACCTTA
AATAACGAAACAGAGGAAGTATTTAATAAAACATTGATGTTTGGAGGTACGCGTTTCAATATTTCAAATGTCAATGTACG
AGATAAAATTCAAATCACACATATTCATAGATTACGCTGGAAGCAACAACATAGTTTAACCACCGGCAAGAACA
>chr2B_261
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--------------------TTATGATAGACTCTACCTAGAGTTCGCTGAGATAAGCAAAATTAATTGTATCAGCTTTCG
CCATCAATACCATATGCCACGAGAGTCTGTCGATAAGAAAATGAAGTAGGCTGCGGTCCAAAACTCAGCCAATCCGAGCA
TCGTCAACTGAT-AAAGCAGTCTATTTTACTCGACCCGATCCCCCATCAGAGCCGTCAAC-AACGAAGATAAGGATCCGA
CGGCCAGAATACGTAGCCAAAGCGTACTGCAACGCCACTATGCAAGAAGCAAGCATACATCCCCAGGTTCCTCCCGGCTC
CACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACAC------C----CCACCACAGTGCGCGCGCAGACC
CGTCGCATCTTGCAAAGCCGTGCAAGAAAAATACGTGGATGCCTTATCCCCTCCCCCCACGTCGACCCACTCCACGGAGC
CTGCCTGCCTGCCTGCCGCCGAGATGATAACCATCACGCCCGTATTTATCATCATCTTTTTTAAATTCCTTCTATTCTAT
TCTACTACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCCGCACCCCCCTCCTCTGCCACGGCTCCTCATTCATTCTT
ATCCTCCTCCCT--CCGGTACCTTTATAGCTTCCGACCCCCCCGCTCCGTCCTCCAAGC---------------------
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--------------------------------------------------------------TATCATCCTGCTAGCACC
CGTGAACTCCAGCCATTCACGCTGCGTCGATCGTTTGGTTTCGTGCGTGCGTTGTTTGTGATCGTGTGATCTGTTCGGGA
GATGGAGGCTTACATGCTGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGT
CCGAGTCCGAGGTGTCGGCGGCCGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGAAGCCACCTCCAGCTCCAGC
TCCTCCGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTGATCTCTGCCCGGAC
ACCGCG-GTTCCATGGAGGCTCT------ATCTTGATTGAAGCTGTGATCTGACATG-GTGTTCTTTTTCTCTTGGCGCA
GGAGGGGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCGGTGGGCGGCCTGGAGGACCTG
GCCAAGCCGCCGGGCAAGCGGATCAAGACGTCGCGGAGCTGCGAGGTCGGGCTGCAGGACGCGCACCGCCGGCGGTTCGC
GCGCCACAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGCAGGGCGCCGCCGCTCCGGCCGC
TGACAGCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTGTTCGTTTAGGAGATTTCGCCCGCAGATTAG
TCGTGTCG---GTTGTGGCGTGCTCAAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGAAG
GTGGCCGGCTGGTCGATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTTC-------------------------
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>chr2D_351
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-------------------------------GATAAGAAAATGAAGCAGGCTGCAGTCGAATACTCCGCCAATCCGAGCA
TCGTCAACTGATTAAAGCACTCTATTTTACTCGACCCGATCCCCCATCGGAGCCGTCGAC-GAAAAAGATAAGGATCCGA
CGGCCAGAATACGTAGCCAAAGCGTACTGCAACGCCCCCATGC---AAGCAAGCATACATCCCCAGGTTCCTCCCGGCTC
CACCGGATGGGGACGGTCGGCACGCCTGCGGGAAAGGGGGACACACCCCACCC----CCACCACAGTGCGCGCGCAGACC
CGTCGCATCTTGCAAAGCCGTGCAAGAAAAATACGTGGATGCCTTATCCCCTCCCCCCACGTCGACCCACTCCACGGAGC
CTGCCTGCC--------GCCGAGATGATAACCATCACGCCCGTATTTATCATCATCTTTTTTTAATTCCTTCTATTCTAT
TCTGCTACGAACTGACTTCTTTATCCCGTCCCGCGCGCATCCGCACCCCCCTCCTCTGCCACGGCTCGTCATTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCGTCCTGCTAGCACC
CGTGAACTCCAGCCATTTACGCTGCGTCGATCGTTTCGGGAGAT------CGTTGCTGTGATCGTGTGATCTGCTCGGGA
GATGGAGGCTTACATGATGTTCCCGCGGAGCAATGGAAAGAGCTGCGAGGAGGAGCAGGAGGAGGACATCGGCTGCCCGT
CCGAGTCCGAGGTTTCGGCGGCGGGCTCCATGCTGTCGTCGGACGAGGAGCTCGACGACGACGCCACCTCCAGCTCCAGC
TCGTCCGGATCCACCGACAACTTCCAGATGTCCTCCCTCATGGCGCAGCTCCCGCTCAAGTACGTGGTCTCTGCCCGGGC
ACTGCGAGTTCTTCCGAGGCCCGGCCTTGATC----TTGAAGCTGTGGTCTGACATGTGTGTTCTTTTTCTCTTGCCGCA
GGAGGGGTCTGTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTCGCGGCCGTTGGCGGCCTGGAGGACCTG
GCCAAGCCGCCGGGCAAGCGGATCAAGACGTCGCGGAGCTGCGAGGTCGGGTTGCAGGACGCGCACCGCCGGCGGTTCGC
GCGCCACAATGCCGCGGCCTTCAAGAAGGTGTCCAAAGGGCGGCTGTCCGCGCTCGGCAGGGCGCCGGCGCTCCGGCCGC
TGACGGCGAGCGCGGCGAGGCCCAAGGGCTTGCCCGTGCGGGCTCCGCTCTTCGTTTAGGAGATTTCGCCCGCAGATTAG
TCGTGTCG---GTTGTGGCGTGCTCGAAGAGCAGTTGGTGCGGTTGTTACGTGGATTTTGACATGGTAACTGACCGGAAG
GTGGCCGGCTGGTCGATGGATGTGTAAATACAGAAATGAGAAACATGCCTTGTGCAGTATCTACTCTCAGTGCGCTTA--
--------------------------------------------------------------------TAGTTTCATCAC
TCGTCTATTGTTCAAGTTAGATTTAGTATATGTTTTCTTTCCTCGAGAGTATGCCTCGGCGTACCATAGCTTTATAGAAG
GCAGAATTTGAGTTACAAGAAACTACACTCGCTGCGAACAACAAGCATAGCGCAATACCACATCCGAGCAACAACACCGC
AAAGCAAGCTACAACACAAAGGGCCTATCCTAATCGAAACTCAACACCGCGTCTTGACCGACACCGGACATCTCCGAAGA
ACACCAACTTCTGCAGAGCTTCACTTGTCGACGCACCATCCACTCCTATCGCCTAAGAGGAAGTGGCAAGTGGGTGGCAG
GACTCAATCCGGTCCACGCCGTCTTGGACACACCGGCGACAGGCGCACATAGCGTTGTAGAGGATCAAGAAGGACAGCGG
CGAACACCGAAGGGGGGCGACGAGGGGCCGGCCATGTCTCCAAACACAATGCTCACAGCAAAGGAACGACGTCGAAGACG
CCGCCATTGTGTCGATCCAACCGAATCGAGGCTTTCGCCCGGAGACAACCACAACTCCAGGCGAGTGAGGGAGGTGACGA
ACACGCCACGACGACGCCTCCAAGGAGCGGAATGGCATCCGCGGGTGCCATCGCCGGCGGCCCGACGGAAGTCGTGCAAG
ATTTTCATCCACGTGTCGCACCTCCCCACACCATCTAGAATCGGGCAACACCGTCCCAGAAGCTTCACACCGCCGCCACC
GCAGCACTTCGCCAATGTAGCTGCCAAGCCGAGGGCCATCGCCCGGACGCACAGCAAGGAGAACACCGGCCACACCATCA
ACGCCCTGCCTGGACAGGAACCGCAGCCACTCCGCACCTCCGGCAAGTCCAGGCCGCCCGCAACAGCCATCGCCCACTCC
AAGGGACAGCCTTGCGATGACTGGACCCACATCTCGACGAAGCCAAGCTGCACCATCGGGAGAGCATCGCTGCTCATCAC
GCCGAACAGAAGTGGCTGGCTGCTCGCTGCTCGCCAAGACTCCATCTTGGCCGAGCCTCACAACGTCGACTCCACCAAAC
TGACCGCGGACTCACGCTTCTGCCTCCGAACGGCGCCACAACCAGCCAGCCGCACCCTCGCCTCGCTCCCGACTCCTACC
AGGCCCGCCGCACCGCCAGGCCTCCTGCCGAGCTCCGGCCGCCACCCTCATCTCTGGCCAGCGCAGATCTGACTGGGCCG
AACCCTGCCACGAAGCGAACGCCGTGCTGCCACCAGCACGCGCGCTCCACTGCGACACGCCTGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGGTGCCAAACGTGGACGAGATATTTAGTGT
ATGTTGTTCTTCATATATTAAGGACAAGTGTACTCGATCTCAAGACTTAACGCTCAAACCCCACTTAACTTCCAAAACAC
GGTCCCAAAACTTTTAACT-CCCCAAATTTCAGTGTATTGGAAGGTTGGTTTC---------------------------
-------------TAATCACGTAATCAATCCCTAAAACTTAGCTCCCAACATTGTTCTTTTGCTATTTGTCTCATTTTAT
TGCACATGTAATCTTATTTCGACTTCATTCCAACGACATA----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S------------------S----------------------------------S
-----------------------------------------------------------S--------------------
-S----------------------------------------------------------S-----------------S-
---S-S----S---------------------S-S-----------S-S-------------------------------
-----------------------------------------------------SSSS-----------------------
---------S---------------------S------------------------------------------------
---S----------------------------------------------------S-------------S---------
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----------SSSS----------------------S-------------------------------------------
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--------------------------------------------SSSSSS---------------S--------------
------S--S----------------------------------------------------------------------
---------S-S-------------------------------------------------S---------------S--
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---------------S-------SS--S-------------------------------S--------------------
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---------------------------S----S-----------------------------------------S-----
-----S---------------------------------------------------S----------------------
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--------SSS-------------------------------------------------------------------S-
--------------S----------------------------------------S--S--S-S-SS--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---
-------S-SSS---------SS------S--------------------------------------------------
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-------------S-------------S-S--S--S-------S-S-----------------S------------S-SS
-------S----S------S-------SS-----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------S-----------------------------S-----------S-S------------S-SS
-SS-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_193
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-------------AGGGACTCTTAAACGAGCGC-----------------------------------------------
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>reverse_1500
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-----------------------------------------------------------CGTTCTTTTTCTCTTGGCGCA
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>forward_491
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-----------------------------------------------------------------------AGGATCCAA
CGGTCCGAATG---------------------------------------------------------------------
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>reverse_4604
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-------------------------------------------TGTGCCTTGGTCATCGTATCA----------------
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