>input_sequence_74053
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-----AT------------GGTGAGCGAGGAGGAAGAGGAGGGGCAGCTGCGGTGCGACGAGGGGTGGGGCAAGCGGAGG
CGCCCGAGGCGCCAGCGGCAGCGCGCGCCCAGCGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCA
CCGCGACCGGCACCTGCTCCCGTCGTCCTCGCCGGCGCAGGAGCACCGCTGCTCCGTGTGCGGCAAGGGGTTCCCGTCCT
ACCAGGCCCTCGGCGGGCACAAGGCGAGCCACCGCCCGAAGCCGGCCCCCGCCGGCGCGGACGAGCCCGCTGCCACGGCG
GCGGCCTCGCCCGCCGCGTCCTCGTCAACCACGTCCAGCGGCG------------CGGGCGGAGGTGGCAGGGTGCACGA
GTGCTCCGTCTGCAAGAAGACTTTCCCGACCGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCCGTCG
GCGCCTCCGCGGTCGCGAGCCGAGGGTTCGACCTGAACCTGCCGGCGCTGCCGGACATCGTCACCGAGCGCGAGCGGTGC
ATGCCGGCGCCGGCCGACGACTACGAGGAGGAGGTGCTCATCCCGCTGGCGTTCAAGAAGCCGAGGCTGATGATCCCGGC
ATAA----------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G236000
TGACATCACAGCGTGATCAACCATCCATTTGGCACACCACCCCGCTTCCATTACTACCGTAACTA---------------
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---------------------------------------------------------------------GTTTATAATTG
ATCCAAGTTCCATTTTCCCAAGAATTCCATCTTTATGACTAGTCAGAATGGGAGTAATTTCACTAGTAACATCACACATT
TCAATAAAAGATTGCTTATGTGGCAGCTAATTAATGAGGAGAGAGGAGTTTGTGGTAACTTAGCTAGTTACTGTAACATC
ACACATTTCAAGGCATAATGAGTCTATAGCCTAATAAATAAACTCTTTCATGATACCACTCATATGTTACTACCCACTAT
GAAAATAATAGCATAGATTAATAACATCGGCAAGTTACTACTTTATGTTACTCCCCACTGTAAACAGTCTCTTCCTCTTC
ACTGACCGTGAAATCTTATCAAGTTGTCCTTTCCACGACTGGGCAGAGAACAAGTCCTCTCTCACTTACTCTTCTTCACT
GACGTCTGACCGTGAATCTTATCAAGTTCTAGACCC-CAAAACAGCCGAATCATCGTCATAATCAAAGTCATCTCCCTCA
TCTCCCCCTATTCTTTTCGCACCACTTGGAAGCCTCCTCGTCCCTGCTTTCTAGTTGACCAAATGCTCTTCCAACTAACT
CTTCCTCCCTCCCATTGCTTAGTCCCAAAGAACCAACCACCACTTCCTCACTCGGTCTCTCTCTAATACACACACACACA
CACACACTGATGCATACACACACCAACAAACCACTGCATCACCACCAACGACTTCCCTACCACTACTCGCTCACCTCTCT
CCC--TCCCTTGTATAAAACCACCACCGGTTGCCCCGCCCTCTCCACCCACTCACCACTGCTCCATCACACACTTCCAG-
-------------------------------------TAGCTAACTTAACTACTGCCCACCACTCTTCCTTCGTGCCAGA
GAGAATCAGCAAGGCACGTTCTTGCGTGTGTTGGATCGGCGTACGTGCGTGCATGGCGGTGGACGCGGTTCGCGACGCGG
CGGCGAT------------GGTGAGCGAGGAGGAAGAGGAGGGGCAGCTGCGGTGCGACGAGGGGTGGGGCAAGCGGAGG
CGCCCGAGGCGCCAGCGGCAGCGCGCGCCCAGCGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCA
CCGCGACCGGCACCTGCTCCCGTCGTCCTCGCCGGCGCAGGAGCACCGCTGCTCCGTGTGCGGCAAGGGGTTCCCGTCCT
ACCAGGCCCTCGGCGGGCACAAGGCGAGCCACCGCCCGAAGCCGGCCCCCGCCGGCGCGGACGAGCCCGCTGCCACGGCG
GCGGCCTCGCCCGCCGCGTCCTCGTCAACCACGTCCAGCGGCG------------CGGGCGGAGGTGGCAGGGTGCACGA
GTGCTCCGTCTGCAAGAAGACTTTCCCGACCGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCCGTCG
GCGCCTCCGCGGTCGCGAGCCGAGGGTTCGACCTGAACCTGCCGGCGCTGCCGGACATCGTCACCGAGCGCGAGCGGTGC
ATGCCGGCGCCGGCCGACGACTACGAGGAGGAGGTGCTCATCCCGCTGGCGTTCAAGAAGCCGAGGCTGATGATCCCGGC
ATAACC-AAATCATCAAAGAATTTTTCAATCATCAACGGCCAGTTGATGAGTGAATC------------CCGTCGGTGTG
TATTCTTTTGGATTGCTTATGCTCGGCTGGCTGGTGATACGTACTCCCTCCGTCCGGAAATACTTGTCCTGAAAATAAAG
AAAATGAATGTATCTATAACTAAAATAAGTCTAGATACATCCATTTCTAGAACAAGTATTTCCGGACGGAGGGAGTACAC
ACGTAGTACCTCCTGCTTGCCAGCCAGCCAGTGGAGTGTAGAGGTCGATCGAGCTGGCCATCGATTGGTGTAGTACATAT
CTCTCTATATTTTCCATATAGTACGTAA------TGCATCTCAGTAGATCGCTTCTTTCATTGATTAATTTGTTTGGCGT
ACGTAATAACACAATTCAACGAGATTGATATGGTATACAGAGAGTACAACTAATTCTTCCATGTACTACACCAGACTAGC
TAGTAGTACTAGCAGTTGGGTAAAGACCGACTGACCAGCAATGAAATGTGCAGTTGCTTGCCGTGTCGGCCACTCTCGTC
GTGTGTGCGCCGCTAGACGCTACTG---GTAGCTTT------------GTCCGAACTTCCGAATTCAATCTTGGCCACCA
AAACATCTCGATCAGGAAGTAGCACTA-----GTTGGCTGTCTCTCTCTAGAATCGATCATTGGCCGGCCGTCGGCATGG
TGAAGGATATGAACGCAGCGTGAGCGGACCGGCCGGGGCAAAGTGGCAGTTCAGCGACCAGGCACGCACCGGGCGGCAGG
TGCAAGGGGAATGTCGATGGAAGATGCGGAGACCGGAGCTGTTTCCACCGAAAATGATACGAAGAAGTAGACAGCTGAAG
GTGCCACCACAACGGTGCAGCATGGGACATTTTCTAGA-----GGCGGCGATCGATTATTCGGTGAAAGTCGTGGCACAT
CATGGCCGGGATGAGCTTAAGTAAGGTGGATCACATGCGGAGTCCAGGCCCCTCCCGTATGCCCGGTTGCAGCTTTGCCA
TGTTCGAA
>chr4B_1
TGACATCACAGCGTAATCAACCATCCATTTGGCACACCACCCCGCTTCCATTACCGTAAGTACTTCCTCGTCAGTGTACT
TTTAATTTTGTTGGAGTGTCAAACTATCTCAAAATTTGATGAAGTTTGTGTAAAAATATATCAATATTTGTGAAACCAAA
TAGATATATGTCAAAAGTATATTTTATTATGAATTTAATGCTATTAATTTGGTGACATAAATATTGATGTATTATCATAA
AAATACGGTCAAACATAAAAAAGCTTGACTTTCCAACAAAGTTGAAAGTGTGCGTGAGCGAGAGCGTGCGCGTGGCAGAT
CTCTAAACTTCGCGTTTCTTTCTTCCGCCAGAAGAAAGAAAAGGCGACCTCGTCGCCAGGAGTCTTCCCCGCCGCCGCCG
TCCGGCGGCTCCCCTCCGTCGGCGGCCTCGGTCGTCGGTGGTGAGGGGGGTCGCCGGATCCACGCGTGTGGATCGTTTTT
TCTCTTGTAGATTAGGATTTTAGGCCGCTCATCGTCTTGGCTTCGGCTGCGGCGATGGCGGCGCTGAATAAAGTTTCTTC
GGATCCTACTCCAACAAGGCGATCGGTCCTATGGTTGGGGATGGATTTGACAATCAGTCTGTTCAAGCAAGGATTGTGTG
GCGGCGGCGACATCCTTGTGGTGGACCTGTGTCCTCGGGCTCCGCCGTTGCGACGACGTTTTCTCCAGCGCCGGCGCGGA
GCTTGGGAGATAGTCCAGGAGCGGATGCAGATTGTGGTCTGCATCGGCGGCATCTGGAGGATGGTGGATCGTGTGTTGGG
TTCGCGGTTCGTGGATGGCAGATGTGGTTTTCTCCTCCGGCGTTCTAGTCGTGTGGGGGTGCCAGATCTGGAGCTTGATG
GGGTGTCCGGGGTGTTGCCCCGGTCTGATTCGCTCAACGGTAATGGTTTTACCTTTGCTGAGCCACCTTGGAGGTCCGCA
AAGCTGCATATCAGCGATGGAGCCGCTACGAGCTCGGGTGTGAAGGTGATCCGTCATTTTTCCCTTTGGTGGCTACTGTC
GTGGTTTCAGAGGCAGGTGACGGGTGTTGGTGTCAAGTTCAGAGTTTTCTTCAATCTTGATTGTAAATTTAGTTCTTGGT
TGTTATTCCTTTGTGCAAAGGCTAGCTTTTTGCTGTCTTTTCAGTTTTGCGAGGTCGGTTACATGACTTGTACTATGATA
CTTATGATATAGATGAGACACGTATTATCATGAAAAAAACGAAGTTGAAAGTACACTCTTTAAAGAGTGGTTGATTATTG
ATCCAAGTTCCATTCTCTCAAAAAAAGAAAAATATCCTCTAC--------------------------------------
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------------------------------------------------------------------------TCTTCTTC
AATGACCGTG-AATCTTATCAAGTTCTCCTTTCCACGACCGGGTAGAGAACAAGTCCGCTCTCACTTACTCTTCTTCA--
-----CTGACCGTGATTCTTATCAAGTTCTGGACCCCGAAAGCAGCCGAATCATCATCATAATCAAAGTCATCCCCC---
------CCTATTCTTTTTCCACCACTTGGAAGCCTCCTCGTCCCTGCTTTCTAGTTGACCAAATGCTCTTACAGCTAACT
CTTCCTCCCTCCCATTGCTTAGTCCCAAAGAACCAACCACCGCTTCCTCACTCGGTCTCTCTCTAACACACA--------
------------CATACACACACCAACAAACCACTGCATCACCACCAACGACTTCCCTACCACTACTCGCTCACCCCTCT
CCCC------TGTATAAAACCACCACTGGTTGCCCCGCCCTCTCCACCCAGTCACCACTGCTCCATCACACACTAGCCAG
TAGCTACTTCCCTCCCTCGCCTCACTTCCCGAACCACTAGC-----TAACTACTGCCCACCACTCCTCCTTCGTGCCAGA
GGGAATCAGCAACGCACGTTCTTGCGTGTGTCAGATCGGCGTACGTGCGTGCATGGCGGTGGACGCGGTTCGCGACGCGG
CGGCGATGCCATCGCCGGCGGTGAGCGAGGAGGA---GGAGGGGCAGCTGCGGTGCGACGAGGGGTGGGGCAAGCGGAGG
CGCCCGAGGCGGCAGCGGCAGCGCGCGCCCAGCGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGTCA
CCGCGACCGGCACCTGCTTGGCTCGTCCGAGCCGGCGCAGGAGCACCGCTGCTCCGTGTGCGGCAAGGCCTTCTCGTCCT
ACCAGGCCCTGGGCGGGCACAAGGCGAGCCACCGTCCGAAGCCGGCGCCCGCCGGCGCGGACGAGCCCGCTGCCACGACG
GCAGCCTCGCCCGCCGCGTCCTCGTCAACGACGTCCAGCGGCGCGGGTGCGGGCGCGGGCGGAGGTGGCAAGGTGCACGA
GTGCTCCGTGTGCAAGAAGACCTTCCCGACTGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCCATCG
GCGCCTCCGCGGTCGCGAGCCGAGGGTTCGACCTGAACCTGCCGGCGATGCCGGACATCGTCACCGAGCGCGAGCGGTGC
ATGCCGGCGCCGGCCG------ACGAGGAGGAGGTGCTCAGCCCGCTGGCGTTCAAGAAGCCGAGGCTAATGATCCCGGC
ATAGTTTAAATCATCAAAGAATTTTTCAATCATCAAC---CAGTTGATGAGTGAATCGCGTGTCCCGTCCCGTCGGTGTG
TATTCTTTTGGATTGCTTATGCTCGGCTGGTTGGTGATACGTACACAC--------------------------------
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-----GTACCTCCTGCCTGTCAG----CCAGTGGAGTGTAGAGGTCGATCGAGCCGGCCATCGATTGGTGTAGTACATAT
CTTGCTATATTTTCCATATAGTACGTACTAGTACTGTATCTCAGTAGATCGGTTCTTTCATTGATTAATTTGTTCGGTGT
GAGCATCATAATTG---AACGAGATTGATATGGTATACAGAGAGTACAACTAATTCTTCGACGTATGCCAGAC-------
---TAGTACTAGTAGTTGGGTAAAGACCTACTGACCAGCAATGAAATGTGCAGTTGCTTGCCGTGTCGGCCACTCTCGTC
GCGTGTGCGCCGCTAGACGCCACTA---GTAGCTTTGTCAAACTACTAGTCCGAACTTCCGAATTCAATCTTAGCCACCA
GAACACCTCGATCAGGAAGTAACACGA-----GTTGGCAG----TCTCTAGAATCGATCATTGGCCGGCCGTCGACATGG
TGAAGGATATGAACGCAGCGTGCGCGGACCGGCGGGGGCAAAGTGGCAGTTGAGCGACCAGGCACGTACCGAGCGGCAGG
TGCAAGGGGAATGTCGATGGAAGATACGGAGACCTGAACTGTTTCCACTGAAAAAGATGCGAAGAAGTAGACAGCGG-AG
GTGCCACCACAAGGGTGCAGCATGGAACATTTTCTAGA-----GGCGACGACCGATTATTCGGTGAAAGTCGTGGCACAT
CAT-------------------------GGTCACACGCGGAGTCCA-GCCCCTCCTGTATGCCCGGTTGCAGCTTTGCCA
TGTTCGA-
>chr4D_482
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-----CTGACCGTGAATCTTATCAAGTTCTGGACCCCCAAAACAGCCGAATCATCGTCATAATCAAAGTCATCTCCC---
------CA-----------CACCACTTGGAAGCCTCCTCGTCCCTGCTTTCTAGTTGACCAAATGCTCCCACAACCAACT
CTTCCTCCCTCCCGTTGCTTAGTCCCAAAGAACCAACCACCACTTCCTCACTCGGTCTCTCTCTAACACAG--------A
CACACACTGATGCATACACACACCAACAAACCACTGCATCACCACCAACGACTTCCCTACCACCACTCGCTCACCCCTCT
CCCCCTCCCCTGTATAAAACCACCACTGGTTGCCCCGCCCTCTCCACCCAGTCACCACTGGTCCATCACACACTTCCAG-
-------------------------------------TAGC-----TAACTACTGCCCACCACTCTTCCTTCGTGCCAGA
GAGAATCAGCAAGCCACGTTCTTGCGTGTGTTGGATCGGCGTACGTGCGTGCATGGCGGTGGACGCGGTTCGCGACGTGT
CGGCGATGCCATCGCCGGCGGTGAGCGAGGAGGA---GGAGGGGCAGCTGCGGTGCGACGAGGGGTGGGGCAAGCGGAGG
CGCCCGAGGCGCCAGCGGCAGCGCGCGCCCAGCGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGTCA
CCGCGACCGGCACCTGCTTGGGCCGTCCGAGCCGGCGCAGGAGCACTGGTGCTCCGTGTGCGGCAAGGGGTTCCCGTCCT
ATCAGGCCCTCGGCGGGCACAAGGCGAGCCACCGCCCGAAGCCGGCGCCCGCCGGCGCGGACGAGCCCGCTGCCACGGCG
GCGGCG---------------TCGTCAACGACGTCCAGCGGCG------------CGGGCGGAGGTGGCAAGGTGCACGA
GTGCTCCGTGTGCAAGAAGACCTTCCCAACCGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGAGGGCCCCATCG
GCGCCTCCGCGGTCGCGAGCCGAGGGTTCGACCTGAACCTGCCGGCGCTGCCGGACATCGTCACCGAGCGCGAGCGGTGC
ATGCCGGCGCCGGCCG------ACGAGGAGGAGGTGCTCAGCCCGCTGGCGTTCAAGAAGCCGAGGCTAATGATCCCGG-
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---TGTGCGCCGCTAGACGCTACTACCAGTAGCTTTGTCAAACTACTAGTCCGAACTTCCGAATTCAATCTTAGCCAACA
AAACATCTCGATCAGGAAGTAACACTAGCAGTGTTGGCAG----TCTCTAGAATCGATCATTGGCCGGCCGTCGGCATCG
TGAAGGATATGAACGCAGCGTGCGCGGACCGGG------AAAGTGGCAGTTCAGCGACAACGCACGTACCGGGCGGCAGG
TGCAAGGGGAATGTCGATGGAAGAGACGGAAACCTGAACTGTTTCCACTGAAAAAGATACGAAGAAATAGACAGCGGAAG
GTGCCACCACAACGGTGCAGCATGGAACATTTTTCTAGAGGGCGGCGACGATCGATTATTCGATGAAAGTCGTGGTACAT
CATGGCCGGGATGAGCTTAAGTAAGATGGATCACATGCGGAGTCCAGGT-CCTCCCGTATGTCCGG-TGCAACTTTGCCA
TGTTCGA-
>SNPs
--------------S---------------------------------------SSSSSSS---S---------------
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------------------------------------------------------------------------S--S----
--------------S--S---S--SSSS-SSS-SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----
-S--------S--------------S-------------S---S-------------S--------------------SS
SSSSS-------------------------S----------------------------------------------SSS
SSSSSS-----------SS---------------------------------------------------S---------
------------------------------------------------------------------S-----SSSSSSS-
---------------------------------------------------------------------------S----
---------S----------------S-----------------------S-----------------------------
-----------------------------------------SSSSS----------------------------------
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----------------------------------SSS-------------------------------------------
-----------------------------------------------------------------------------S--
------------------SSS-------SS--------------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------S----------------------------------------S---------
---------S-----------S------------------------------------------------------S---
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----------------SSSSSS------------------S---------------------------S-----------
---SSS-------------------------------SSS----------------------------------------
------------------------------S-------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------S--S---SSSS---------------------------S-------------------------
--SS-----------------------S--------S--------------S----------------------S--S--
SS-S-SS-SS-SSSSSS------------------------------------------S-S---SSS--SSSSSSSSSS
SSS---------S---------------S---------------------------------------------------
-S----------------------S-----------------------------------------------S-------
---------------------S----------------S-SSSS------------------------------------
----------------------S----------S--------------------------------S-------------
-------------------------S--------S--S----------S-----S--------------------S----
-------------------------S---------------------S--------------------------------
-------------------------S------------------------------------------------------
-------S
>forward_59
---------------------------------------CCCCGCTTCCATTACTACCG---------------------
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>reverse_3005
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--------------------------------------------TCCCTCCGTCCGGAAATACT----------------
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