>input_sequence_74025
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--------------------------------------------------------------------------ATGACG
CTTCTCTTGCTGCATGCCTTGCTGCTGGCAAGTGCAGCTGCGGCAG---CAGCAGCAGCATCTGAGGCCGGCGACACTGC
AGGCGGCAACGCTACTGCAGGCGGCAACGCCACCACGGCTCAAGGCCTATGCAACGGCGCCGGGTGCCAGCCACCGCCGC
AGCCGCTACCGATCTACGGCGGCCCTCCGCCGTCGCCGCCGTCGACGACGCCGCCCTCCCCGGGCATGCAGGCGCCGTGC
CCGCCGGTGACGCCCGTTTGCTGCGGCGGCCAAAACACGCCTCAGCAGCCGTACTACCAAGCGCCTCCGATCGGCTACCT
TCCCTACTACAACGAGTCTGCTTCTTCGGTGCTCGTGCCACCGACTCCGGTCGCCGCCGTTGCGTATTACGTGATCGTAC
CATGTCTCTTGCTTTGGGTTGTGGTGTAACGGTGATCACTGAAGCCTCGTCCAACATCAAGAGAAGATTGG------GCT
CCACATACAAAAAAAAAAG--CTGTACTAGAAGCAGGGGTACGTCTTGCCATGCCGTTTTTCTC--TGTCGTTGTAAAGC
CGGTTCTATAGCGGAAGTATCTTTCTCACCTCGAGCTCAAATGCTTTTGGCA-TGAATAGTATA----------------
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>chr7A_1_TraesCS7A01G179200
TTTGCGGGACTGGAACAGAAGCTGTAAAACTTATTGCTTGACCGTACGATCTCACCAGATCACATTATGATGCAAGATTT
GGTGTTTCACCAAGTAGGAGGCTAAACACTGAGAATTCTTGAGGCGTCAGTTAACTCTCTATGCCCGCAATATTTGGGGT
ACTCAGGAAAGTTGCAGGTTCTGCTTTGCTTTT-CCCGTCCTGTTGGTTCCCTGCGGCAGTCGTTTTTTTATCGGTCTGG
TCCGACTTATGTACTTGCTGCCAGAGTGCTCGTTGCTGATTTTTGGCAACAACAAAAAATGGC-----------------
---------ATGTGATTTATTCTTCAATTATCTGGAAAGCTCAGGGTGATCACTCATGTGATTTTCGGGAGTATTAGAAA
AAAAACAACTTTACAAATAACTGTTGATATGCTCTTGTGTTGAAACTGAAGTACTGAACCGGAGATCTTAGGACAGTGTT
GGATTTGAACAGTTATTTGTAAAGCTGT-TTTTGTGTTTGGCACAAAAAACACGAGTTTAGCACATCCAACACATCGCAT
TTCTTGTGTTGGATGAGCTAAACTTGTGTTTCTTGTGTGGAGAATCTCATGCTTTTCGTTGGAAAAGTACGGTAGCTAGG
CACCGCAACTGCGATTGCACTATGACAAGGTGGCTGACGTAGCTGAAGATAGTCGTGGTGTAGCCCCAGTATGCACACAC
GTTGAATCGATAAAATAGAACTGGAAACTACTTTTGTTTTCTT-CCCTTGAATCTTGCTGGAAACAGCTGCTACGTACGC
ACTCGTCGTGTATATCCAGTTAT---GAAGCTGAGCT-TGAGTGAAGAGACAGAGCGGCCAGTGTCTCCATCTCCATAAG
CTAGCGTAGGGCGTCTCAGCCTGCAACACATGGCTCTCCATGTGTCACGGTGCATGCAACCCTACCTCTACACCCGAACC
GGTTATATGACCCTCCACCGCAACACACGGACGCCAAGA-ATATCCAACAACAGCTACGGCAACATCCAACACTATGACG
CTTCTCTTGCTGCATGCCTTGCTGCTGGCAAGTGCAGCTGCG---GCAGCAGCAGCAGCATCTGAGGCCGGCGACACTGC
AGGCGGCAACGCTACTGCAGGCGGCAACGCCACCACGGCTCAAGGCCTATGCAACGGCGCCGGGTGCCAGCCACCGCCGC
AGCCGCTACCGATCTACGGCGGCCCTCCGCCGTCGCCGCCGTCGACGACGCCGCCCTCCCCGGGCATGCAGGCGCCGTGC
CCGCCGGTGACGCCCGTTTGCTGCGGCGGCCAAAACACGCCTCAGCAGCCGTACTACCAAGCGCCTCCGATCGGCTACCT
TCCCTACTACAACGAGTCTGCTTCTTCGGTGCTCGTGCCACCGACTCCGGTCGCCGCCGTTGCGTATTACGTGATCGTAC
CATGTCTCTTGCTTTGGGTTGTGGTGTAACGGTGATCACTGAAGCCTCGTCCAACATCAAGAGAAGATTGG------GCT
CCACATACAAAAAAAAAAG--CTGTACTAGAAGCAGGGGTACGTCTTGCCATGCCGTTTTTCTC--TGTCGTTGTAAAGC
CGGTTCTATAGCGGAAGTATCTTTCTCACCTCGAGCTCAAATGCTTTTGGCA-TGAATAGTATAATAAAACATATTCCCT
CCGTTTCAAATTACTCGTCTCAAAAATGAATGTATTTAGAATTAAAATACATCTCGATACATCCATACATACAAGTAATT
CGAAAAGGAGGGAGTAGAAGATAATTTCAAAAAAAAAATCTGATTTTTTCTTTTTTGCAAAGTTTAGTGAATGTTAGAGT
ACTAGCAATGTTTCATCATGAAATCACATCGATGAAAGTCAGTGGCAGAAAGAAAAAGGAAATCAAAGCTCTAAAATGCA
TTCTAAAGTACCATCACTAGTTTGCAACTGATACGGAGCTAGCTCGTTTATTGGATTTGGATTGGCTCCTAGTGACCGGG
ATCTAGCCGATCCCCTAAATCCTGTAGTGAAGTATACCCAAGCATCTATTCCAGCCAAGGTTTTTCTTTGAGAACAGACC
ACTTATATGAAAGTGATCCGTGGTGAATAGCGTACGTGCCGCGTGATATTAATTTGGTTCACGGCGGGGTAGAAAGGCGT
TGTGGATACAAGTTTTTGATTGAAATTTTTTGAACGGGTGTGGCTATCGATTTGGTTGGTTTAGCGTTTTTGTACTGCAT
GTGGGGTAGGTTGATTTGTTTGGTAATTTTGCGTACTCCCTCCGGTCCTTTTTACTCTGTATATTAGAATTTTTTGAAGT
CAAACTTTATAAAATTTGATCGTATTTATATCAAAAAATATCAACATCTAACGTGCTAAAGTTATACAATATCAAAACTT
TAAGTCATGACACATCTATTGATATTGATTTTAGATTGTAAATGTTGATACTTTTTTATATAAAGTTGGTCAAACTTTAC
AAAGCTTGATTTCAGTCAAATTTTATATGCGAATTAAAAAAGACCGAAGGGAGTACTTACTTTGCGTCACTGTCGCGTTG
GAATTTGATGCTTTCATGTATTTGAATTGGCCATGCGTTTGTCTCCCGGCCGCTGTTGCCCGATCGATGCGTCGCTTTCT
TCTGTTCTTGCCGCTGTTGGTGTC
>chr7D_10
---------CTGGAACAGAAGCTGTTAAACTTGTTGCTTGACCGTACGATGTCACCAGATCACAGTATGATGCAAGATTT
GGTGTTTCACCAAGTAGGAGGCTAAACACTGAGAATTCTTGAGGCGTCAGTTAACTCTCTATGCCCGCAATATTTGGGGT
ACTCAGGAATTTTGCAGGTTCTGCTTCACTTTT-CCCCTCCTGTTGGTTCCCTGCGGCAGTCCTTTTTTTATCGATCTGG
TTCGGCTTATGTACTTGCTGCCAGATTGCTCGTTGTTGATTTTTGACAACAATAAAAAATGTC-----------------
---------ATGTGATTTATTCGTCAATTATCTGGAAATCTCAGGGTGATCACTC--GTGATTTTCGGGAGTATTAGAAG
AAT--CAACTTTACAAATAACTGTTCATATGCTCTTGTGTTGAAACTGAAGTACTGAACCGATGATCTTAGGACAGTGTT
GGATGTAAGCAGTTATTTGCAAAGCTGCCTTTTGTGTTTAGCACAAAAAACACGAGTTTAGCACATCCAACACAATACGT
TTTTTGTGTTGGATATGCTAAATTCGTGTTTCTTGTGGGGAGAATCTCACGTTTTT-GTTGGAAAAGTATGGTAG----G
CACCGAAACTGCGATTGCACTATGACAAGGTGGCTGACGTAGGTGAAGATAGTCATGGTGTAGCCCCAGTATCCACACAC
GTTGAATCGATATAATAGAACTGGAAACTACTTTTGTTTT-TT-CCCTTGAATCTTGCTGGAAACTGCTGCTACGTGCGC
AC---TCGTGTATGTCCAGTTATCTCCAAGCTGACCTTTGA--GAAGAGAC-GAGCGGCCATTGTCTCCATATCCATAAG
CTAGCGTAGGGCACCTCAGCCTCCAACACATGGCTCCCCATGTGTCACGGTGCATGCAGCCCTACCTCTACACCCAGACC
GATTATATTACCCTCCACCGCAACCCACGGACCCCAAAGGATATCCAACAACAACTACGGCAACATCCAACACCATGACG
CTTCTCTTGCTGCACGCCTTGCTGCTTGCAAGCGCGGCTGTG---G---CAGCAGCAGCATCTGAGATCGGCGACACC--
----------------GCAGGCGGCAACGCCACCACGGCTCAAGGCCTGTGCAACGGCGCCGGATGCCAGCCGCCGCCGC
AGCCGCTGCCAATCTACGGCGGCCCTCCGCCGTCGCAGCCGTCGAGGACACCGCCCTCCCCGGGCATGCAGGCGCCGTGC
CCGCCGGTGACACCCGTTTGCTGCGGCGGCCAAAACACGCCTCAGCAGCCGTACTACCAAGCGCCTCCGATCGGCTACCT
TCCCTACTACAACGAGTCTGCTTCTTCCGTGCTCGTGCCACCGACTCCCGTCGCCGCCGTTGCGTATTACGTGATCGTAC
CATGTCTCTTGCTTTGGGTTATGGTGTAACGGTGAACACTGAAGCCTCGTCCAAAATCAAAAGAAGATGGG------GAC
TCGCCAT----AAAGAAAG--CTGTACTAGAAGAAAA-GTGCGTCTTGCCGCACCGTTGTTCGCTTTGTCGTTGTAAAGC
TGGTTCTATAGCGGAAGTACCTT------CTCAAGCTCAAATGCTCCTGGCA-TGAATAGTAAAATTAAAA---------
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>chr7B_10
---------CTGGAACGGAAGCTGTTAAACTTATTGCTTGACCGTACGATTTCACCAGATCATAGTATGATGCAAGATTT
CGTGTTTCACCAAGTAGGAGGCTAAACACTGAGAATTCTTGAGGCATCAGTTAA--CTCTCTGCCCGCAATATTTGGGGT
ACTCAGGAAAGCTGCAGGTTGTGCTTCGCTTTTCCCCCTCCTGTTGGTTCCCTGGGGCAGTCGTTTTTTTATCGGTCTGG
TCCGGCTTATGTACTTGTTGTCAGATTGCGCGTTGCTGATTTTTGGCAATAAATAAACATCATCTGGTTTATTCTTTTGT
TTGCAGGTAATGTGATTTATTCTTCAATTATCTGGAAAGCTCAGGATGATCAATCATGTGATTTTCGGGAGTATTAGAAA
ATCAACT--TTTACAAATAACTGCTCATATGCTCTTGTGTTGTAACTGAAGTACTGAACCGAAGATCTTAGGACAGTGTT
GGTTGTGAGCAGTTATTTCTAAAGCTGTTTTTTGTGTTTAGCAC-AAAAACACGACTTTAGCACATCCAACACATCGCGT
TTTTTGTGTTGGATGTGCTAAACTCGTGTTTCTTGTGGGGAGAATGTCATGTTTTTCGTTGGAAAAGTATGGTAG----G
CACCGAAACTGCGTTTGCACTATGACAAAGTGGCTGACGTAGGTGAAGATAGTCGTGGTGTAGCCCCAGTATGCACACAC
GTTGAATCGATATAATAGAACTGGAAACTACTTTTGTTTT-TTCCCCTTGAATCTTGCTGGAAACTGCTGCTACGTACGC
AC---TCGTGTATATCCAGTTATCTCGAAGCTGACCA-TGA--GAAGTGACAGAGCGGCCAGTGTCTCCGTCTCCATAAG
CTAGCGTAGGGCATCTCAGCCTCCAACACATGGCTCTCCATGTGTCACGGTGCATGCAGCCCTACCTCTACACCCAGACC
GATTATATAACCCTCCACCGCAACACACGAACGCCAAGA-ATATCCAACAACAACTACGGCAACATCCAATACTATGACG
CTTCTCTTGCTGCATGCCTTGCTGCTTGCCAGTGCAGCTGCG---G---CAGCAGCAGCATCTGAGGCCGGCGACG----
--------------CTGCAGGCGGCAACGCCACCACGGCTCAAGGCCTGTGCAACGGCGCCGGATGCCAGCCACCACCGC
AGCCGCTGCCGATCTACGGTGGCCCTCCTCCATCGCCGCCATCAACGACACCGCCCTCACCGGGCATGCAGGGACCGTGC
CCGCCGGCGACACCCGTTTGCTGCGGCGGCCAAAACACGCCTCAGCAGCCGTACTACCAGGCGCCTCCGATCAGCTACCT
TCCCTACTACAACGAGTCTGCTTCTTCAGTGCTCGTGCCACCGACTCCCGTCGCCGCCGTTGCCTATTACGTGATCTTAC
CATGTCTCTTGCTTTGGGTTGTGGTGTAACGGTGAACACTGAAGCCTCATCCAACATCAACAGAAGATTGGAGATTGGAC
TCGCCAT----AAAGAAAAGACTGTACTAGAAGGAGGGTTGCGTCTTGGCACGCCCTTTTTCTCTTTGTCGTTGTAAAAG
TGGTTCTGTAGCCAAAGTACCTTTCTCAGCTCAA-CTCAAATGCTCCTGGTCGTGAACAGTAAAAT--------------
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>SNPs
SSSSSSSSS----------------S------------------------S-------------S---------------
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--------------------------S----------S------------------------------------------
----S--------------------S--------------------------S--------S------------------
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--S----------------------S-----------------------------------S------------------
----S---S------------------------------S--------------------------------------S-
--S------------S--------S------------S-------------S-----------------S-----SSSS-
-----S------------------------------------S-------------------------------------
------------S---------------------------S------------------------S--------------
--SSS-----------------------------S------SS-------------------------------------
------------S---------S-----------------------------------S----------------SS---
-S------S--------------------------------------------S--------------------------
--------------------------S-------------------SSS----------------------------SSS
SSSSSSSSSSSSSS----------------------------------S--------------S----------------
-------S-----------------------------------------S------------------------------
-----------S--------------------------------------------------------------------
---------------------------S--------------------S-------------------------------
-----------------------------------S------------------------S-----------------SS
S-S-SSSSSSS---S------------------S------S----------S----------------------------
S------------------S--------S---S------------SS---------------S---S---SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_559
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-----------------------------------------------------------AGCACATCCAACACATCGCA-
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>reverse_1476
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-----------------------------------TCACTGAAGCCTCGTCCAAC-------------------------
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>forward_957
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---------------------------------------------------------AACCCTACCTCTACACCCGA---
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>reverse_2147
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------------------------------------------------------------------GGGTAGAAAGGCGT
TGTGGA--------------------------------------------------------------------------
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