>input_sequence_74012
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----------------------------------------ATGGCCGCTGCTTGGTGCCCCTCTTTCCCTACTCTCTGCG
TGGTGGTAGTAATAGTAGTGGTACTCATCGGCGGCGGTGGCGCTGCGTCTGCGGCGGACGAAGAAGGCCTC---ATCCAC
CTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAAGTAAGC
ATCCAA-----AGCTTTGTATGCATCTGCTGGCGCATAT-------CACATGTATATTCACGTGGAATAATATGGCGCAG
GAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCGGGCATCGCGGCTCGTGG
GCAGGGCGCAGGGCCTGGCGCTCCACGCGTCGCTGGACGAGTCCGGCGGGCTCACGGCCATCACCTTCTTCTTCTCCGAC
TACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGTCGG
CGGCACGGGCAAGCTTCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAACTCCACGGACACCTCCATCGTGGTCG
TCTTCGACATGTATTTCACCCTGGCTCGCTGA------------------------------------------------
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>chr7D_1_TraesCS7D01G515300
GGCAACAGGAAATTAGGAGGGTTACCATCCTAACTAAGATGAGCATGGTTCTCAAAAGAAAATTTAGCAAAACGATGCGC
CACCTGATTCACTTCTCTTGGGACATGTTGGAAAGAAACTCCATTAATCATCTAAGCTCGGGTAAAGCAATCTGAGAGGA
TTGCTGCATAAGGACCAAACACCTCCATCTCTCCTCCACATAATTTGATGATCTCTAGATAGTCTGATTCAATAGTGACA
TTCGTACAACCAGAGACTCTAAGAGTTCAATACCTTTTTGGAGCACAAGGGCTTCCGCAGTAGCCGCATCAAGGACTTGA
GACAAAGGACTTGCCACACCAGCAATTGCTTCTCCAATGCTGTTTCGAAGAACAACTCCCACAGCTCCAGTTCCATTATC
ATGAAAAGTAGCATCGAGTTGCTCTGTGGGTGAGGTATCAAAGGCGGATGTTGCAACATTCGAAGAGCTGACTTGCCGAT
GTGCCAGTTCATTACGATTTAGTGCATTTTGGTTGGTAATAAGAGTTGCATGCGTCACGGAGATGAGGACTCGGCACAGG
TAATCTCACCAAATTTGCTTTTAATCTTGCTATAGGTAGACATGTTTGGTTGGCAATCCTCTTGATCCAACAGTTGTACA
TATGGACATTACTTTGAATCAATAAAGGTTGGCGAGATTTTTTCTCAAAAAAAGAGTAGCTTTGTAGGTCACTGGACCAG
CTAGCGGAGAGTGAGATATCATGGCTGGCTCACTCTTGTTTTGATTCCAACAATATCAGTGGTTATCAACTCCATCTGCA
TAGGGGATTGATGATGTGTCGATGGTTCCATCCGATTTACTTACATAGTGCATTTGGTTGGTAAGAGCCACACACGTCAG
GACAGAGACTCCCCACTGAAAACATGTACAAGCAGTTGGGTGCGTTTGGGATAAACAGAGCAACCACCGCGGGTGAACAA
GCAGGATAGCTCAACCTCTCACAGGAGCCTGATCCAGAGCATGGCCGCTGCTTGGTGCCCCTCTTTCCCTACTCTCTGCG
TGGTGGTAGTAATAGTAGTGGTACTCATCGGCGGCGGTGGCGCTGCGTCTGCGGCGGACGAAGAAGGCCTC---ATCCAC
CTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAAGTAAGC
ATCCAA-----AGCTTTGTATGCATCTGCTGGCGCATAT-------CACATGTATATTCACGTGGAATAATATGGCGCAG
GAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCGGGCATCGCGGCTCGTGG
GCAGGGCGCAGGGCCTGGCGCTCCACGCGTCGCTGGACGAGTCCGGCGGGCTCACGGCCATCACCTTCTTCTTCTCCGAC
TACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGTCGG
CGGCACGGGCAAGCTTCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAACTCCACGGACACCTCCATCGTGGTCG
TCTTCGACATGTATTTCACCCTGGCTCGCTGACTCGCACGCGCGCGGAACGAGCGTAGTACAAGGGTGTACATTTCGAAG
CAAAGCTGTTAGGGAGTTGCTGTCATACAGTATATTTACCCAAGTAATCAATCCTGCTG----GCTGATACATTACCAAT
AATCAATCTTGCTCTAATTAATGCAAGTGGGTTTGTGCTGGATGCTGGAATGTTTTAAAAAAATATTACTATTACTTAAA
AA--AATCCGAAACTATATGTTCAAATTCTAAAATTACAATTCCATGAACCTGTCAGCTTCCCTTAGCCTGAAGAGTGAC
TCTTCGGCCTCGCTTGGCCTGAAGATGTCCTTTTCGGACTCTGTTGGGCCAAAGACCCCTCTTCGGCCTCCCTTACATAA
GAAGAGTCACGCTTCTTCCTTCTGGTGAAGGCTGAAGAGTGTCCTACATTGCTCATCAACCCCACCTTATACACCATAAC
TCCTTCCAGTTAAACCTTCGCGGCACTAGGACCACATCGATTAGTAGAATCCATTTAGATGAAGAACAA-----------
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-CTCTTCAATTTACAAACAACCTCTATCTCAAAACTTCTCGCATAACTAGGGAAGAAACTTACAGCTCGACGATCCACTT
GCAAACTCAAACACCAAACCCAAAATCACACGCTATGTTTGAACCAACACAGGCACCACCCCCCCC----------AATC
CCCAGTCCCCAATTTATTAAGCATAATGTTTTTTA-TTTATCGCTTGGGCTCCAATCCCCAATTGAATCTCGGTAGAAAA
GATCGATAAATGGCCGGACGTGGCGCAACTTGCATGCGGTATGGAAATCATTAAAATCTGACATGAATTCCTACCATGGG
CCCACCTGCTTGCAAAATTTGGGGTCATTTGAAGGATGTCCAAAATATACCTCATTGAACGAGGAGTGTTCGGGTAGGCC
AGAAAGCTCCATCTGAGAGCATGTTGTTTCTTGACATCCTTAAAATGGCCTAATTTTATTTCATGGCCTTGTATGACCAA
TTCAAGGTACCACATCAAGTT
>chr7A_820
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-------------------CGCTGGTTCCATCCGATTCACTTGCATAATGCATTTGGTTGGTAAGAGCTACACACGTCAG
GACAGGGACTCCCCACCGAAAACATGTGCAAGCAGTTGGGTGCGTTTGTGATAAACAGAGCAACCACCGCGGGTGAACCT
GCAGGATAGCTCAAACTCTCACAGGAGCCTGATCCAGAGCATGGCCGCTGCTCGGTGCTCCTCTTTCCCTGCTCTCTGCG
TGGTGGTAGTAGTAGTAGTGGTACTCATCGGCGGTGGTGGCGCCGAGTCCGCCGCGGACCAAGAAGGCCTCAAAATCCAC
CTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAGGTAAGC
ATCCAA-----AGCTTCGTATGCATCTGCCGGCGCATATCAGATATCACATGTATATTCACGTGGAATAATATGGCGCAG
GAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCCAGCGTCGCGGCTCGTTG
GCAGGGCGCAGGGCTTGGCGCTCCATGCGTCGCTTGACGAGTCCGGCGGGCTCACGGCCATCACCTTCGCCTTCTCCGAC
TACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGTGGG
CGGCACGGGCAAGCTCCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAGCTCCACGGACACCTCCATCGTCGTCG
TCTTCGACATGTACTTCACCCTGGCCCGCTGACACGCACGCGCGGGGAACCAACGGAGTACAAGGTGTAC--TTTCGAAG
C-AAGCTGTTCGAGAGTTGCTGTCAT------------------------------------------------------
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>chr7B_998
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-------------------------------------AGCATGGCCGCTGCTCGGTGCTCCTCGTTCCCTGCTCTCTGC-
--GTGGTGGTAGTAGTAGTGGTACTCATCGGCGGCTGTGGCGCTGCGTCCGGCGCGGACGAAGAAGGGCTC---ATCCAC
CTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAAGTAATT
AAGCATCTAGTAGCTCTGTATGCATCGGCCGGCGTATAT-------CACAAATATATTCACGTGAATTGATTTGGCGCAG
GAACTCGTCCACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCCGGCGTCGCGGTTGGTCG
GCAGAGCGCAGGGCCTGGCGCTCCACGCGTCGCTGGACGAGTCCGGCGGGCTCACGGCCATCACCTTCGCCTTCTCCGAC
TACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGTCGG
CGGCACGGGCAAGCTCCGGTTCGCGAGAGGGTACATGGTCAGCAGCCTCCTCAGCTCCACGAACACCTCCATCGTCGTCG
TCTTTGACATGTACTTCACCCTGGGTCGCTGATTCGCACGCGCGCGGAGCGAGTGGAGTACAA-GGTGTACATTTCGAAG
CAAAGCTGTTGGGGAGTTGCTGTCATACAGTACATGTACCCAAGCAATCAATCCTGCAGGCCTGCTGATACGTTGCCAAT
AATCAATCTTTCTCTAATTAATACAGGTGGGTTTGTGCTGGATGCTGGAATCTTTTAAAAAATG-TTATTATTACTTAAA
AAATAATCCGAAACTATATGTCCAAATTCTTAAATTACAATTCCATGAACCTATCAGCTTCCCTTAGCCTGAAGAGTGAC
TCTTCGGCCTCGCTTGGCCTGAAGATATCCTTTTCAGACTTTGTTGGGCCGAAGACCCCTCTTCGGCC----------AA
GAAGAGTCACGCTTCTTCCTTGTGGTGAAGGCTGAAAAGTGTCCTATATTGCTCATCAACCGCACCTTATACACCACAAC
TCCTTCCAGTCAAACCTTCGCGGCACTAGGACCACATCGACTAGTAGAATCCATTCAGATGAAGAACAACTTGAACCGTG
CATTGCGGAGGACGAATTGTGCCTATCAATCTACACTGAGCACAACAAGCCTACATGGCCCTCGGTGAGAGATTTTTCAT
TTAATCACACACATGTACACATCTAGATGCTCCCAACATCCGAGACATTACCCTTCATCCTATTATAGTCACTGGCCGTG
CACACGACGACCTTTGCCATCGGCTGACGTGAACTGGATGTTGCCAACATCCGACCTAATATGACTCCACCCATATTACA
ACTCTTCGATTTACAAACAACCTCTATCTCAAAACTTCTCGG--AACTAGGGAAGCATCTTATAGATCGACGATCCACTT
GCAAACTCAAACACCAAACCCAACATCACACGCTTTGTTTGATCCAACACGGGCACGCGCACCCCCTCCGCCCCCAAAAC
CCCAGTCCCTAATTTATTAAGCATAATGTTTTTTACTTTATAGCTTGGGCTCCAATCCCTAATTGAATCTCGGTAGAAAA
GATCGAGAAATGGCCGGACGTGGCGCAACTTGCAAT-GGTATGGAAATCATTAAAATCTAACATGGATTCCTACCATGGG
CCCACCTGCTTGCAGAATTTGGGGTCATTTGAAGGATGTCCAAAATATACCTCACTGAACGAGGAGTGTTCGAGTAGGGC
AGAAAGCTCCATCTGGGAGCATGTTGTTTCTTGACATCCTTAAAATGGCCTAATTTTATGTCATGGCCTTGTATGATCAA
TTCAAGGTACCACATCAAGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--S---------------S----S----S--------------------S-----------
-----S----------S----------S--------------------S-----------------------------SS
--------------S-------------------------------------S-----S-----------S---------
-----------S-------------------------------------S--S---------------------------
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-----------------------------S--------------------------------------------------
--------------------------------------------------------------S---S-----------S-
--------------------------------------------------------------------SS----------
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---------------S-------------------------------------S---------------------S----
-------------S-----------------------------------------S------------------------
----------S---------------------S--S--------S------------S-------------S--S-----
----------S-----------S--S-------------------------S----------SSS---S-----------
---------------------S--------S---------------------S---------------------------
--------------------------S--------S----S---------S-----------------SSSSSSSSSS--
---------------------S--------------S---------S--------------S--------------S---
----------S-----------------------------S--------------S------------------------
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-------S---------------------------------SSS-----------S-S----S--S--------------
-----------------------S----------S-------S-------S-----SSS-S-----------------S-
---------S-------------------------------S-----------------S--------------------
------S---------------------------SSS----------------------S-----S--------------
--------------S---------------------------------------S-----------------S-----S-
---------------S-------------------------------------------S----------------S---
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>forward_458
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--------------------------------------CAAAGGCGGATGTTGCAACA----------------------
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>reverse_2091
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----------TAAACCTTCGCGGCACTAGG--------------------------------------------------
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