>input_sequence_73997
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-------------------------------------------------------------------------------C
GAA----AAAAACCATG---ATGAGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTCGCCCTCGTTTCCTCC
GAGGCTTCCACTCTAGACGATACATGCAGGTCCATCGGCGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTT
CTTCCAGGCCGACAACGCCAGTGCGACCGCGGACAGGCGCGGCCTTGTCGTCATCGCCACTAAGATCACCCGAGAAGAGG
CCGCGAACATCCGGAAGCGGATCGATGCCCTCAAGGCCTCGGGGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGC
CGCATGCACTACACGAACGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGAAGGCGAA
GATGAACCTCACAGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGTGTCGTGTCGCCGCTGG
CCGCCGAGGACGCCGAGTTCTCCAAGGGCTGCTCTATCGCTCTCGCCATAACGACCATGTTGTAGCTA-GCTAGCCGCCG
AGGATGTGTGAACCTGG-TAACAGCTCTGGCTT----CGAGTCCATGATCATTTGGATCGACCAATAAA-----------
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>chr2B_1_TraesCS2B01G474300
ATCTAGGTTTGCCAGAATGACGCCTTCGAGGTGTGAACTTGCGACTTGCCGGTCCCCAATGGCGCCGGAGCGGGAATTGT
AGCGAAAAGATGACATATTTTGGAAAGTCAAACTTTTTCTTCAA--ATTTTTGATTTTTCAAAAATCAAGATATTTATCC
AAATTTTGGATTTTATGGAAAAGGGGAACATTTTTTTGGAAAACATGATCATGTTTTGAGTTTTGAATTTCCCAAACTAT
TTTGAAACACGTTTTTTCTTAATTTGCAAACAAATTTTAAAACTTAGAACATTTTTCAAAATTCAAACCAATATTCAAGA
ACACGACA--TTTTTTGAAATATCAAATAATTTCTGAAAA----------GGGAAACATTTTGAGATAGAAAAAAAGAAG
CTGAAGAAAAATCAAAAAAAGCAGAAAAATAAAATAAAAACAATAGAAATCAGACGGGAACTTCCAGAAGGATCCCAAAA
CCGGGGAACCAGTGTACAGTTCAATGGCCCTGCCTGTTTCCGTTGCTCGCTCGGCATTCGGAATGCGAGAAATAGGAAAT
GCCGCAACGCCCTTCCCCTCCCAAATTTTCTTTTTGAGTTGGGCATCCCAATATTTTTGGCATAAACACCCCCAAGTTTT
ATTAGGAATAACTTGAGTCCAAAAAGGAATACAATTACTCCCTTCGATCCATATTAATTCTGATTGATTCAGTACAACTT
TATATTAAATGAGCAACAATTAACATGGATCGATGAA-------------------------------------------
-----------------------------------AGTAATGTTCCATATTAATTCTCGGTGATTTAATACAACTTTGGA
CTAAATCGGCGACAATTATTATGGATCGGGGGAGTAATTTATTAATAGCAAAACATAATATTTTTTGCAATACATACCTT
TTTCATTGGTTTGTTCAAATTAATTGGAAGAT-----TGATATACTCATGAGGTATTTTTGTATCA---ATCATGGCTAT
ATATATGCACCATCCGCATATGATTTGTTA------------TAAAA-------AACAAGACATATACGACAATCGTGCC
GAA----AAAAACCATG---ATGAGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTCGCCCTCGTTTCCTCC
GAGGCTTCCACTCTAGACGATACATGCAGGTCCATCGGCGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTT
CTTCCAGGCCGACAACGCCAGTGCGACCGCGGACAGGCGCGGCCTTGTCGTCATCGCCACTAAGATCACCCGAGAAGAGG
CCGCGAACATCCGGAAGCGGATCGATGCCCTCAAGGCCTCGGGGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGC
CGCATGCACTACACGAACGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGAAGGCGAA
GATGAACCTCACAGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGTGTCGTGTCGCCGCTGG
CCGCCGAGGACGCCGAGTTCTCCAAGGGCTGCTCTATCGCTCTCGCCATAACGACCATGTTGTAGCTA-GCTAGCCGCCG
AGGATGTGTGAACCTGG-TAACAGCTCTGGCTT----CGAGTCCATGATCATTTGGATCGACC-AATAAACTCTTGGAAC
CTGCAATTCCAGATCAGTGAACTTTGCAAGTATGTTTGGAGGAAAATCCTGTTTTCTTATAGAA-----TTGAATTATTA
TC------GAGCTTATAGAATTAATTTTGTGATTTCCTTTTTTTTCTAAAGCTTATAGAATGGAAATACTCCATCTGTCC
ATGTTTACATGCAGCCACACTTGTCTTATAGGGGTCCTAACTGGGTTTAGTGCCATGCCTCTTGCCGGTGCCTTCAAAGA
GGGAAGGTCATGGACGCGCGCTACCCTGATCAGATAGACAGACATAAGCCTTGCGAGCCCGAGTTTGGTTATGTGCACAT
GTCCCCGTTTGAGATCGTTTATTGTTTTGCCACGATGATGGCCATTGAGTGTGCGCACAG-TTTGCGTACGATTGTGGTG
ATGGAGGAAATAATGGATTTGGCCCATTAATGTTCGTC-TTATTTAGGAGATCTGATGCCATAAGAGTATCTACAACCAG
ACCCTCGGATCCGCCATAAACGCTCGAGCGGGCTGCCCG-T----------------------------------CACTG
ATCGGACGAAAAAAGTAGTATCCAACCGGGTT-CCACAGCCGGCCCAAACGTCTGGACTGCCC-----------------
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-------------GTGCACTGTTTTGACCAAAATGATCGACACACATGTTTTTACATGTATTTGATGTTTTAAAAATAGG
GTTTATGGTTGCAAATAGCAAAATTCTGGTCACTTTGTGTTTGTGTTTGTGTTTGCATGTGAGGCATGTCCGATCACTTT
CTGCGGGCATGTCCGCAGACGTATAGGGATCCGGATTAGGCAAATCTGGCCTTAGATGCTCTAAGGGAGAGAAATGCACA
GTAACTAATTTTATTCGCAAAAGATGCATGAAAAATAATTAAGTACATATCTCTATCTCTATCTTCTACTCCCTCCGTTC
CTAAATATTTGTCTTTTTAGAATTTCAAATAGACTACCATATACGGATGTATATAGATATATTTTAGAATGTAGATTCAC
TCATTTTACTCCGTATGTAGTCACTTATT
>chr2B_55
------------------------------------------------------CCCAATGGCGCCGGAGCGGGAATTGT
AGCGAAAAGATGACATATTTTGGAAAGTCAAACTTTTTCTTCAA--TTTTTTGATTTTTGAGAAATCAAGATATTTATCC
AAATTTTGGATTTTATGGAAAAGGAGAACATTTTTTTGGAAAACATTATCAT-------GTTTTGAATTTCCCAAACTAT
TTTGAAACACGTTTTTTCTTAATTTGCAAACAAATTTTAAAACTTACAACATTTTTCAAAATTCAAACCAATATTCGAGA
ACACGACA--TTTTTTGAAATATCAAATAATTTCTGAAAA----------GGGAAACATTTTGAGATA-AAAAAAAGAAG
CCGAAGAAAATCAGAAAAAA-CAGAAAAATAAAATAAAAATAATAGAAATCAGACGGGAACTTCGAGAAGGATCCCAAAA
CTGGGGAACCAGTGTATAGTTCAATGGCCCTGCCTGTTTCCGTTGCTCGCTCGGCATTCGGAATGCGAGAAATAGGAAAT
GCCACAACACCCTTCCCCTCC-----------------------------------------------------------
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--------------------------------------------------------------------------CAAAGA
GTGAAGGTTATGGACA--CGCTACCTTGATCAGGTAGGCGGACATAAGCCTTGTGTACCCGAGTTTGGTTACGTGCACAT
GTTTCCGTTTGGGACCGTTTATTATTTTGCCACGATGATAGCCATTGAGTGTGCGCACAG-TTTGCATACGATTGTGCTG
ATGGAAGGAATAATGGATTTGGCCCATTAATGTTCGTC-TAATCTTGGAGATTTGATGCCATAAAAGTATCTACAATCAG
ACCCTCGGATCCGCCGTAAACGCTCGAGCGGGCTGCCCG-T----------------------------------CACTG
ACGAAA--AAAATACTAGTATCCAACCGGGTTCCCACAGCCGGCCCAAACGTTTGGACTGCCC-----------------
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-------------GTGCACTGTT-TGACCAAAATGATTGACACACATGTTTTTGCATGTATTTG----------------
----ATGTTTGCAAATAGCAAAATTCTGGCCACTTTGTGTTTGTGTTTGTGTTTGCATGTGAGGCATGTCCGATCACTTT
CTGCGGGCATGTCCGCAGACGTATAGGGATCCGGATTAGGCAATTCTGGCCTTAGATGCTCTAAGGGAGAGAAATGCACA
GTAACTAATTTTATTTGCAAAAGATGCATGAAAAATAATTAAGTACATATCTCTGTCTCTATCTTCT-------------
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>chr2A_55
------------------------------------------------------CCCAATGGCGCCGGAGCGGGAATTGT
AGCGAAAAGATTACATATTTTGGAAAGTCAAATTTTCTCTTCAAAATTTTTGGATTTTTTAAAAATCAGGATATTCATCC
AAAATTTGGATTTTATGGAAAAGGAGAACATTTTTTTGGAAAACATGATCAT-------GTTTTGAATTTCCCAAACTAT
TATGAAACAC--TTTTTTTGAATTTGCAAACAAATTTTAAAACTTAGAACACTTTTCAAAATTCAAACCAATATTCGAGA
ACATGAACATTTTTTTGAAATATCAAATAATTTCTGAAAAATTCTGAAAAGGGAAACAT---------------------
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--------------------------------AATTACTCCCTCCAATCCATATTAATTCTTAGTGATA-AGTACAACTT
TATACTAAATGAGCAACAATTAACATGGATTGGAGACAATAATGATCCATGTTAATTCTGAGTGATTCAGTACAACTCTA
TACTAAATGAGCAACAACTAACATGGATCGGAGAGAGTAATGTTCCATATTAATTCTCGGTGATTTAATACAACTTTGGA
CTAAATCGGCGATAATTAATATGGATCGGGGGAGTAATTTATTAATAGCAGAACATAATATA-TTTGCAATACATACCTT
TTTCATTGGTTTGTTCAAATT----GGAAGAT-----TGATATACTCATGGGGTATTTTTGTATCA---ATCATGGCTAT
ATATATGCACCATCTACAAACGATTTGTTA------------TA-----------------------------------G
TCGTGCCAAAAACCATG---ATGAGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTGCTCCTCTTCGTCCTCGTCTCCTCC
GAGGCTTCCACTCTAGAGGACACATGCAAGTCCGTCGGCGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTT
CTTCCAGGGCGACAGCGCCAGCGCCACCGCGGACAGGCACGGCCTCGTCGTCATCGCCACTAAGATCACCCGAGGAGAGG
CCGCGAACACCCGCAAGCGCATCGATGCCCTCAAGGCCTCGGTGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGC
CGGATGCACTACACGGCGGCGCTGAAATGGCTCGAAGCCGCCGCGGAGGGCGTCAAGTCGGGTAATTTGCAGGACGCGAA
GACGAACCTCACGGCCGTGATATTGGGCACGGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGCGTCGTGTCGCCGCTGG
CCGCCGAGGACGCTGAGTTCTCCAAGGGCTGCTCCATCGCGCTCGCCATAACCACCATGTTGTAGCTAACG---------
--------------TGG-TAACTGCTCTAGCTG----CGAGTCCATGATCATTTGGATCGACCAAATAAACTCTTGGAAC
CTGCAATTTCAAATCAGTGAACTTTGCAAATATGTTTGGACGGAAATTTTGTTTCCTTATAGAATTGCCTTGAATTATTA
TTTTTCTGGAGCTTATAGAATTAATTTTATGATTTCTTATTTTTCTGG-AGCTTACAGAATAGAAATACTCCATCTGTCC
ATATTTACATGCATG-----------------------------------------------------------------
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----------------------------------------------------GCGCACGGTTTTATGTACGATGGCGCTG
ATGGAGGA---AATGGATGTGCCCCATTAATGTTCATCCTTATTTAGGAGATCTGATGCCACAAGATTATGTATAACCAG
ACTCCCATATCGTTCCTAAATGCTCGAGCAGGTTGCCCGGTCATTGACCGGACGAAAAAAATAGTATCAAACCAGCATTG
ACCGGACGAAAAAAATAGTATCAAACCAGGTTTCCAC---CAGCCCAAACGCCGGGCCCGCACCAATTTTTTTATTCTTT
TTTGGGTGGTGGAGGGGGGGGGGGTATGGGGACGTCCGGATGT----GCAACATCAGAATGATCGCTAGGGCCCGCGCGC
CCATATTCACTCCCA----CCTTGCCGGACCAGCCCTCTTCTCTTCTTTGTTTGTCCTCGTCCATACAGCCGTAATCGGT
CAAGGTCACCACTACCGGACGCCGCCCCATGGTCATTACTTCTAGATCATCGATGAATTCGTCATGGAATGATGGCTATG
AGTGGAAAAATGATTTAACTTAAAAACTTTCTAAATGTGAACGGCCATCAACGCTCACTTTTGTGAAGTTGTGAAGAGTA
TGAACTATGACTCGGCTGTTCATACCCCTCACAAAGGGGGCATTGATGGTCATACTGAGAGAGAAGATTACTGCTTTTGC
ATGATGCGGCTATCTAAGCCGGCCGCATCGCTCCTCGTGCAGCGAGGTGACACTAAACCCCCAACCCCGCCGGACCTGAA
ATTTTCTATTTGTGTGCACTGTT-TGACCAAAATGATCGACGTGCATGTGTTTTCATGTATTTGATGTTTCAAAAATACG
GTTTATGATTGCAAATGGCAAAATTCCGGTTTCTTTGTGTTTGTGTTTG------CA--TGAGGCATGTCCGGTCACTTT
ATGCGGGCGTATCGGCAGACGTATAGGGATCTGGATTAGGCAATTCGGGCCTTAGATGCTCTAAGGGAGAGAAATGCAGG
GTAACTAATTTTATTCGCAAAAGATGCATGCAAAATAATTAAGTACATATCTCTATCTCTATCTTCT-------------
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>chr3B_823
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----------------------------------TAATTTATGAATAGCAAAACATAATATC-TATTCAATGCTTACCTT
TTTCAATGGGTTTGTTGAATT----GAGTGCCCAAGATAACATACTCATCAAGTATTTCTATATTTACGATCACTACTAT
ATATATGAACCATCTACAGACGACATGTTA------------TCAAACACCATAAACAACACATATACTCATCAAGGTAG
TCGTGGCACAAACCATGACCATGAGGCACCGGCAAGCTCTCTCATGTCTTGC---CCTCCTCTTCATCCTCGTCTCGTCC
AGCGCTTCCATTTTAGATGACACATGCAAGTCGGTCGCCGCAAGAAACAAGGACATCTCCTACAACTACTGCATCTTGTT
CTTCCAGGCCAACAACACCAGCACCACCGCGGACAAGTGCGGCCTCGTCGTCATAGCCACAAAGATCACCCGAGCAGAGG
CCGCAAGCACCCGCAACCGCATCGATGCCCTAATGGCCTCAGGGACGGACAAGAAGGTCAACGGGTGCCTCTCCGAGTGT
CGCGTGCACTACACGATCGCGCTGAACTGGCTCGAAGCCGCGGCGAAGGGCATCGAGTCAGGTAATTTGCAGGATGCGGA
GGTGACCCTCAGAGGAGTGATATTGGGCATCGATACCTGCGAGGAAGGGTTCCGCAAGCTAGGCATCAAGTCGCTTCTGG
CCGCCGAGGATGCCACGTTCACTGCGGGCTGCTCCATCGCTCTCACTATAACGAGCATGTTGTAACT-AGCTAGCCGTCG
TGGATGCACGAATCTGGCTAATAGTTCTAGCTATACACTAGTCCAGGATCATCCGGACCGATC-AATAAACCCTTCAAAC
CTGCAATTTTAGATCAGTGAACTTTGCAAGTATGTTTGGATGG-AATTTTGTTTTCTTATAGAA-----TTATATTATTA
T-------------------------------------------------------------------------------
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>chr2D_864
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---------------------------------------------------------------------------ACCTT
TTTCATGGGTTTGTTCAGATT----GGAAGAT-----TGATATACTCATAAGGTATTATCGCATTTACGATCACGGCTAT
ATATATGCACCAGATTTTTGTTATCAAACAACACATATATGGTA-----------------------------------G
TCGTGCCAAAAACCATG---ATGCGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTGGTCCTCGTCTCCTCC
GACGCTTCCACTCTAGACGACACATGCAAGTCCGTCGCGGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTT
CTTCCAGGGCGACAGCGCCAGCGCCACCGCGGACAGGCGCGGCCTCGTCGTCATCGCCACGAAGATGACCCGAGCAGAGG
CCGCGAACATCCGCAAGCGCATCGATGCCCTCAAGGCCTCGGTGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGC
CGCATGCACTACACGGCGGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGGACGCGAA
GACGAACCTCACGGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGCGTCGTGTCGCCGCTGG
CCGCCGAGGACGCCGAGTTCTCCAAGGGCTGCTCCATCGCTCTCGCCATAACGACCATGTTGTAGCTAAGCTAGCCGCCG
AGGATGTGTGAATCTGGCTAATAGCTATGAGTCCA---------ATGATCATTTGGATCCACC-AATAAACTCTTGGAAC
CTGCAATTTCAGATC--------TTGCAAGTATGTTTGGACGGAATTTTTGTTTTCTTATAGAA-----TTGAATTACTA
TTTCTCTGGAGCTTATAGAATTAATTTTGTGATTTCCTTTTTTTGTAA-AGCCTATTGAATGGAAATACTCCATCTGTCC
ATATTTACATGCATG-----------------------------------------------------------------
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----------------------------------------------------GCGCACTG-TCTGCGTACGATCGCGCTA
ATGGAGGA---AATGGATGTGGCCCGTTAATGTTCATCCTTCTTTAGGAGATCTGATGCCATAAGAGTATCTACAACCAG
ACCCCCGTATCGGCCCCAAATGCTCGAGCAGGCTGCGCGGT----------------------------------CACTA
ACCAGAGGAGAAAAATAGTATCCAACCGAGTTTCCACAACCGGCCCAAACGCCTGACCCGCATCAAATCT----------
----------------GGGGCGAATATGGGGACGCCCGGCCGTGCCTGCAACATCGGACTGACCGCTAGGCCCGTGCCAA
TTCGCGCATATCCGCCCCTCCTTGCCAGACCAGCCCTCTTCTCTTCTTTGTTTGTCCTCGTTTGTACAGTCGCAAACGGT
CAAGGTCAGCACCATCGGACGCCGCCCCGTGGTCATTACTTCTAGATCATCGATGAATTCACCGTGGAATGATGGCTATG
AGTGGGAAAATGATTTAACTTAAAAAGTTTCTTAGTGCGAAGGGCAATCAATGTTGGCTC---------TGTGAAGAATA
TGAACTGTGACTCGGCTGTTCATACCCTTCACG-----------------------------------------------
---------------------------TCGCTCCTCGTGTGGCGAGGTGAGACTAAACCCCCAACCCCGCCGGACCTGAA
ATTTTGTATTTGTGTGCACTGTT-TGACCAAAATGATCGACGTGCATGTCTTTGCATGTATTTGATGTTTTAAAAATAGG
GTTTATTGTGGCAAATAGCAAAATTCCGGTCACTTTGTGTTTGTGTTTG------CATGTGAGGCATGTCCGGTCACGTT
CCGCGAGCGTGTCCACAGACATATAGGGATCCGGATTAGGCAATTCTGGCCTTAGATGCTCTAAGGGAGAGAAATGCACG
GTAACTAATTTTATTCGCAAAAGATGCATGCAAAATAATTAAGTACAT--CTCTATCTCTATCTTCT-------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
----------------------------------------------S------------S--------------------
------------------------S---------------------------SSSSSSS---------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------S-----------
-S--------SSSS------S-------------------S-----------------------S---------------
-S--------------S---------------------------------------------------------------
---S----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-S---------------S-S----SS----------
----S-------------------------S-SS--S-------------------------------------------
--------------------------------------------------------------------------------
------------S-----S------------------------------------------SS-----------------
---------------------SSSS-------------------------------------------------------
--------------SS-------------------------------------------S--------SSSSSSS-SSSS
SSS---------------------------------------------------------------S------S------
--------------------S-------S----S----------------------------------------------
---------------------S--S--------------------S----------------------------S-----
-------------S-----S------------------------------------------------------------
----------------S-------------------------------------------------------S-S-----
---------------------------------------------------------------S----------------
----------------------------------S---------------------------------------------
------------S-------------------S-----------------------------------------------
--------S-------------------------------S-S----SS-------------------------------
-S------------------------------------------SSS-S-------------------------------
--S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-S------S------SSS-------S-------S---S-S-------------S-SS--------------S--------
--SS-------S--S--------S---------------S-------------------------------------S--
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---------------S----------------------------------------------------------------
-S------------S-----------------------------------------------------------------
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-----------------------S-----------------------------S--------------------------
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-------------------------------------------S------------------------------------
-------------------------------------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_44
------------------------TTCGAGGTGTGAACTTGCGA------------------------------------
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>reverse_1963
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------------------------------------------GGGTTTAGTGCCATGCCTCT------------------
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