>input_sequence_73996
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---------------------------------------------------------------------------ATGAG
TAGAGCAGGGAGCAGCGGGGGTGGCCGGAGCTCTCTAGGCTACCTCTTTGAGCCGGATGAGATCTTCCCGATCCACAAGT
TCAAATCCAACCAAGAGACCGAGAAGCTCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGGTCATGACCGGT
GATGAAGCAGACCACCAAGAACCGCCGTATAAGGCTCCTCCGAAGAGAGAGGAC---TCGAACCCGATTGTGTCTCACAG
ACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACTGTAAGTTCTTTAGATTTCG
GTTACTTTTATTTACTGTAAGTAGCACGTACTGCTTCACAAGTTCAGAATTCAGATCGTTGGTTTCTGTACATATAGATG
CATAGTCCAT-GCAGATCACTTCAGTCAGATGCTCCATGGCATATATAGCAACTCACATAGCATGCATGCATGCATGAGC
TTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGAACCGACCGTCGACGAGGGTCCGGTGTGCACCGGGAGGGG
CGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGA------------------------
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>chr2B_1_TraesCS2B01G414600
GTAAAAATTACATTCAGATCAGATCCGTAAACCACCTAGCGACGACTACAAGCACTCAAGCGAGCTGAAGGCATGCCGTT
GTCATCTCCCCTTCCTCACCGGAGCCGAGCAAACCTTGTTGTAGTAAACAGTCGAAAAGTCGTCGTGCTAATGCCCCATA
AAACCAACGCACCAGAACAGCAACCGCTGCCGATAAAGAGTGTAGATAAGAATGATCCAATCTAAAGACAAACGAACAAA
GACGACTACGAACATATCCGAACAAATCCACTAAAGATAGATCCACCGAAGACACACCTCCACACGCCCACCGACGATGC
TAAACACATCTGAACGGGGGTTAGACAAGGGGACCTTTATTCCATCTTTAGACAGCCGCCGCTGTCTGTCTTCCTGAGTA
GAACACAAACCCTAACAAATCTCGAAAAAAGAGCTAAAAACGGAGCTCACATGCAAGAACTGGGATCCACTCCGCCCAGG
ACGCACTTACCGACCGATCGGGCACGTGATTCATACGAACTCTTGGGAATCAAAGGAAGGAGTAGTGCAGTAGTGCACGA
TGATACTTCTCTGGTTGAGCAAAGTGCTTGCTTTTCTGTGGTTGAAATGACTTTCCCCACAAACACCAAACCATGGAAAC
GTGTTCGTTGTTCAGCTGAGTTTTTTGAAATTTAAAATGCCTCTTCTGTAGAGCAAATATTTTACGAGTTGGACTTGGAC
GACGTCTGTTTAACGTGTGATCAGTGTTGAACGGT-CAAGATGGAAGCCAAAAAAGGCTGTGTCGCTGCGGTGTGTGGTC
ATGCCTGAAGGTGGCCTCGTGCCTCCCTCTCACATACACTCCCGTGTC--------TTCATGTGACTGCTTACTGATCGA
TATGCCCGGTTGATTCCGATGTCTGAGGTGTGCACCTCACCTCAGCGTGTCCCATACTCACACCAGCTCTATAAGTAGCG
ACTCCATCGTCACGCTAGAGAGAGA--------------------------AAGCTCAGCACATTTGAGCAGAAAATGAG
TAGAGCAGGGAGCAGCGGGGGTGGCCGGAGCTCTCTAGGCTACCTCTTTGAGCCGGATGAGATCTTCCCGATCCACAAGT
TCAAATCCAACCAAGAGACCGAGAAGCTCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGGTCATGACCGGT
GATGAAGCAGACCACCAAGAACCGCCGTATAAGGCTCCTCCGAAGAGAGAGGAC---TCGAACCCGATTGTGTCTCACAG
ACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACTGTAAGTTCTTTAGATTTCG
GTTACTTTTATTTACTGTAAGTAGCACGTACTGCTTCACAAGTTCAGAATTCAGATCGTTGGTTTCTGTACATATAGATG
CATAGTCCAT-GCAGATCACTTCAGTCAGATGCTCCATGGCATATATAGCAACTCACATAGCATGCATGCATGCATGAGC
TTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGAACCGACCGTCGACGAGGGTCCGGTGTGCACCGGGAGGGG
CGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGGGCCCGTGCGCGCATCAACAAA
GAGTTTATGACTTGATCTATTTATGCAAAATTGCCTCAAAAAAGTTCTACTTATGCAAAAGGAGGGTGTTCTAATTTATG
TAGCACGAGTGTGGCATATGCCCTGCATGGCCTACATATCTACGTGCGTGTACCGTGTTG-------CTTGGCCGCGTGA
GTGTCACAACACATAGAGCGCTTGCCGGGATCTCTGCGGTATAGTA--------------TAAGGTATATGGGGTTTAAG
TGATGATTGGGTGTTCAATTCAAATGGTTTTGTTACTCTTGTG-GTTAATGTGTAATTCCAAGAGTGAATATAGATTGTT
GTAACTTATTTTATTTATCCACGGGCTATATTATGATACGATGGAGTCATGC--------GGCATTGTATTGTGCAGGGT
AAACATATTCACATCTAGCACATACTAGTTCATTT-CGATGAAATCCAGACAACATGATAGTTCG----------TTAAG
ATCGTACGTTCACCATGTCCTAGACATGAAAT--------TTTAACTTCATTGAGTAGTGAAATGAATATGTGTTTGATG
ATAATGATGACTATATGTGTGAATCTCAAAACACAAACTCATTATAGATCTAAGGATTACCGTGTATATGTTTTTCCGGA
ATTT----TTTTGATCTATTCAAACATCATGACGACACAAAGAACACGAGAAGTAACAGAAATTATATCCATGTCCGTAG
ACCACCTAGTAATACTAGAAGCACTGGAGCGAGTTGAAGGAGCGCCGCCGTCATCGCCCCTCCCCCACCAGAGCCGGGCA
AATCTATATTAGACAGTCGGGAAGTCGTCAGGCT-AAGCCCCAAAGGACCAGCGCACCAGAACATCAACCGTCACCGATG
AAGAGAAACGTAGATCAGAAGGATTCAACCTGTAGACATATGAACG-AGACGAACAAAGACCAGATCCATGAACATACAC
TAAAGACAAATGCCGACCGAATCCCATGAGATCCGCCGGAGACACACCTCCACACGCCCTTCGGTGACGCG
>chr2A_716
TGGCGG--------------------------------------------------------------------------
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--CGTCTGTTTAACGTATGATGATCACTGTTGGACGCAAGATTGAACCCGAAAAAGGCAGTGTTGCTGCGGTGTGTGGCC
ATGTCTGAAGGTGGCCTCGTGCCTCCCACTCTCTCACGTATGTATCCTTGGTTCAATTCATGTGACTGCTTACTGATCGA
TATGCCCGGTTGATTCCGATGTC-GAGGTGTGCACCCAT----AGCGTGACCCATACTCACACCAGCTCTATAAGTAGCA
ACTCAA----CACGCTAGACAGAGAGAGAGAGAGAGAGAACACAGCAACACAAGCTTAGCACACTTCGGCAGAAGATGAG
TAGATCAGGGAGCAGCGGGGGCGGCCGGAGCTCTCTGGGCTACCTCTTTGAGCCGGATGAGATCTTCCCGATCCACAGGT
TCAAATCCAATCAAGAGACCGAGAAGCCCTCGGAAGAGGGCATCGTCATGCAGCCGCAGGACGACAAGGTCATGACCGGT
GATGAAGCAGACCACCAAGAACTGCCGTACCAGGCTCCTCCCAAGAGAGAGGAGGACTGGAACCCGATTGTTTCTCGCAG
ACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTGATCACTGTAAGTTCTTTAAATTTCT
GTACTTTGTAATCACTGTATAA-----GTACTGCTTTAGAAG-------TTCAGATCGTTGGTTTCTGTACATA-AGATG
CATCGTCCAT-GCAGATCACTTCAGTCAGATGCTCCATGACAT--------ACTCACATAGCCTGCATGCATGAGCCTGT
AA-TAATCAACATGTGCGTCTTCGCTATTTCGCCTTGTAGGACCGACCGTCGACGAGGGTCCGGTGTGCACCGGGAGGGG
CGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGGCACACACCCAGTCCAC---AA
GAGTTCATGACTCGGTCGATCTATTTATGTTTTTCACCTGCGG--------TATGCGAAAGAAAAGTATTCTAATTTATG
TAGCACGAGCTTGTCT------TTGCATGACCTATATATCTACGTACCTGTACCGTGTTG-------CTTGGTCGGTGTG
AACCATGGACGCTTAATATCTTTGTT------------GTAATTGCTGCTATGCAGAGCTTAAGTTATATGGGGTTTAAG
TTATGATTGGGTGTTCAATTCAAATGGTTTTCTTACTCTTATGAGTTACTGTGTAATTCCAAGAGTGAATATAGACTGTT
GTAATTTATTTTGTTTATCCACGGGATGTATTATGAGGTA--------ATGGAGTCATGAGGCATTCCATTATCCATGTT
AAACAGATTCACATCTAGCTTATACTAGTTCGTTTTCCATGAAATTCAGAAGAAAAAAGATAGTTGGTTAAGAACTTAAG
ATTGCACATTCACGAAGCCCTAGATGTGGAAACACTGTACTTCGACTTCATTGAGTAGTGAAATGAAGATC-GTTGGATG
ATAAGGATGATTATATGTGTGAATCTCAAACCACAAACTCATTATGGATCTAAGGATCAC--------------------
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>chr2D_909
CACA----------------------------------------------------------------------------
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-----------------------------------------TCAGCGTGACCCATACTCACACCAGCTCTATAAGTAGCA
ACTT----GTCCCGCTAGAGAG-----------------------------------AGCACACTGCAGCGGAAGATGAG
TAGAGCAGGGAGCAGCGGGGGCGGCCGGAGCTCTCTGGGCTACCTCTTTGAGCCGGATGAGATCTTCCCGATCCGCAGGT
TCAAGTCCAACCAAGAGACCGAGAAGCCCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGGTCATGACCGGT
GATGAAGCAGACCACCAAGAACCGCCGTATCAGGCTCCTCCCAAGAGAGAGGAGGTATCGAACCCGATTGTGTCTCACAG
ACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACCGTAAGTTCTTTAGATTTCG
GTTACTTTTATTTACTGTAAGTAGTACGTACTGCTTCACAAG-------TTCAGATCGTTGGTTTCTGTCCATATAGATG
CATCGTCCATTGCAGACCACTTCAGTCAGATGATCCGTGGCATATATAGCAACTCACATAGCATGCATGCATGCATGTGC
TTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGGACCGACCGTCGACGAGGGTCCGGTGTGCACCGGGAGGGG
CGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGAGCCGGTGCGCGCATCAACAAA
GAGTTTATGACTTGATCTATTTATGCAAAATTGCCTCAAAAAAGTTCTATTTATGCAAAAGGAGGGTGTTCTAATTTATG
TAGCACGAGTGTGGCATATGCCTTGCATGGCCTACATATCTACGTGCATGTACCGTGTTGGGTGTTGCTTGGCCGCGTGA
GTGTCACAT-ACATAGAGCGCTTGCGGGGACCTCTGTGGTAATTACTGCTATCCAGAGCTTAAGGTATATGGGGTTTAAG
TGATGATTGGGTGTTCAATTCAAATGGTTTTGTTACTCTTGTG-GTTAATGTGTAATTCCAAGAGTGAATATAGATTGTT
GTAACTTGTTTTATTTATCCACGGGCTATGTTATGATAAGATGGAGACATGGAGTCATGAGGCATCGTATTGTGCATGGT
AAACATATTCACATCTAGCATATACTAGTCCATTT-CCATGAAGTCCAGACAACATAATAGTTGG----------TTAAG
ATCGTACGTTCACCATGTCCTAGACATGAA--------ACTTTGACTTCATTGAGTAGTGAAATGAAGATGTGTTCAATG
ATGAGGATGAGTATATGTGTGAATCTCAAAACACAAACTCATTATAGATCTAAGGATTACCGTATATATATTTTTTTCCG
GGAAAAACTTTCGATCTATTCAAACATCATGGCGGCACAAAGAACATGAGAAGTAACAGAAATTACATCCATGTCCGTAC
ACCACCTAGCAATACTACAAGCACTAGAGCGGGCTGAAGGAGCGTCGACGTCATCGCCCCTCCCCCACCGGAGCCGGGCA
AATCTGTAGTAGACAGTCGGGAAGTCGTCGAGCTAAAGCCCCAAAGGACTAGTGCACCAGAACAACAACCGTCGCCGATG
AAGAGAAACGTAGATCAGAAGGATTCAACCTGTAGACATATGAACGCAGATGAACGAAGACCGAATCCATGCAGATGCAC
CGAAGACAAATGCCGACCGAATCC-----------------------------------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------------S----S-SSSS--SSS-SS-------S---S--S--------S----S--------------S-
---S-----------------------S---S-SS--SSSSSSS-SSS--------------------------------
-----------------------S------------SSSSS--------S-----------------------------S
----S-SS------------------------------------------------S------S--S-------S-----
---------------------S--------------S----------------------------------------S--
---------------------------S----------------------------------------------------
------------------------------S----------S-----------S--------------------------
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------------------------S-----------------SSSSSSS-------------------------------
---S-------------------------------------------------------------------------S--
----------------------------------------S---------------------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------------S------------------------------
----------------------S------------------------S--------------------------------
-------------------------S----S-----S----SSSSS----------------------------------
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--------------------------------------S-------S----S------------------------S---
--------------------S----------------S------------------S------S----------------
-------------------------------S-----------S-----------------------S-------S----
----S-----S----------------------------------------------------S-----S-----SSSSS
SSSS-------S-------------------S--S-----------S------------------S-------------S
---------S-------S-------S-----S-S----------S--S---------------------S----------
-----S--S--------------------SS------------------S--S-----------S--------S------
--------------------------------------------------S----S------SS-------S-S--S---
SS----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_458
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--------------------------------------AACGGAGCTCACATGCAAGA----------------------
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>reverse_2052
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---------------------------------------------------CGGCATTGTATTGTGCAGGG---------
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