>input_sequence_73992
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----------------GTCCATTCTC----CTCCGTTAGCTTTGCTAGCTAG-CTAACACAGCCCCC-------------
GTAGCAGCAGCCA----GTAGCTCACTGGTGTCCACCTCTAGGCC------TCTCGGGTGAACCAGAGCAGATCCATGGC
GCCCTCTCGTCGCATGGCCGCATCCGCCCTCCTGCTGCTGGTCCTCCTCGTCGCCACAGGTACGTTCCCC-CGCACAG--
------CCTCACTCTTCCCAGCGAGCTTC---------ATTCCCTCGACGATGCTT-AGTTGCTT----------ACCGT
GGTCTCGTTGGTGTGCATGCAGAGATCGGGGCGACGAGGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCA
CAAGTTCAAGGGCGCGTGTCTCAGCAGCAGCAACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCC
ACACGCACAACTTCGCGCGCAAGTGCTTCTGCAAGAGGGCCTGCTAGCCCGCCTGCTCGAC--------CCGGCC----G
GCC----ACCGCCGCCTCGTCCCATGGTAGCTACCCAGCCACTAGATCGTCCGTGCCGTCTGCTAGATCTGTTCGTCAGT
GCGTTCCGGTTCGTCAGTAGTAGCTGTTCGTGTGT---CTGTGTGCCGTAATAAAGTAGGAAATCAACC-----------
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----------------------------
>chr1B_1_TraesCS1B01G067300
TTTCATTTACACTACGTATAAATTATAGTGGAATGCGACGGATGCACTATTATATTATTCTTTGCATATTTCAGAAAGTG
CAAATTCAGTGCAAGTTTTAAAGGTTTTTCTTTTTCATTGCACATATAGTCACTAATGATTGCATACAACACATTGTGTT
CCCGTTCGGATAATGGCTGTGACGGCTGGTTTTTCTTTGATTAATTAAATGCTAATGGCCGGTGCTTAATGAACTAAATG
TTGCTCATGAGATTATGCATGCATCGCATGGAAGTGAACCCACGTGAGCAGCACTATAGATCATGCAATCAACCCATACA
TCGCTGTGTCCCTCTATTCCCACTTGAAGCAAATCGACTGAAACAAACTTGGGTCAGTCGACTGACCCAAATTTCATTTT
CAGTTGATTGATCTCTAGCCGGTCCCGAATCAT-----------------------------------------------
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-------------------------------ATCATACGCGGATTCACGCGC---CCCATGTATCTGCCTCTGACCTGTG
CTGTGTACGTACGTATGAATCTGCTTCTCATCGGAAGGAGTGACTAGGCGTACAGTAGGCTCGGTTTGCGTACAGCCTTG
ATGGCCGCTCCACAGCCACCCACCAGTTTGGATGGTATCCAGCTCTCTAAGCTGTAGGCCGTCGGCTTGCCTGACGAGCA
GCATGTGACCTCGATGACCCCC-GCTCGCTAGTGTCCAACGACGGGCCATTCATCGGTAA--GGAAATCCGGCCCGTGAA
ATGACCACTCCCTCAGTCCTACT-------ACGCTCCTTTCGGAATCGAATGAAGTTATTGGACCT-GGGGGCTGGCAAC
GTGGATTGGGCAGTAGTTGCCTGCCCTGCTCCATACTGCATGCATGTGCAGTATGGGTGAGCAGCAGTTGCCTGCTCTGC
TCCGGTGTGCAGTACAG------GGTGAGCAGTGATTAAATCCAGAAGGACACTATG-TT--TGT-TAAT-CCCACGACT
TAAACACCC--AC--TAATCCGCCGTCTGCCTATATAAACCCCAGCA---------GCCCAGCT----------------
----TCTCACATCGGTGTCCATTCTC----CTCCGTTAGCTTTGCTAGCTAG-CTAACACAGCCCCC-------------
GTAGCAGCAGCCA----GTAGCTCACTGGTGTCCACCTCTAGGCC------TCTCGGGTGAACCAGAGCAGATCCATGGC
GCCCTCTCGTCGCATGGCCGCATCCGCCCTCCTGCTGCTGGTCCTCCTCGTCGCCACAGGTACGTTCCCC-CGCACAG--
------CCTCACTCTTCCCAGCGAGCTTC---------ATTCCCTCGACGATGCTT-AGTTGCTT----------ACCGT
GGTCTCGTTGGTGTGCATGCAGAGATCGGGGCGACGAGGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCA
CAAGTTCAAGGGCGCGTGTCTCAGCAGCAGCAACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCC
ACACGCACAACTTCGCGCGCAAGTGCTTCTGCAAGAGGGCCTGCTAGCCCGCCTGCTCGAC--------CCGGCC----G
GCC----ACCGCCGCCTCGTCCCATGGTAGCTACCCAGCCACTAGATCGTCCGTGCCGTCTGCTAGATCTGTTCGTCAGT
GCGTTCCGGTTCGTCAGTAGTAGCTGTTCGTGTGT---CTGTGTGCCGTAATAAAGTAGGAAATCAACCGGGGTCTCGGT
AGTTTGGTTCGCCGCAC--------GTCGCGTTTGTGTCTGCTTTGTGTGGTAAT-----------GTAA-----TCGTT
GTTTCAGCACGGACGGACGTGTGCAATGCATTC-----------------------------------------------
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----------------------------------------CCCTCTGTCTCTGTCAGTGTGATCGGTTGTTTTGTGTGTT
ATTAAATCAGCATCTACAAAGAGAACTGCTGTTATTGTGACTAGTGCATTTTTATCTGACGAGATGTTTTTCGAAGCTGC
GTGAACATTTCATTT-GAACACATGACCAACTAAAAAAGGCAAGTTGTTTGCCAAAGAAAATAAACTAAGAACTCATGGA
CTATGAGTACAAACTTTCTTTTATCACGAAAAGAATGTCTTATGTGTATTCAGATTTTATTGAACCTGCTCTACAAATCG
TATTTTCTACTTTCAAAGC--ATATAAAGCTGGGACATTAAAAAATAACACATGCGTAGACAACCATTTCCCTGGAAGAA
CAATCTGGACTGCACAAGCCTCCAAGAGTCCAACCGTATGGAAACATTTGGGCAAAGCGCCCTCGATGCTCCTTCAAATG
GGC---------------------------TCCCAGAGGGCAACATAGGATGAACACACGTCCATCCAATC--ACACTCT
GATCGTGTATAACGGAAGATGTTTAGAG----AGGTACTCCCTTCGTCCGAAAATACTTGTCATCAAAATGAATAAAAAA
GATGTATCTAAAACTAAAATACATCTAGATACATCCCCTTTTATCCGAAAATACTTGTAGAAATAAACCGCCTTTTCTTA
CGCATCGTTGCTTTTTTTTTCTGGCATAGCTGCCCAAGCAAGTGATAATGCTATGCAAGTAAGCAAACGATACTTCAAAC
AAGACCCGTTCGTTT-TACAAGCACCTCCCTAAGTACGTTGCATTGTACATGACCTAACAGAGATCGCGAGGGCAGGCAG
AGCCATTTGACAAAAGAACAAACCCTCTATGCCCTCATAAGTTCCACGTGCTTCGTG-----------TGTTGTATGCAC
CTACTTCCATGTTCTTTCTTTTTTTCTT
>chr1D_428
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---------------------------AATCAT-----------------------------------------------
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-------------------------------ACCATACGCGGATTCACGCGC---CCCATGTATCTGCCTCTGACCTGTG
CTGTGTACGTACGTATGAATCTGCTTCTCATCGCAAGGAGTGACTAGGCG--------------------TACAGCCTTG
ATGGCCTTTCCACAGCCACCCACCAGCTTGGATGGTATCCAGCTCTCTAAGCTGTAGGCCGTCGGCTTGCCTGACGAGCA
GCATGTGACCTCGATGATCCCCGGCTCGCTAGAGTCCAACGACGGGCCATTCATCGGTAAAAGGAAATCTGGCCCGTGAA
ATGACCACTCCCTCAGTCCTACTC-------CGCTACTTTCGGAATCGAATGAAGTTATTGGACCT-GGGGG-TGGCAAC
GTGGATTGGCCCCGC----CCTGCCCTGCTCCTGCTCCTGTGCATGTGCAGTATAGGTGAGCAGCAATTGCATGCTCTGC
TCATGTGGGCAGTACTG--TCTAGGTTAGCAGCAATTAAATCCAAAAGAACACTACG-TTTGTGT-TAAG-CCAACGGCT
TAAACACCC--ACAGTAATCTGCCGTCTGGCTATATA----CCACCA---------GCCCAGCCCGCTCTTCGCTTCTCA
-------CTCACCGGTGTTCATTCTC----CTCCACTCGCTTTCCTATCTAACCTAACACAGGCCCCCGT---------T
GCAGCAGCAGAGC-------------------AGATCGATCCAGTACGTCTCGGGTGAACCAGCTGAGCAGATCGATGGC
GCCCACTCGTCGCATGGCCGCATCCGCCCTCCTGCTGCTGCTCCTCCTCGTCGCCACAGGTACGTTCCCC-CGCACAG--
------CTTCACTCTTCCCAGCGAGCCAGCTCTGGTCTGCTCCATGGACGATGCTTAAGTTGCTT----------ACCGT
GGTTCCGTTGACGTGCATGCAGAGATGGGGACGACGAGGACCAAGACGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCA
CAAGTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGGCGTCTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCC
ACACGCACAACTTCGCCCGCAAGTGCTTCTGCAAGAGGGCCTGCTAGCCGGCCTGCTCGCC--------CCGGCCGCCCT
GCCGGCCAGCGCCGAGACGTCCGATCTGT-----------------TCGTCAGTGCTGTCTGCTAGATCTGTTCTTCAGT
GCGTTCGCGTTCGTCGGCAGTAGCTGTTCGTGTGACGACTGTGTCCCGTAATAAAGTAGGAAATCAACCGGGCTCTTGGT
AGTTTGGTTCGCCGTCTGCTAGTAGGTCGTGTTTGTTGCTGCTTTGTGTGGTGAACTTGTGATGTAGTAATAAGGTCGTT
GTTTCAGCATGGACGTACGTGTGCACTGCATCC-----------------------------------------------
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----------------------------------------CCCTCTGTCTCTGTTGGTGTGATCGGTGTCAAAAACGCTC
TTATGACTTATATTATAAGACGGAGGGG---------------GTACATTTTGATGTGACCCGACG-TTTTCGAAGCTGC
GTGAACATTTCATTTTGTGCACATGAACTAC-------------------------------------------------
---------------------------G-AAAGAATATCTTATGTGTATTCAGATTTTATTAAACCTACTCTACAAATCG
TATTTTCTACTTTAGAATAATATATAAAGTTTGGACACTAAAAAAGAACACATGTGTAGACAAACATTTCCTTGGAAGGA
CAATCTGGACAGCACATGCCTCCAGAGTT-CAACCGCATGGAAACATTTGGGTAAAGCGCCCTCGATGCTCCTCCAAGTG
ATAAGGATGCATCGGTGACTCATCGTGGGGTCTCAGAGGGCAACAGAGGATGAACACACGTCCATCCAATCGCACACTAA
GACCGTGTGCAATGCAAGATGTTTACAC----AGGTACTTGTAAAAC---------------------------------
--------------------------------------------------------------ATAAACCGCCTTTTCTTA
CGAATCGGTGCTTTTTTTA--CGGCATAGCTGCCCAACCAAGTGATAATGCTATGCAAGTAAGC-AACGATGCTTCAAAA
AAGACCCCTTCGTTTATACAAGCACCTCCCTAAGTACATTGCATTGTACATGACCTAATATAGATCGTGAGGGCAGGGAG
AGCGATCTGACAACAGAGCAAACCCTCTGTGCCCTCGTAAGTTCCACGTAAGTTCCACGTGCTTCATATGATGTATGCAC
CTACTTCCATGTTCTTCCTTTTTTT---
>chr1A_429
CACTAATCTACCGTCTGCCTATATAAACCCCACTCTTTGCTCTCACTCGTGTCCATTCTCTCCACTCCATTCGCTTTGCT
ACTAGCTAACACAGCCACCCGTACATAGCACTAGCAGCAGCAGCAGGGCAGCTCCTCAGTCCAGTACGTGAGCAAGATCA
GCAGATCGATGGCGCTCTCTCGTCGCAAGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACGGGTACATGC
CGCCTCCCATCCTCACTCTTAATTCCCAGCGAGATGTGATCTGTTTCCTGGATGACCCTTAGTTGCTTAATGTGGTTTGG
TTGATGTGCATGCAGAGATGGGGACGACGACGACCAAGCTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCACAAGTTC
AAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCCGAGGGCGATTGCCACACGCC
GCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGGCCGCACGCTGGCCCCGCCCTGCCGGCCAGCGCCGAGACG
TCCGATGCTACATCATCCGTGCCGTTAGCTAATAATTAGCTTATATCTGTTCTGTTGGTCGGTGCGTCCAGGTTCGTCAG
TCAGTCGTACTAGTTCTTAACTAGATCATCCGTGCCGTAACTAGTTCTGTTCTGTTCATCGGTGCGTCCCTCTTAATCAG
TAGGACAACTAATAAAGTAGAAAAATCAATCGGGGTCTCTGTAGTTTACTTCGCTGTACGCCGTGTTTATGCCTGATTTG
TGTGTGGTGATGTAATAAATATGTTCGTTGTTTCAGCATGGATGGACTTGTGCAATGCATCCCCCTTTCCCCCCTGTCTC
TGTGTAAGTGTGATCGTGTTCAAAGGCAAATGCTAGTATTATTGCTTGTGACTACTGCATTTTCATGTGACAAGACGTTT
TTGGAAGCTGCATAAAGATTTCATTTGTATACATGAACAACTATAAGTTGAACGTAACCTTGTCAAAAATTTAACGCTAG
ATTGTAGGCCTTTTCTCTATTAAAAAATACCTTGTCAAAAGAAACCAAGTTTTCTTTTGAGAAAGAAAATAACATAGTAG
AGCATTAACATGAGTACAACTTTTCTTTTACTAAAAGAAACAGCTTTATGTGCACTGGGATTTAATTAAACCAGCTGGTC
TACAAATCACATTTTTCTACCTTTAATAAAAAAATATTACACATGAAAATCAGAAGAAGAAAAAAGATGCATAGACCACC
ATTTCCTTGGAAGAACAATTCCGCAAAAGCCCTCCAGAGTCTAACCGTACAGAGATATTTTGGTAAAGCGCTCTGGATAC
TCCTCCTAGTAATAAGGATGTGCCGTTGACTTAGCGTGGGGTAGGAGGATGGATATAAATCCATCCAATCACACACTATA
AGCAGAGACAATGTAAGATTGTAAGATGTTTCAAGAGTTGCTTGAAAAAAATTCTTAAACAACGATACTTTTTTTAGGTG
ACTAAGTAAGCATTTATGCTACACAAATAAATACTGGTGCTTTATAAAAAACAGGTTCATTTTTACAAGCACCTATATAA
ATACTTTGTGTTGCACATGGGCTAGCACACACCACAAGGCAGGCATCATGATCTGCTCACAATTGGGACAAACCTTATGG
GCCCTCATGAGTTACATGTGTCCCATATGCCGAAGTTTTTTTCAGTGGTATACTTTTATATTTTATTTTTTAGACAAAAT
TTTATATTCTTTTAAGTTATTGTAGTCATGTGACCCACAATTTTTATTTAGCGCTCATTTTAGAACGACAGGGAGATCAT
CCTATTTTTGTGCCTTGTGCTACAAATAGAGCCTATAACACAATATTGACCGTCCCAATAACTCCCGTACCCTCCTCACT
CGCGAAACTATCACAAAAACTATATCTCACTTACGGTGAGTTATTGCAAGTGCTCTCTCAGAGAGCTCTTGATTTGGGTC
AGCCCGCCTAGGAACCGAGGGTGGGGACGGTATTTGCTTAAAGCCTTTTCGCGCGGGTTCTTTTCATGTGGTTTTATTTG
GGAATCGGCTTCTCATCCATTTTAGTGTTTTTCTTGAGGTCTTGCCTTTTTTCTCCTTTTTAGAACTTTTTTCCTGTTTA
TTTGTTATTTATTTTCTGTTCCTTTTTTCTCTTTCCTTTCCTTTCTCTCTTTATTCCCGGTTCTAATTTTTTTGTTCATC
ATCTATTAAAAACAAGTACATCGTCTATTTAAGAAAAAAAATGCATATCTGAACATGCTATCGTGTATTTAAAACAATTC
CAATGTGTATTAAAAATGGTAACCATGTATGTATTAAAATGTATAGAGTGTACTTTAAAAATGTTCCAGTATATTAAAAT
ATGTTCATCGTGTAGCCCATCTTGCTTCAAAAATGAATGCTCATATTTAAAAAAACATCAATGAATATTTTAAAAGGGTT
CGGTGTATTATTTAAAAAATCACCATGTACTAAAAATCCTAGGTCAGATTTGTAGCTAAGTCCAAGATCATTTGGTTACT
TATGATAACCGTAGCTGACGGGCTGGATCATATCATACGCGGATTCACGCACCCTCCCATGCATCTGCTTCTGACATGTG
C---------ACGTATGAATCTGCTTCTCATCGCATGGAGTGACTAGGCGTACAGTAGGCTCGGTTTGCGTACAGCCTTG
ATGGCCGCTCCACAGCCACGCATCGGGTGAAGCT-----------------------------------------GAGCA
GCATGTGACCTCGACGATCCCCGGCTCGCTAGAATCCAACGACGGGCCATTCATCGGTAA--GGAAATCGAGCCCGTGAA
ATGACCACTCCCTCAGTCCTACTTACTACTACGCTACTTTCGGAATCGAATGAAGTTATTGGACGTGGGGGG-TGGCAAC
GTGGAATGGCCCCGC----CCTGCCCTGCTACTGTGCATATGCATGTGCAGTGTGGGTGAGCAGCAATTGCATGCTCTGC
TCCTGTAGGCTGTACTGGATCTAGGTTAGCAGCAATTATATCCAAAAGGACACTACGCTT--TGT-TAAG-CCCACGGCT
TAAACACCC--AT--TAATCTGCCGTCTGCCTATATAAACCCCACCA---------GCCCAGCCCACTCTTCGCTTCTCA
GTTCTCACTCACCGCTGTCCATTCTT----CTCCATTCGCTTTGCTA---------ACACAGTCCCCAGT---------A
GCAGCAGCAGCAGGA----------------CAGCTCA------------GTCTCGGGTGAAGCTGAGCAGATCGATGGC
GCTCTCTCGTCGCATGGCTGCGTCCGCCCTCCTGCTGCTGGTCCTCCTCGTCGCCACAGGTACG-------CCCCGCC--
------TCTCACTCATCCCACCCAGCGAGCTGTGGTTTGCTCTTTTA---------------CTT----------ATCGT
GGTTTCGTTGATGTGCATGCAGAGATGGGGGCGACGACGGTCAAGCTGGCTGAGGCGCGGGACTGCCTGTCCCAGAGCCA
CAAGTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCCGACGGGGAGTGCC
ACACGCACAACTTCGCCCGCAAGTGCTTCTGCAAGAGGGCCTGCTAGCCCGCCTGCTCGATCGCCCCGGCCGCCC----T
GCCGGCCAGCGCCGCCACGTCCGATGCTAGCTAGCTGT----TAGATCGTCCGTGCCTTTTGGTAGATCTGTTCGTCAGT
CCGTTCCCGTTCGTCACTAGTAGCTGTTCGTGTGG---CTGTCTCCCGTAATAAAGTACGAAATCAACCGGGGTCTCGGT
AGTTTGGTTCGCAGCAC--------GTCGTGTTTGTCGCTGCTTTGTGTGGTAAT-----------GTAATATGGTCCTT
GTTTCAGTATGGACGGACGTGTGCACTGCATCTAAATCTGAGGATGGTTTCATACTTAAACCATACTTGAACCATGCCTA
CATGTATCTCTCAAAACCATACTTAAACCATGCCCGTTTAGTGTCATTTTCAACCCAACCAAAATTAGATCCTCTATTTT
TTTCACCCAAACAAATTTAAATTAATACATAACCATGGGTTTAAACCCAATACATAACTATGGATTTGCTTCAATGTATA
TATGATTGCACAAATCGACATGTTAAGAAGCAAATGACATAAAAAAGGCATAAGTGCATCTGCAACAGTTTGGGAACAAA
GTTATCGTTGAGATACAGTCAACACACAGTAAGAGTTAAAAAGACAATGCCCACGATTGAACAAGTGTATTAAAACCAAT
TGCTTAGTTAAAGCACAAGCAAACACATTCGATTTGCATGTGGTATTTCCCCATAATACAGAATTACATAGTGCATCGCA
GCATGTACGCGGATCAAAGATACTCGTTGTCGATGCGTCCTTACTTATTGCACATAACCAATGCCCAGAAACCGGTTTGG
ATCCATAGTTTATAGCCATTAATAACCAAATTGTTTAAGCCCATAACCAACTATACCCAAATTGGTTTCTTCACATACCT
AAACCAAAACCAAACTAAAAAAGATTCAACCCAATAAAATCTGAACCAATCAAACCCAAAGTAAGAACCGAACTGTTTCA
TCCAGTTTTTTAATAACCATTCTCAGGTTTAACTGCATCTCCCTCTGTCTCTAC--------------------------
--TAAATCAGCATCTTCAAAGAGAACTGCTATTATTGTGACTACCGCATTTTTATCTGACGAAATGTGCTTGGATGCTGG
GTGAACATTTCATTT-GTACACATGAACAACTAAAAAAGCTAAGTTGTTT------------------------------
------GTACGAACTTTCTTTTATCAGG-AAAAAATACCTTGTATCTATTCAGATTTTATTAAACTTGCTCTACAAATCG
TATTTTCTACTTTCAAATAATATA--AAGTTTGGACATTAAAAAATAACACATGCGTAGACAACCATTTCCTTGGAAGGA
CAATCGGGACTGCACAAGCCTCCACTGTT-CAACCGTATGGAAACATTTGGGTAAAGCGTCCTCGATGCTCCTCCAAGTG
ATAAGGATACATCGGTGACTCATCGTGGGGTCCCAGAGGGCAACAGAGAATGAACGCACGTCCATCCAATCACACACTAA
GAACGTGTACAATGCAAGCTGTTTATATATAGAGGTACTTGTAAAAC---------------------------------
--------------------------------------------------------------ATAAACCGTCTTTTCTTA
TGCATCGGTGCTTTTTTTA--TGGCATAGCTGCCCAAGCAAGTGATAATGCTATGCAAGTAATC-AGCGATGCTTCAAAA
AAGACCCATTCGTTTTTACAAGCACCTCCCTAGGTACGTTGCATTGTACATGACCTAACAGAGATCGCGAGGGCAGGCAG
AGCGATCTGACAAAAGAACAAACCCTCTGTGCCCTCATAAGTTCCACGTGCTTCGTA-----------TGTTGTATGCAC
CTACTTCCATGTTCTTCCTTTTTTT---
>chr1B_885
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----------------G------GGTGAGCA---ATTAAATTCAGAAGAACACTACG-TCTGTTAA---G-CCCACAAAT
TAAACACCC--AC--TAATCTGCCATCTGCCTATATAAACCCCACAGCCAGCTATGGGCCAGCACACTCTGCT-------
------TCTCACTGATGCCCATTCTC----CTCCATTCGCTTTGCTAGCCAG-CTAACACAGTCCCCCATAGGCCCGTAC
GTAGCAGCTGCAGGA----------------TAGCTAGGTCCAGTACGTCGTCTCGGGTGAGCTAGAGCAGATCGATGGC
ACTCTCTCGTCGCATGGCCGCGTCCGCCCTCCTCCTGCTGGTCCTCCTCGTCGCCACAGGTACG-------CCCCGCCGT
CCAGCCTCTCACTCTTCCCACCGAGCGAGCTGTGGTTTGCTCCATGGATGAC---------GTTTTACTTGCT-----GT
GGTTTCTTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCTT
CAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCACACCGAGAACTTCCCCGACGGCGAGTGCC
ACAGGCAGCACTTGGAGCTCAAGTGCTTCTGCAAGAGGCCCTGCTAGTCCGCCCCCTCGCC--------CAGCCC----T
GCCGGCCAGCGCCG------------------------------------------------------------------
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>chr1A_886
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-----------------------GGTGAGCA---ATTAAATTCAGATGGAGACTACG-TTTGTTAATAAG-CCCACAACT
TGAACACCC--AC--TAATCTGCCGTCCGCCTATATAAACCCCACCA---------GGCGAGCACACTGTGCT-------
------TCTCACTGGTGCCCATTCGT--------------TTTGCTAGCTAG-ACAACACACAGTTC----C------AC
GTAGCAGCAGTAGGA----------------TAGCTCGGTCCAGTACGTCGTCTCGGGTGAGCCAGAGCAGACCGATGGC
GCTCTCTCGTCGCAGGGCCCCTTCCGCCCTCCTCCTGCTGGTCCTCCTTGTGGCCACAGATACGTCGCGC-TGCCGAG--
------CTCTACTGTA-----------------GGTTTGTTCCCTCGATGATGATGCTC-TGCTG----------ACCGT
GGTTTGGTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCGTGTCGCAGAGCCA
CAACTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCC--CGGCGAGTGCC
ACACGCCGCACTTCGAGCGCAAGTGCTTCTGCGAGAGGCTCTGCTAGTCCGCCCGCTCGCC--------CCGTCC----T
GCC-----------------------------------------------------------------------------
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>chr1A_916
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-----------------------------------------------------TACG-TT--TGT-TAAG-CCCACGACT
TAAACACCGACA----AATCTGCCGTCCGCCTATATAAACCCCACAGCCA---------CAGGCCACACTGCT-------
------TCTCACTGGTGCCCATTCTC----CTCCATTCGCTTTGCTAGCTAG-CTAACAGAGTCCCCCGT---------C
GCAGCAGCAACATCAGGATAGCTTTGCTAGCTAGCTCGGTCCAGTACGTCGTCTCGGGTGAGCCAGAGCAGATCGATGGC
GCTCTCTCGTCGCATGGCCGCGTCCGCCCTCCTCCTGCTGGTCCTCCTCGTCGCCACAGGTACG-------CCCGGCCTC
CCAGCCTCTCACTCTTCCCACCAACCGAGCTGTGGTTTGCTCCGTGGATGATGCTT-AGTTGCTTACTCCCTCCTACCGT
GGTTTGGTTGATGTGCATGCAGAGATGGGGACGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCTT
CAAGTTCAAGGGTGCGTGTCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAAGTTCCCTGACGGCGAGTGCC
ACAGGCAGCACTTGGAGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGTTCGCCCGCGCGCCGGCC---------------
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>chr1B_920
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----------------------------------------------------------TT--TGT-TAACCCCCACGACT
TAAACACCCACAC--TTATCTGTCGTCTGCCTATATAAACCCCACT-------------------------CT-------
------TCTCACTCGTGTCCAGTCTCTCCACTCCATTCGCTTTGCTA-CTAG-CTAACACAGCCCCCCGAAC------GC
GTAGCAGCAGCAGGAGGGTAGCTC----------CTCAGTCCAGTACGTCTCAGGTGAGCAAGATCAGCAGATCGGTGGC
GCTCTCTCGTCGCATGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACAGGTACGTCGCTCACGCCGAA--
------CCTCACTCTTCTAAGCGAGCCG--TGTGATCTATTTCCTGGATGAC---------GCTT----------ACCAT
GGTCTCGTTGATGTGCATGCAGAGATGGGGGCGACGATGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCA
CAACTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCACACGGAGAACTTCCCAGACGGCGAGTGCC
ACACGCCGCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGACCGCCTGCTGGCC--------CCGCCC----T
GCCGGCCAGCGCCG------------------------------------------------------------------
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>chr1B_920
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----------------------------------------------------------TT--TGT-TAACCCCCACGACT
TAAACACCCACAC--TTATCTGTCGTCTGCCTATATAAACCCCACT-------------------------CT-------
------TCTCACTCGTGTCCAGTCTCTCCACTCCATTCGCTTCGCTA-CTAG-CTAACACAGCCCCCCGAAC------GC
GTAGCAGCAGCAGCAGGGTAGCTC----------CTCAGTCCAGTACGTCTTAGGTGAGCAAGATCAGCAGATCGGTGGC
GCTCTCTCGTCGCATGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACAGGTACGTCGCTCACGCCGAA--
------CCTCACTCTTCTAAGCGAGCCG--TGTGATCTATTTCCTGGATGAC---------GCTT----------ACCAT
GGTCTCGTTGATGTGCATACAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGCAGAGCCA
CAACTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCACCGCCGTCTGCCATACGGAGAACTTCCCAGACAGCGAGTGCC
ACACGCCGCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGACCGCCTGCTGGCC--------CCGCCC----T
GCCGGCCAGCGCCG------------------------------------------------------------------
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----------------------------
>SNPs
SSSS-S-SSSS-SS-SSSSS-SS--S-SSSS-S-SSSSSSSS-SSSSSS-SSSSS-SS---SSS-SSSS---SSSSS-SS
SSS-SSS-SSS--SSSSSSSSSSSS-SSSSS-SSSSSSS---SSSSSSSSSSSSSSSSS-SSSS---SSS-SSSS-SSSS
S-S-S---SSSSSSSS--S-SSSS--SS-SSSSSS-SS-SSSSSS-SSSSSSSSSSSS--SSSS-SSS-S-SSSSS-SSS
SSS---SSSSSS-S-SS-S-SSS--S--SS--SS--SSSS-SSS-SSSSS-SSSSSSSSSSSS---SSSSSSSSSS-SSS
-S-S----SSSSSSS-SSSSSSSSS--S-SSS-S-S-SSSSSSSS-SSSSS--SSSSS-SSS-SS-SS-SSSSSS-S--S
S--SSSSSSSSS---SSSSSSSS-SSS-----------------------------------------------------
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---------------------------------S----------------------------------------------
--------------------------S-----------------------------------------------------
-----------------S--------------S------------------------------------S----------
-----------------------------------S------------------------------------S-------
---------S-SSSSSSSS-------------SSSSSSS---------------------------S----S--------
---S---S-------S----------------SS---------------------S-------------S----------
--------------------S-----------------------S------------------S----------------
--------S--S----------------------S--S------------------------------------------
-----------SS-----------SSSSSSS-SS-S-SS-SSSSS-----------------------------S-----
--------------------------------------------------------------------------------
--------------------------SSS---------------------------------------------------
----------S---------------S-----------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------------------------------------------S
--------S-------S-----S---S------S-SSSSSSS--------------------------------------
-------S--------------------------S---------S-----------------------------------
-----------------------------S------SS------------------------------------------
---------S---------------S-----S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SS-----------SSSSSSSSSSS-S
S--------------S--------------S-------------------------------------------------
-----------------S--------S------------SS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S---------------S-S-------S------------------------S------------------
-----------------SS----------S-S---------------------------------------S------S-
------------------------SSSS-S----------------------S--------------------S---S--
SSS------------------------------------------S--------------------------------SS
--S------S--S-S----------S-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
-------S----------SSS-------------------------------------------S------S-------S
-------S------------------------------------------------------------------------
---S--S---------------------S---------------------------S-----------------------
----------------S--------SSS
>forward_235
--------------------------------------------------------------------------------
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-------------------------------------------------------TGGCCGGTGCTTAATGAACT-----
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>reverse_3310
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-----------------------------TGTCCACCTCTAGGCCTCTC-------------------------------
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>forward_280
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------GCATCGCATGGAAGTGAACC----------------------------------------
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>reverse_3796
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-----------------------------------CAGCCACTAGATCGTCCGTG-------------------------
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>forward_341
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGCTGTGTCCCTCTATTCCC-----------------------------------------------------------
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>reverse_4032
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-------------------------------TCCCCTCTGTCTCTGTCAGT-----------------------------
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----------------------------
