>input_sequence_73976
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----GCGCGCCCCGCCACCAGAAACCACTAACCGCCGGCCGCGCGCTATGGAGAGCACCGTCGACGCAATGGCGGCCGCC
TACGACGCGCTGGTCGACGCCGCGGCCGCCGCCGTCCGCGAGCCCGGTCGCACGGTGGCGCTCACGGACCTCCACCGCTG
CCTCGACGCCTTCAGCGAGTCCTGCGACCGAGCCGAGGGCCTCGTCCAGGCTGCCGCCGCCGGCCTCGGCCCCGCCGCCT
CCCGCCACGACGCGCTGTGTCGCGCCGTGCGCGCGGTCGACAAGGATCTCCGGGCCGCCGCCGCCGCCGGCGGCCAGGAG
GAGAACGAGATGGAGCAGGAAAAGAATCGCCCTCCGACCACGCCGCTGGCGGCCGAGGACAAATAGCCCAATCGATCTAT
CCCGTCTCCTGTTGATGCGATGTTCATCGGTCGTTCTTGTTTTTTCCATGTGATGTTCATCGTTCTTCTTGGTTTCTTGG
TTGATGTTCCCGCTAATCTTGTTAGTCATCTACGGGGTAGAACATTAATTCGTCGCCTCTGCTTGCAAAATAATCATGAG
AAAACAATCGAGGGGCTCATGTATTTTGTGGTTCGTCCTTCAAATACAATGC----------------------------
------------------------ATGCATGCAT----------------------------------------------
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>chr6D_1_TraesCS6D01G120000
GGGTCAATTCACACATGATATAGCTAATATGCTGTATGGCGAATTAATTTAGCTCTGTTTCGGTGGCCAACTACCGATGT
GTTATTAGTGGCTAGAACAAGGCACATACTATTTTTT-------------------------------------------
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---------------TCCCTTTTGATTGGGTGATATACCCCACAACTGTAAAGAAATGAAGTTGCAATGTCGTACGGCAA
ACTAATTTAGCTCGGTTTCGGTGGCTAACTGCTGACATCTTATTAGTGGCTAGAACAAGGCACGTACTGTTTTTTTTCTT
CTTTCGATTGGATGATATACCCCATAGCTGTAAATAATGAAGCTGTAGTGTAATGATATATCATCTTTTTTCTGCACCTT
TTGCCTTGCGGTCTTCAGTACTTGTGGT-------------TAGCTGATGTTTATTTTCTGATTCTACTAACTCT-TGTT
AGCAGGGTTATCTGACATGGTTTGCAATGTTAGTGTTGGTCTGAAGCTTTTCTAGAAGCATTTGTGTGTTCTCAAGCTCA
GGAGTTACAAGGAGCAATGGTGCTATGAAGGTCTTGAACTTCCACTAATCTTCTACTGAAGAATGATCCTTAGCTTAGTT
ACTTAGTTTGATTTCTTTTTTCGAGGATAGGTTTGGAGTTGCATCCACTTTTGTCTAGGTTGGTACTTCG----------
--------------------------------------TCTAATGCATGGCTGAATGCAAACAACTGATTTATTTTTCTT
ATAATATATGAACCATGTACTGCATCAATACTCAATGTAGATCGTGCTTGCAATTGTCTGAGCACAAAAACAGTTGACAT
ATTATGTATCACCAATAGCATATTCATGTGCTAACCAAAATGAGAAGAAAAAAATTGATGAAACGGTCAGCCTCTTACCT
GGCACCGCACAGCCACCTCTCAAGAGGCGCCCCAACTTCTCTCTCTCAAACAAAAAAAAGAGGCGCCCCAACCACTAGTG
TACTCGCGACAGAGTGCAGATGCAAAGAGGACTCAACACAAGCCACTCGATCTCGATCGACGCCAGTAA----CCGCCAG
CCTCGCGCGCCCCGCCACCAGAAACCACTAACCGCCGGCCGCGCGCTATGGAGAGCACCGTCGACGCAATGGCGGCCGCC
TACGACGCGCTGGTCGACGCCGCGGCCGCCGCCGTCCGCGAGCCCGGTCGCACGGTGGCGCTCACGGACCTCCACCGCTG
CCTCGACGCCTTCAGCGAGTCCTGCGACCGAGCCGAGGGCCTCGTCCAGGCTGCCGCCGCCGGCCTCGGCCCCGCCGCCT
CCCGCCACGACGCGCTGTGTCGCGCCGTGCGCGCGGTCGACAAGGATCTCCGGGCCGCCGCCGCCGCCGGCGGCCAGGAG
GAGAACGAGATGGAGCAGGAAAAGAATCGCCCTCCGACCACGCCGCTGGCGGCCGAGGACAAATAGCCCAATCGATCTAT
CCCGTCTCCTGTTGATGCGATGTTCATCGGTCGTTCTTGTTTTTTCCATGTGATGTTCATCGTTCTTCTTGGTTTCTTGG
TTGATGTTCCCGCTAATCTTGTTAGTCATCTACGGGGTAGAACATTAATTCGTCGCCTCTGCTTGCAAAATAATCATGAG
AAAACAATCGAGGGGCTCATGTATTTTGTGGTTCGTCCTTCAAATACAATGC----------------------------
------------------------ATGCATGCATGCTGTAGAATTTTGTTCAAATTCATGGACTGAAACTGTACGTGCTG
TCATCCTGTGAGATCATGCATTGTATGCCGTCC----ACGAGATTAGTGTGAGGCGAGATCTGATTTGACAGTGGGAAGC
AACGCATGCAGGGAAATCCAAAGCTGGAGGACCAGCCTCTTGTGTGGTGCCAGCGTAGCGGCGATTCGTCTTGGTTTGGT
GGCCACGGCTAGCTGACCAGACGTACTCAATCTCTCTCGGCAGGCATCAGCTGGGTGTTTCTTTCCCAGGCGGCCACGCG
ACCGCTACATGGATAAGGCGAAAACAGCGACAGTAGCACCAACACCACCAACATCAAGTTCAAGCTGCAGATACCTCTCG
CTGGCCTTTCGCTGTTGCATTGCTTTCCTGGTGCCGCGTAGCCACAAAGCAATTTATACTGCTAGTGCTCATACCGGACC
AAATTTCTCCTTTTCAGGTAAGGAAAACCAC--AGAGATTCGTATAAAGGATCGAGTTTGTGGTGCTTTTCTG--TTTCG
ACAACAGAGTTTTCAGCGTGTCACTCAC--TGTAGCATCAGAACAACGCATTTGAAAGAAGTTTCAGCGGTGGAGGTGAG
ATATATAAACGCTTAGGTTTTCAGTGATCTTTTTCTTTCTT-----TGAGAATGAGTTTTCGGCGTGTTATTATAGTATT
AATATTATAGCACAATATTTGGTCACAGTTTCCCGGATGCACACCGCCGCACATCTTGCAGACTTTATTCTGATGTTTGT
CATTACAATCTGCACGTGCTTCATCTATGATGATAGGCTCCAATTTTCCCAATGCAACTGTTTAACATTCTTCTGAACAT
TCATTGTTTCCATGTCTCGTCCTCTCTAACTGGGACGTTTACTTGATAATTTGATATGGTCGATGAACATCTATAACCTT
GTGTTGACGTCTTGCTGGCCGCTAGAAAGGCCGAGAATGCATTATCTGAAGTCCCTGACAATCCTATATCTTGCCCGAAA
CAATTCTAC
>chr5D_1
GGGTGAATCCACACATGATATAGCTAATATCCTGTATGGAGAATTAATTTAGGTCTGTTTTGGTGGCCAACTACTGATAT
GTTTTTAGGGGCTAGAACAAGGCACATACTATTTTTT-------------------------------------------
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---------------TTCCTTTCGATTGGGTGATATACCCCACAGCTGTAAAGAAATGAAGTTGCAGTGTCGTACGGCAA
ATTAATTTAGCTTTGTTTCGGTGGCCAACTGCTGACATCTTATTAGTGGCTAGAACAAGGCACGTACTGTTTTTTT--TT
CTTTCGATTGGATGATATACCCCATAGCTGTAAATAATGAAGTTGCAGTGTAATGATATATCATCTTATTTCTGCATGTT
TTGCCTTGCGGTCTTCAGTACTTGTGGT-------------TAGCTGATGTTTATTTTCTGATTCTACTGACTCTATGTT
AGCA-----GTCTGACATGGTTTGCAATGTTAGTGCTGGTCTGAAGCTTTTCTAGAAGCATTTGTGTGTTCTCAAGCTCA
GGAGTTACAAGGAGCAATGGTGCTATG---GTCTTGAACTTGCACTGATCTTCTACTGAAGAATGATCCTTAGCTTAGTT
ACTTAGCTTGATGTCTTTT--CGAGGATAGGTTTGGAGTTGCATCCACTTTTGTCTAGGTTGGTACTTCGACCAGAATTC
GCATGACATTATATGCCAAGATCAGTTGTT-TACTTCCTCTAATGCATGGCTGAATGCAAACGACTGGTTTATTTTTCTT
ATAATATGTGAACCATGTACTGCATCAACACTCAATGTAGATCGTGCTTGCAATTGGCTGAGCACAAGAACAATTGACCT
GTTGTGTATCACCAATAGCATATTCATGTGCTAACCACAATGAGA--AAAATAAATGATGAAACAGTC-GCCTCCTACCT
GGCACCGCACAACCACCTCTCA----------------------------------------------------------
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>chr4A_1
GGGTCAATTCACACATGATATAGCTAATATGCTGTATGGCAAATTAATTTAGCCCTCTTTTGGTGGCCAACTACTGTTAT
GTCGTTAGTGGCTAGAACAAGGCACATACTATTTTTCC------------------------------------------
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-----------------CCTTTCGATTGGGTGATATACCCCACAACTGTAAAGAAATGAACTTGTAGTGTTGTATGATGA
ATTAATTTAGCTCTTTTTCGGTGGCCAACTGCTAACATCTTATTAGTAGCTAGAACAAGGCACATACTGTTTTTTT--TT
CTTTCGATTGGGTGATATACCCCATAGCTGTAAATAATGAAGTTGTGGTGTAATGATATATCATCTTATTGCTGCATCTT
TTGCCTTGCGGTCGTGAGTACTTGTGGT-------------GAGCTAATGTTTATTTTCTGATTCTACTGATTCT-TGTT
AACAGGGTTGTCTGACATGCTTTGCAATGTTAGTGCTTGTCTGAAGCTTTTCGAGAAGCATTTGTGTGTTCTCATGCTCA
GGAGTTACAAGGAGCAATGGTGCTATG---GTCTTGAACTTCCACTGATCTTCTACCGAAGAATGATCCTTAGCTTAGTT
ACTTAGTTTGATGTCTTTTTTCGAGGATAGGTTTGGAGTTGCATCCGCTTTTGTCTAGGTTGGTACTTCGACCAGAATTC
ACATGACACTATATGCCAAGATTAGTTCTTGTACTTCCTCTAATGCATGACTGAATGGAAACGATTGATTTATTTTTCTT
ATAATATGTGAACCATGTACTGCATCAACACTCAATGTAGATCGTGCTTTCAATTGGCTGAGCACAAGAACAGTTGACAT
ATTGTGTATCACCAATAGCATATTCATGTGCTAACCAAAACAAGATTTTTT---TTGGTGAAACGGTC-GCCTCCTACCT
GGCACAGCACAACCATCTCTTAGGAGGTGCCCCAA---------------------------------------------
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>chr7A_1
GGGTCAATTCACACATGATATAGCTAATATGTTGTATGGCAAATTAATTTAGCCCTGTTTTGGTGGCCAACTACTGATAT
GTTGTTAGTGGCTAGAACAAGGCACATACTATTTTCCC------------------------------------------
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-----------------CCTTTCGATTGGGTGATATACCCCACAACTGTAAAGAAATGAAGTTGTAGTGTTGTATGATGA
ATTAATTTAGCTCTTTTTCAGTGGCCAACTGCTAACATCTTATTAGTAGCTAGAACAAGGCACATACTGTTTTT-T--TT
CTTTCGATTGGGTGATATACCCCATAGCTGTAAATAATGAAGTTGCAGTGTAATGATATATCATCTTATTGCTGCATCTT
TTGCCTTGCAGTCTTGAGTAC-------------TTGTGGTTAGCTAATGTTTATTTTCTGATTCTACTGATTCT-TGTT
AACAGGGTTGTCTGACATGCTTTGCAATGTTAGTGCTGGTCTGAAGCTTTTCTAGAAGCATTTGTGTGTTCTCATGCTCA
GGAGTTACAAGGAGCAATGGTGCTATG---GTCTATAACTTCCACTCATCTTCTACCGAAGAATGATCCTTAGCTTAGTT
ACTTAGCTTGATGTCTTTTTTCGAGGATAGGTTTGGAGTTGCATCCGCTTTTGTCTAGGTTGGTACTTCGACCAGAATTC
GCATGACACTATATGCCAAGATTAGTTGTTGTACTTCCTCTAATGCATGACTGAATGGAAACGACTGATTTATTTTTCTT
GTAATATGTGAACCATGTACTGCATCAACACTCAATGTAGATCGTGCTTTCAATTGGCTGAGCACAAGAACAATTGACAT
ATTGTGTATCACCAATAGCATATTCATGTGCTAACCAAAACAAGA-TTTTT---TTGGTGAAACGGTT-GCCTCCTACCT
GGCACCGCACAACCATCTCTTAGGAGGCGCCCCAA---------------------------------------------
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>chr3A_1
GGGTCAATTTACACATGATATAGCTAATATGTTGTATGGCGAATTAATTTAGGTCTGTTTCGGTGGCCAGCTACTGATAT
GTCATTAGTGGCTAGAACAAGGCACATACTATTTTTTCCTTTCGATTGGGTGATATACCCCACGGCTGTAAAGAAATGAA
GTTGCAGTGTCGTACGGCGAATTAATTTAGCTTTGTTTCGGTGGCCAACTGCTGACATATTATTAGTGGCTAGAACAAGG
CACGTACTTTTTTTTTTCCTTTCGATTGGGTGATATACCCCACAGCTGTAAAGAAATGAAGTTGCAGTGTCGTACGGCAA
ATTAATTTAGCTCTATTTCGGTGGCCAACTGCTGACATCTTATTAGTGGCTACAAAAAGGCACATACTGTTTTT-T--TT
CTTTCTATTGGGTGATATACCCCATAGCTGTAAATAATGAAGTTGCAGTGTAATGATATAGCATCTTATTTCTGCATCTT
TTGCCTTGCGGTCTTCAGTACTTGTGGTTAGTACTTGTGGTTAGCTGATGTTTATTTTCTGATTCTATTGATTCT-TGTT
AGCAGGGTTGTCTGACATGGTCTGCAATGTTAGTGCTGGTCTGAAGCTTTTCTAGAAGCATTTGTGTGTTCTCAAGCTCA
GGAGTTACAAGGAGCAATGGTGCTATG---GTCTTGAACTTCCACTGATCTTGTACTGAAGAATGATCCTTAGCTTAGTT
ACTTAGCTTGATGTCTTTTTTTGAGGATAGGTTTGGAGTTGCATCCACTTTTGTCTAGGTTGGTAC--------------
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>chr6B_929
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--------ACAGAGTGCAAAAGCAAAGAGGACTCAACACAAGCCACTCGATCTCGATCGACGCCAGTAA----CCGCCAG
CCCCGCGCGCCCCGCCACCAGAAACCACTAACCGCCGGCCGCGCTCCATGGACAGCACCGTCGAAGCAATGGCGGCCGCC
TACGACGCGCTGGTCGACGCCGCGGCCGCCGCCGTCCGCGAGCCCGGCCGGTCGGCGGCGCTCACGGACCTCCACCGCTG
CCTCGACGCCTTCAGCGACTCCTGCGACCGAGCCGAGGGCCTCGTCCAGGCGGCCGCCGCCGGCCTCGGCCCCGCCGCCG
CCCGCCACGACGCGCTGTGCCGCGCCGTGCGCGCGGTCGACAAGGATCTCCGGGCCGCCGG------CGGCGGCCAGGAG
GAGAACGAGATGGACCAGGAAAAGAATCGCCCTCCGACCACGCCGCTGGCGGCCGAGGACAACTAGCCCAATCGATCCAC
CTCGTCTCCCGTTGATGTGATGTTCA----TCGTTCTTGTTTTTTCCATGTGATGTCCATCGTTCTTCTTGGTTTCTTGG
TTGATGTTCCCGCTAATCTTGTTAGTCATCCACGGAGTAGAGCATTAATTCGCCGCCTCTGCTTGCAAAATAATCATGAG
AAAACCATCGAGGGGCTCATGTATTTTGTGGTTCGTCCTTCAAATCCAACAGGGTGTCCCTCAACTCACGATACAACTTT
TTTGAGGAGCCTACTCACGGTACAATGCATGCATGCTGCAAAATTCCGTTCCAAAT------------------------
TCATCCTGTGAAATCATGCATTGCATGCCGTCCGTCCACGAGATTAGTGTGAGGCGAGATCTGATTTGACAGTGGGAAGC
AACGCATGCAGGGAAATCCAAAGCTGGAGGACCAGCC-----------GCCAGCGTAGCGGCGGTTCGTCTTGGTTTGGT
GGCCACGGCTAGCTGACCAGACGTACTCAATCTCTCTCGGCAGGCATCAGCTGGGTGTTTCTTTCCCAGGCGGCCACGCG
ACCGCTATATGGATAAGGCGAAAACAGCGACAGTGGCACCAAAACCACCAACATCAGGCTACAGGATC-----CCTCTCG
CTGGCCTTTCGCTGTTGCATTGCTTTCCTGGTGCCGCGTAGCCACAAAGCAATTTATACTGCTAGCGCTCATCCCGGACC
AATTTTTTCCTTTTCAGGTAAGGAAAACCATAAAGAGATTCGTATAAACGATCGAGTTCGTGGTGCTTTTTCTGTTTTCG
ACAACAGAGTTTTCAGCTCCAGCGTGTTATTGTAGCATCAGAACAACGCATTTGAAAGAAGTTTCAGAGGTGGGGGTGAG
ATATATAAACGCTCAGGTTTTCAGTGTTCTTTTTCTTTTTTGAGAATGAGAATGAGTTTTCGGCGTGTTATTA-------
----TTATAGCACAATATTTGGTCACAGTTTCCGGGATGCGCACCGCCGCAGATCTTGCAGACTTTATTATGAT------
----------------------------------AGGCTCCAATTCTCCCAATGCAACTGTTTAACATTCTTCTGAA-AT
TCATTGTTTCCATGTGTCGTCCTCTCTAACTGGGACGTTTACCTGATAATTTGATATGGTCGATGAGCATCTATAACCTT
GTGTTGACGTCTTGATGGCCGCTAGAAAGGCCGAGACTGCATTATGTGAAGTCCCTAACAATCCTATAACATGCCCAAAA
CAATTCTAC
>chr6A_931
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----------AGAATGCAAAAGCGAAGAGGACTCAACCCAAACCACTCGATCTCGATCGACGCCAGTAATTAACCGGCAG
CCTTGCGCGCCCCGCCACCAGAACCCACTAACCGCCGGCCGCGCGGCATGGACAGCACCGTCGACGCAATGGCGGCCGCC
TACGACGCGCTGGTCGACGCCGCGGCGGCCGCCGTCAGCGAGCCCGGGCGCACGGTGGCGCTCACGGACCTTCACCGCTG
CCTCGACGCCTTCAACGAGTCCTGCGACCGAGCCGAGGGCCTCGTCCAGGCGGCCGCCGCCGGCCTCGGCCCCACCGCCT
CCCGCCACGACGCGCTGTGCCGCGCCGTGCGCGCGGTCGACAAGGATCTCCGGGCCGCCGG------CGCCGGCCAGGAG
GAGAACGAGATGGACGAGGAGAAGAATCGCCCTCCGACCACGCCGCTGGCGGCCGAGGACAGATAGCCCAATCGATCTAC
CTCGTCTCCCGTTGATATGATGTTCA----TCGTTCTTGTTTTTTCCATGTGATGTTCATCGTTCTTCTTGGTTTCTTGT
TT------------------------------------------------------------------------------
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>SNPs
--------------------------------------------------------------------------S---S-
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----------------S-----S-------------------------------------------S-------------
-S-----------S-----------S--------------------------------------------------SS--
------------------------------------------S------------------------S--------S---
---------------------------------------------------------------------S----------
---------S-------------------------S--------------------------------------------
---------------------------SSS----------------S---------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------S--------------------S---------------------------S----------S------------
---S-----------------------------------------SS----S----------------S-----S-----
-----------S----------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------S-S-----------------------------------------------------------
----------------------------------------------S-----S---------------------------
-----------------------------------------------S--------------------------------
---------------------------------------------------S----------------------------
-------------------S----------------------------------------SSSSSSS-------------
--------------S----------------------------------------------------------------S
-S-------S-------S--------SSSS--------------------------------------------------
------------------------------S----S-----S----------S---------------------------
-----S---------------------------------------S---SSS----------------------------
--------------------------------------S-S----SS----S--S-SSSSSSSSSSSSSSSSSSSSSSSS
-----------S-----------S--------------------------------------------------------
-------------------------------------SSSSSSSSSSS---------------S----------------
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-------S--------------------------S-------S-------------S-S-SS--SSS-SSSSS-------
-----------------------------------------------------------------S------S-------
--S---S-----------------------S-----------------S---------S-----------SSS-------
-----------------SSSSSSS-SSS---------------------------------------S-----S------
-------------S------------S-----------S----------------------------------SSSSSSS
SSSS-----------------------------S------S----------S-----------------S----SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------------------------------S--
---------------S--------------------------S-----------------------S-------------
--------------S---------------------S--------S----------S-----------S-S-----S---
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>forward_1087
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---------------------------CGCCCCAACTTCTCTCTCTC---------------------------------
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>reverse_2225
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----------------------------------------------------------------CTGCAGATACCTCTCG
CTGG----------------------------------------------------------------------------
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