>input_sequence_73972
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---------------------------------------------------------ATGGGTTGGCGGCCACAGCTGG-
---ACCTTTATAAATCACGGTCACGGACACGTCTACCTACCAACAACCCACACACGCGCCGCGCTCGGCACAAGTCCCAC
AGCCACA----------------CTGCACTGGACACACGGTCGCGCACGCGGCGCCGCGGAGAGGCGAGGACAC------
--AGA--CGGGGGAGGCGGCGATGGTAGAAGGCGGCAGCGGCGCGGGTGCTACGTCGACCTGCCGGCGCGGCGGCGGTGG
AGGCGGCATCGTCGGCCCGGCGGCCCGGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGGCGTCTCGTCCGGCGGCTGCGGC
GGCAGGGGAGGCAGGCGCTGTGCGCGGCCAGGCCGGCGGCGGCGTCGTCGTCTTCGTCGGCGGCCGCGGCGCTCCGGGGC
TGCCAGTACGACCCGCTGAGCTACGCGCGCAACTTCGACCAGAGCGGCTTCGGCGACCCGGACCCGGACGCGGACGCGGC
CAGCCTCTACTACAGCTACACCTTCTCCTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCG
CGGCCGTCGTCCCCGCGCCGAACGGTCTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAG---------------
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>chr6B_1_TraesCS6B01G185600
ATCATCTCAAGAACCCGAAATTCTAGCAGTAAAATAATGCTTAGCTAGCTCATCTGCTATCTGATTAGCTTCCCGGAAAC
AATGTTTAAATGATA-TTTTGGCCAAGTTCATTGCCAACTGCTTGCATTTAGAGACCAATGCAACGCCGGGTCCTGGATA
AGAGTCCATTTGCTGAATTGCCTCCACC----ACGAGCAATCAGATTCAATCTTCACATTGTTGCACCCCAAATTTTGCC
AGTAAGTATATTCCATTTCTAATTGCCATGAGCTCCACTGAAT-AAACATCTCGGATATGCGGAAGAAACCAAGTCACTT
ATGTTAGAATGTCACCCCGTTCATCACGAACAACAGTACCGAAAGCTCCAAATCAATCCATGAGACGGTTTT-TTCCACA
TATATTCTTTCTTCAGAGTCGGGAGCTTTGGAGGCATCGATCCTGATGTAATCTGTAGCTAGCATGCGAATAGACAGTGT
TGTTTTCTCGGGGTTTTGAATCATGATTCCTTTGACAAGTTATCGTCGTTGCCACCAAAGATACCACGCCGCCACAACAC
CCAGTTCGGCCACAGGTAGTCCATTCGAAACAACATCAAACTTTGAAAGATCTTCAT--AGTGACTGATCCTGGTCTGTC
CTCGCCAGTTGCTCTTTGAATGACATCTAGAAGTCCCTGCTGAGGCCACACTTCTTTCACGCGACGACATTTGAAGAGGC
AGTGCTGCAAGTCATCGGCACCCATCGAACGGCATGGGCATCCGGGCGAACAAGGTATGTATGAAAAAGAAAAAGGCCTT
CTACTTCTAGGAAAAGAAAATATCTTCTTTCCTAAGAAAAGAAAAATGAAATATCTTCTTTGCTAAGAAAAGAAAAAGAA
AAGATAGAATCTTCCCTCCCCCGATGAGAGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGACT
GCACTGCTCCGTGGCCGGATCGCC--------TCAGTTCGCCAACGGGTTTGCGCGAATGGGTTGGCGGCCACAGCTGG-
---ACCTTTATAAATCACGGTCACGGACACGTCTACCTACCAACAACCCACACACGCGCCGCGCTCGGCACAAGTCCCAC
AGCCACA----------------CTGCACTGGACACACGGTCGCGCACGCGGCGCCGCGGAGAGGCGAGGACAC------
--AGA--CGGGGGAGGCGGCGATGGTAGAAGGCGGCAGCGGCGCGGGTGCTACGTCGACCTGCCGGCGCGGCGGCGGTGG
AGGCGGCATCGTCGGCCCGGCGGCCCGGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGGCGTCTCGTCCGGCGGCTGCGGC
GGCAGGGGAGGCAGGCGCTGTGCGCGGCCAGGCCGGCGGCGGCGTCGTCGTCTTCGTCGGCGGCCGCGGCGCTCCGGGGC
TGCCAGTACGACCCGCTGAGCTACGCGCGCAACTTCGACCAGAGCGGCTTCGGCGACCCGGACCCGGACGCGGACGCGGC
CAGCCTCTACTACAGCTACACCTTCTCCTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCG
CGGCCGTCGTCCCCGCGCCGAACGGTCTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGGCGACAG
TAGCTTCCCTTTCTCTCTCCTCGGGTTCTCTTTTCCTCAACCTCTGGAGTGGAAAGGCAGCAGCTTCATTTAGTTTGATT
AAAGAAAAC-TTTTCTGTAGGGGAAAGTTCGGTCGGGAGAA-GACGATGCTTGTAAATTAATACCGTAGTACTCTATGTA
CTGTATGTGAGAAGAACGCCATTGCTGGGTCGATCGAGCTG-----TGCCATGCCATGCCATGCTCGGTCGGATTCTCGA
GGACCGT-TTCAGATTTCTGATTCTGAGCTGCCGAGGATAGGGTCGAGAGTACTATAATTGCAGC----GGCAGATGCCG
ATGGGCAGGGAGGACGTATAGGACCGATAGGCGCCATGAATGCGGTGGTACTTGCCGGCGGTGACGCCATCGCCATGGCT
GGCACTGGGTGGGAACGGAATGGGCGACGGTCGGGGGTGGTGGCGGCGCCATTATTGGCCCTGGAAATGGAATTCACGGC
TCCGCAGTCCCGTCCGTGATCTGTCGCCG----TCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGTGGGGGCGGAGT
CGGAGGAGGAGAAGATGCCTGCCAATCTGCCATGGCCGGCGAGACCGACCATGAC-------------GGCATTATGGTG
CGCCCTGTCACCCTCAGGAATCCTCGGATCTGATGCTTACCCAGGCTGATGGGACGCATTCCGGCCACTGGACCCAATGC
ATCCCGGTCAGGGATTTTACAGGATTCCGGTGCTG-TTTTTACTTTCACTGGGATGTGTGTGTTGAGCAGACGCTCCTGC
TTCGGTGCTTCATTAGAGCATCTTCAATACAAGATGCAAATTTGAAGATGTAAAAAATGTTTTACAGACTAGGAGGAAGA
GGAACAGGGGGAGGGAAATGAAATGAAAGCCAACTGATGGTCGGCACGCGGCCGCCAGTTTTACATCTCCAGATGAAGGA
AGTGCAAATTTGCATCATAAGGTGTCGTAGTTTACATCTTCGGAAGGCGAAAATA
>chr6D_1
ATCATCTCAAGAACCCGAAAATTTAGCACTAAAAGAATGCTTAGCTAGCTCATTTGCTACCTGATTAGCTTCCCGGAAAC
AGTGTTTGAATGATA-TTTTGGCAAAGTTCATTGCCATCTGCTTAAGTTTAGAGACCAATGCAATGTCGGGTCCTAGATA
AGAATCCGTTTGCTGAATTGCCTCCACCACAAACGAGCAATCAGATTCAATCTCCACATTGTTGCACCCCAAAT-TTGCC
AACAAGTATATTTCATTTCTAATTGCCCCGAGCTCCGCTGAAT-CAACATCTTGGATATGTAGAAGAAACCAAGTCACTT
CTGCTAGAAAGTCAACCCGTTCATCATACAC-----------AAGCTCCAAATCAGTCCATGAGACGGTTTTCTTCCACA
TATGTTCTTTCTTCTAAGTCGGGAGTTT-GGAGACACCGAT-CTGATGTAATTTGTAGCTAGGACGCGAATAGGCAGCGC
TGTTTTCTCAGGGTTTTGAATCACGATTCCTTTCACAAGTTGTCGTCGTTGCCATCAAAGGTACCACGCCGCCACAACAG
CCAGTTCGGCCACATGTACTCCATCCAAAACAACAATCAAGCTTTGATAAGATATTCGCAGTGACTGAGCTTGATTTGTT
CTGATCAACTGCTCTTTGAATGGCATCTAAAAGTCCCAGCTGAGACCACACTTCTTTCACACGACGACATTTGAAGAGGC
AGTGCTGCAAGTCATCGACACTGT-----------------------GAACAAGGTATGTATGAAAAAGAAAAAGGCCTT
CTACTTCTAGGAAAAGAAAATATCTTCTTTCCTAAGAAAAGAAAAATAAAATATCTTCTTTGCTAAGAAAAGAAAAAGAA
AAGATAAGATCTTCCCTGCCCCGATGTGGGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGGCT
GCACTGCTCCG--------TCGCC--------TCAGTTCGCAAAC-GGTTTGCGCGAATGGGTTGGCGGCCACAGCTGGC
CGGACCTTTATAAATCACGGTCACGGACACGTCTACCTACCAATAACCCACACG-----CGCGCCCGGCACAAGTCCCAC
AGCCACA----------------CTGCACTGGACACACGGTCGCGCACGCGGCGTCGCGGAGAGGCGAGGAGCGAGAGGG
AGAGA--CGTGGGCGGCAGCGATGGTAGAAGGCGGCAGCGGCGCGGGGGCTACGTCGACCTGCCGGCGCGGCGGCGGC--
-GGCGGCATCGTCGGCCCGGCGGCCCAGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGACGCCTGGTGCGCCGGCTGCGTC
GCCAGGGGAGGCAGGCGCTGTGCGCGGCCAGGCCGGCGGCGTCGTCGTCGTCTTCGTCGGCGGCCGGGGCGCTCCGGGGG
TGCCAGTACGACCCGCTGAGCTACGCGCGCAACTTCGACCAGAGCGGCTTCGGCGACCCCGACCCGGACGCGGACGCGGC
CAGCCTCTACTACAGCTACACCTTCTCGTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCG
CGGCCGTCGTCCCCGCGCCGAACGGCCTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGTCGCCAG
TAGCTTCCCTTTCTCTCTCCTCGGGTTC-CTTTTCCTCAACCTCTGGAATGGAAAGGCAGCAGCTTGTTTTAATTCGATT
TAAGAAGAGCCTTTCCGTAGGGGAAAGTTCGGTCGGGAGAACGACGATGCTTGTAAATTAATACTGTAGTACTGTAT---
--GTATGTGAGAAGAACGCCATTGCTCGGTCGATCGAGTTG-----TGCCATGCCATGCCATGCTCGATCGGATTCTCAA
GGACCGTATTCAGATTTCTGATTCTGAGCTGCCGAGGATAGGGTCGAGAGTACTGTAATTGCAGTGGCAGGCAGATGCCG
ATGGGCAGGGGGGACGTACGGGGCCGAGAGGCGCCATGAATGCGGTGGTACTTGCCGGCGGTGACGCCACCGCCA----T
GGCACTGGGTGGGAGCGGAATGGGCGACGGTCGGGGGTGGTGGTGGCGCAATAATTGGCCCTGGAAATGGAATTCACGGC
TCCGCAGTCCCGTCCGTGATCTGTCGCTG----TCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGTGGGGGCGGAGA
TGGAGGAGGAGAAGATGCCTGCCAATCTGCCATGGCCGGCGAGACCGACCATGACATCGACGCGTAACGGCATTATGGTG
CGCCCCGTCACCGTCAGGATTCCTCGGATCTGATGCTTGCCCAGGCTGATGGGACGCGTTCCGGCCACTGGACCGAATGC
ATCCCGGTCAGGGATTCTACAGGATTCCGGTGCTGCTTTTTACTTTCACTGGGAT-------------------------
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>chr6A_1
ATCATCTCAAGAACCTGAAAATCTAGCACTAAAAGAATGCTTAGCTAGCTCATCTGCTGCATGATTAGCTTTTCAGAAAT
AGTGTTTAAATGATACTTTCGGCAAAGTTCATTATCAACTGCTTGCATTCAGAGATCAATGTAATGTAGGGTTCTAGATA
AGAGTCCATTTGTTGAATTGCCTCCACCGCAAACGAGCAATTAGATTCAATCTTCACATTGTTGCACCCCAAAT-TTGCC
AACAAGTATATTCCATTTCTAATTGCCATGAGCTCCGTTGAATCAAACATCTCGGATATACGGAAGAAACCAAGTAACTT
CTGCTAAAAAGCCACCCCGTTCATCACGCACAATAGTACCGCAACCTCCAGATCAGTCCATGAGACGGTTTT-TTCCACA
TATGTTCTTTCTTCTGAGTCGGGAGCTTCGGAGACATCGAT-CTGATGTAATTTGTAGCTAGGAGCGAA--AGACTGTGC
TATTCTCTCAGGGTTTTGAATCACGATTCCTTTCACAAGTTGTCGTCGTTGCCACCAAAGGTACCATGCCGCCGCAACAC
CCAGTTCGGCCACAGGTACTCCATCCGAAACAACACT-AAGCTTTGATAAGATATTCA--------GAGCATGCTTTGTC
CTCATCAGTTGCTCTTTGA-------------------------------------------------------------
-------------------------------------------------ACAAGGTATGTAAGAAAAAGAAAAGGGCCTT
CTACTTCTAAGAAAAGAAAATATCTTCTTTCCTAAGGAAAGAAAAATAAAATATCTTCTTTGCTAAGAAAAGAAAAAGAA
AAGATAAGACCTTCCCTGCCCGATGT--GGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGAGT
GCACTGGTCCG--------TGGCCGGACCGCCTCAGTTCGCCAAC-GGTTTGCGCGAATGGGCTGGCGGCCACAGCT---
-GGACCTTTATAAATCACGGTCACGGACACGTCTACCTACCAACAACCCACACA-----CGCGCCCGGCACAAGTCCCAC
AGCCACAGCCACACTGCGCCGCACTGCACTGGACACACGGCCGCGCACGCGCCGCCGCGGGGAGGCGAGGAGCGAGAGGG
AGAGAGACGGGGGCAGCGGCCATGGTGGAAGGCGGCAGCGGCGCGGGGGCTACGTCGACCTGCCGGCGCGGCGGCGGCGG
AGGCGGCGTCGTCGGCCCCGCGGCACGGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGGCGTCTCGTCCGGCGGCTGCGGC
GGCAGGGGAGGCAGGCGCTGTGCGCGGCCAGGCCGGCGGCGGCGTCGTCGTCCTCGTCGGCGGCCGGGGCGCTCCGGGGG
TGCCAGTACGACCCGCTGAGCTACGCGCGCAACTTCGACCAGAGCGGCTTCGGCGACCCCGACCCGGACGCGGACGCGGC
CAGCCTCTACTACAGCTACACCTTCTCCTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCGCCTCGTCGGCCGCCTCCGTCG
CGGCCGTCGCCCCCGCGCCGAACGGCCTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGGCGCCAG
TAGCTTCCCTTTGTCTCTCCTCGGGTTC-CTTTTCCTCAACCCCTGGAATGGAAAGGCAGCAGCTTGTTTTAATTGGATT
AAAGAAGAGGTTTTCCGTAGGGGAAAGTTCGGTCGGGAGAACGACGATGCTTGTACATTAATACTGTAGTACTGTAT---
--GTATGCGAGAAGAACTCCATTGCTGGGTCGATCGAGCTGTGCCATGCCATGCCATGCCATGCTCGACCGGATTCTCAA
GGACCGTGTTCAGATTTCTGATTCTGAGCTGCCGAGGATAGGGTCGAGAGTACTGTAATTGCAGTGGCAGGCAGATGCCG
ATGGGCAGGGGGGACGTACGGGGCCGAGAGGCGCCATGAATGCGGCGGTACTTGCCAGCGGTGACGCCATGGCAG----T
GGCACTGGGTGGGAGCGGAATGGGTGGTGGTCGGGGGTGGCGGTGGCGCAATAATTGGCCCTGGAAATGGAATTCACGGC
TCCGCAGTCCCGTCCGTGATCTGTCGCTGTCACTCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGG-----------
----GGAGGAGAAGATGCCTGCCAATCTGCCATGGCCGGCGAGACCGACCATGACACCGACGCGTAACCGCATTATGGTG
CGCCCCGTCACCGTCAGGATTCCTCGGATCTGATGCTTGCCCAGGCTGATGGGACGCGTTCCGGCCACTGGACCCAACGA
ATCC-----------------------CGGTGCTG-TTTTTACTTTCACTGGGAT-------------------------
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>SNPs
--------------------S-------S-----S------------------------S--------------------
-S---------------------S----------------------------------------S-S--------S----
--------------------------------------------------------------------------S-----
-SS---------------------------------S-------------------------------------------
S--S-----S------------------S----S-------S-------------S------------------------
---S----------S-------------S----S-------S----------S---------S-S--------------S
---------S-------------S---------S-------S------------------S-------------------
------------------S-----S----------SSS--SS--SS-SS-SS-SSSS-----------S-S--S-S----
---SS-----------------S------S-------S------S---------------S-------------------
-----------------S---SSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
-----------------------------------------------S--------------------------------
------SS---------S--------S-S---------------------------------------------------
-----------SSSSSSSS--------------------------S----------------------------------
------------------------------------------------------SSSSS-----S---------------
-----------------------------------------------------------------------SSS------
-------------S---------------------------------S-----------------------------S--
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------------------------------------------------------------------S------------S
-----------------------------------------------------------S--------------------
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-------------------------S--------------------------------------------------S---
----------------------------S-------------------S-----------------SS----S--S----
------S-S------S------------------------------------------------S--------S---SSS
SS-----------------------------------------------------------------S----------S-
------------------------------------------------------S---------S---------------
----------S-------SS--S----S-----------------------------------------------SSSS-
--------------S----------------------------S-----S--S---------------------------
---------------------------S---------------------------------------------------S
S-------------------------------------------------------------------------------
-----S------S------S------------------S------------------S----------------------
----------------S--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_907
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-------AATCTTCCCTCCCCCGATGA-----------------------------------------------------
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>reverse_2561
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GGAACAGGGGGAGGGAAATG------------------------------------------------------------
-------------------------------------------------------
