>input_sequence_73965
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------------------------------------------------------------ATGTCCTGCTGCTGCGGCAG
CCTCAAGTACTGCTGCAAGTTCTTCGGCGGCTTGCTCGGCGCCCTCTTCCCGATCGGCGTCATCATCCTCATCTACTGGG
CCATCTTTCAGCCCCACCAAATCCGCGCCACCGTCGGCTCCGCCACGCTCACCGGCCTCACCGTCACCAATGCCTCCGT-
--CGTATCCTACCGCCTCGCCGTCACCCTCGACATATACAACCCCAGCCTCCGCGTCGGCATCTACTACGACACGCTGGA
CGCCGAGCTCAGCTA------CCGCGGCGCATCGCTCGGCGGCCCCGCCGTTGGCGCTTCCACGGCGTCCCCGGCCGAGT
TCTACCAGCGGAGGAAGAGCTGGGAGACGGTGAAGGTGGAGTTCGACGGGAGCAGTGGCGGCATCCTCCCCGGCGACGTT
GCTGCGGAGCTGGAGAAGGAGATGGGTCGGGGGACGGTGAGCTTGGAGGTCGCCGTGGACGCGCGGGTGAGGTACAGGTT
CAACACCATCAAGATTCGCCAGAAGCCCAATTTGTGGTGCTCGCTCACCATCCCGGTTAAGCCGGATCAGGGCCGCGGCG
TCGGCGGCGCTCTTACCTCCGGCGACCGCTGTAGCGTCAAGTATTGA---------------------------------
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>chr5D_1_TraesCS5D01G133500
ACATTTTGTTGAAAATGTGAACTAAATTTTCATATCTAGAACAT-TTTTTTGGAAAAAGTGAACAATTTTTAAAATTCTA
AACAATATTTGAAAATGCAAACATTCTAA-CTTTATTTGAATGTATGAATGTTTTTTAGAATAAGCGAATATGTTTTGAA
AACTAAA-TTTTATGAATTTCTGCTCATTTTCTAAAATAATTGAACAAAACATAAAAATAGGAACGTTTTTT-AAATTTT
GAAAATATAAACATTTTCTAAAATTTCTAACATTTTTTGAACACCTGTGCATTTTAAAATATAAACTTGAAAAAGAAAAA
AGGAAAAGGAAAA---------AGAATG-AAAAAAGAAAAAAGAAACAGAAAAGGAAAAGGACATGTCGTTTGGCTCAGT
C-----GGGGGCGCCCC------------------------------------------------------TGCCGATGC
GAAGCGTGCTCTGCGACTCTGTCAGTAGGGTATCGCTGCAAAGCGTGGCCAACGCCCGTTGCGAGTTGGGCTTGCCCGCT
GC--------------GGTCCTG-------CCGCCCGGAGCTTGCGCGCTTCGGTGCTGTAGG-TAGACG-AGGTCAGTC
ATCTGCTCAAAATTACTGCTAGCACAACTCCAAACCCGTTCAACTCGCCAGCCGCTCCAGCTGCCTCGTCTCCCATGTGC
CATCGCCTGACAGCAACGCTCGAGGCATACACAAAGACTTGTGGCATCCAGGTGCCCAAGTCTTCCCTAGGGTAAAGGGG
ACAAGAGTTGACACACGCGGTTTAACAGCCTGTTCCCCGGTGCTTCCGACGAGCCAAACGACATGTCCTTCCACCCATAA
ATAAACGGACTTCAACTACTACTAC----ACTTGGTTAGTCAATGTCAATTGGTGATTATTAGGGAATCAATCACGTACG
CGAAACATTTCCAACTCCAAGCTGGCAAGTTTGTTACGTATATAAAACACATCGGCCACTCGCATGAACGATCAGGACAC
CCGCCCTCTCCCTCCCCTCCCCTCCCCATCGAGCCGAGCCCCACCCACCCCGCCATCGCCATGTCCTGCTGCTGCGGCAG
CCTCAAGTACTGCTGCAAGTTCTTCGGCGGCTTGCTCGGCGCCCTCTTCCCGATCGGCGTCATCATCCTCATCTACTGGG
CCATCTTTCAGCCCCACCAAATCCGCGCCACCGTCGGCTCCGCCACGCTCACCGGCCTCACCGTCACCAATGCCTCCGT-
--CGTATCCTACCGCCTCGCCGTCACCCTCGACATATACAACCCCAGCCTCCGCGTCGGCATCTACTACGACACGCTGGA
CGCCGAGCTCAGCTA------CCGCGGCGCATCGCTCGGCGGCCCCGCCGTTGGCGCTTCCACGGCGTCCCCGGCCGAGT
TCTACCAGCGGAGGAAGAGCTGGGAGACGGTGAAGGTGGAGTTCGACGGGAGCAGTGGCGGCATCCTCCCCGGCGACGTT
GCTGCGGAGCTGGAGAAGGAGATGGGTCGGGGGACGGTGAGCTTGGAGGTCGCCGTGGACGCGCGGGTGAGGTACAGGTT
CAACACCATCAAGATTCGCCAGAAGCCCAATTTGTGGTGCTCGCTCACCATCCCGGTTAAGCCGGATCAGGGCCGCGGCG
TCGGCGGCGCTCTTACCTCCGGCGACCGCTGTAGCGTCAAGTATTGATCACCACAATTACAATCGCTGTCGGTGAAGGAA
GCTTGACTTGCGCACTTCCTTCGGTTTGCATCTTTTTCATGTTTCCTTTGGAGATTAGCGTGCTAGTTTCATCGGTTTGT
GTTTTGTGTAAAGATTTGCATTATTTGGGATGGTGATCGTC---------------------------------------
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---------------------------------------CCCTGTATTATCACAGTTATCGAAACTTCGTTGCGTTCTTA
AATTATTCATCTCGACAAGTGGTGTGGCAATGGTATAAACATGCTTCATACGCACGTTGTAAGGTCAACCCAAGGCGCCG
ACGCAAACAGTGCGAAATTTGTCTCCTTTTTGTCCTTTGGATTGGCAGTAGGGTGGCGTCCGTTGTTGGCCGTGCATGTC
TGTAGCGTGTAAACTGACCGACCCATTTGATCCGTCTAGTCAAAAAAATTGTCAATTTTTCTTTATTTGGCATTCTATAC
ATATAAATCAACTAGAGAAATAAAAATAAAACATTAACAAACAAGTCATATAGTTTTTGGCTCTACAGACAAGACAAGGA
GGTCATCGGACGAAAGTGTAAGGTGGGCTGGAAGGTAGTCACCACACCGGAGCGCACC-GGGGACTGGGCATCCACGACC
TGGCCAATTCGCTCGTGCCCC-GCGGCTCTGGTGGCTTTGGCTCTCCTGGACGCAGCCAGCCCGCCCGTGGGTAGGCACG
AGCATCCCTTGCGACGCTATCGAT-------CGCGCCCTGTTCACTGCCTGCACGGTGGTCACCATTGGCGGCGCCACAA
CGGCCTCCTTCTGGTCCTCCTCGTGGCACACCTAGTGGTTTTCGC------------------------CCAATCCATCA
GAAAGAACAGATCAATCCGGGAGGCATTGCATCACGACAGATGGATTCTGGACCTTCGACATGGTGACCATGACAGTATC
ATGCATCTGGTGCTCCAACTGGCTAGGGAGATACGAAGCGACGGAATCACACTAGAAGAGGGGAGGGTGGACACGATCAG
ATGGACTCTTTGCAGCTCTGGACAGTACACCGCGCGCT
>chr5B_5
----TTTGTTGAAAATGTGAACTAAATTTTCATATCTAGAACATTTTTTTTAGAAAAACTGAACAATTTTTAAAATTCTA
AGCAATATTTCAAAATGCAAACATTCTAAACTTTTTTCGAATGTATGAACATTTTTTAGAATAAGCGAATATGTTTTGAA
AACTATTTTTTTATGAATTTCTGCTCATTTTCTAAAATTTTGGAACAAAATATAAAAACAGGAACGTTTTTTAAAATTTT
GAAAATACAAACATTTTCTAAAATTTCG--CATTTTTTGAACACCTGCACATTTTAAAAAATAAACTTGAAAAAGAAAAA
AGAAAAAGAAAAA---------AGAATTAAAAAAAGAAAAAAGAAACAGTAAAGGAAAAGGACATGTCGTTTGGCTCAGT
CGGGGGCACCCCTGTGCGAAGCCCCGACTATGTGCTGCGGCACATAAGATTTTCCTATCCACACGCCCAGATGCCGATGC
GAAGCGTGCTCTGCGACTCTGTCAGTAGGGTATCGCTGCAAAGCGTGGCCAACGCCCGTTGCCAGTTGGACTTGAAGGAT
CTCATTCTCACCGGAAGGCCCTG-------CCGCCCCGAGCTTGCGCGCTTCGCTGCTGTAGGGTAGACG-AGGTCAGTC
TTCTGCTCAAAATTACTGCTAGCACGACTCCAAA----------------------------------------------
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------------------------------------------------------------------------------CA
GAAAAAACAAATTAGTTCAGGAGGCGTTGCATCAGGACAGATGGATTCTGGACCTTCGACATGGTGACCATGACAGTATC
ATGCATCTGGTGCTCCAACTGGCTAGGGAGATTCGAAGCGCCGGAATCACACTAGAAGAGGGAAGGGCAGACACGATCAA
ATGGACTCGTTGCAGCTCCGAGCAGTACACCGCGCGCT
>chr5A_7
------TGTTGAAAATGTGAACTAAATTTTCATATCTAGAACATTT--TTTCAAAAAACTGAACAATTTTTAAAATTCTA
AACAATAATTGAAAATGCAAACATTTTAAACTTTTTTTGAATGTATGACCATTTTTTAGAATAAGCGGATATGTTTTGAA
AACTATTTT--TATGAATTTCTGCTCATTTTCTAAAATTTTGGAACAAAATTTAAAAACAGG------------------
---------AACATTTTCTAAAATTTCGAACATTTTTTGAACACATGTACATTA-AAAAAATAAACTTGAAAAGGAAAAA
GGAAAAGGAAAAAGAAAAGAAAAGAAAAAAGAAACAGAAACAGAAACAGAAAAGGAAAAGGACATGTCGTTTGGCTCAGT
CGGGGCGGGGGCGCCCC------------------------------------------------------TGCCGATGC
GAAGCGTGCTCTGCGACTCTGTCAGTAGGGTATCGCTGCAAAGCGTGGCCAACGCCCGTTGCCAGTTGGACTTGAAGGAT
CTCATTCTCACCGGATCGTGTAACCTACGCCCGCCCCGAGCTTGCGCGCTTCGCTGCTGTAGG-TAGACCTAGGTCAGTC
TTCTGCTCAAAATTACTGCTAGCACAACTCCAAACCCGTTCAACTCGCCAGCCGCTCCAGCTGCCTCGTCTCCCATGTGC
CATCGCCTGACAGCAACGCTGGAGGCATACACAAAGACTTGTGGCATCCAAGTGCCCAAGTCTTCCCTAGGGTAAAGGGG
ACAAGCGTTGACACACGCGGCTTAACAGCCTGTTCCCCGGTGCTTCCGACGAGCCAAACGACATGTCCTTCCACCCATAA
ACAAACGGACTTCAACTACTAGTACTAGTACTTGGTTAGTCAATGTCAATTGGTGATTATCAGGGAATCAATCACGTACG
CGAAACATTTCCAACTCCAAGCTGGCAAGTTT-----GTATATAAAAC-------------GCATGAACGATCAGGACAC
CCGCCCTCTCCCTCCCCTCCCCAT----------CGAGCCCCACCCACCCCGCCATCGCCATGTCCTGCTGCTGCGGCAG
CCTCAAGTGCTGTTGCAGGTTCTTCGGCGGCTTGCTCGGCGCCCTCTTCCCGATCGCCGTCATCATCCTCATCTACTGGG
CCATCTTCCAGCCGCACCAAATCCGCGCCACCGTCGGCTCCGCCACGCTCACCGGCCTCACCGTCACCAATGCCTCCGT-
--CGTATCCTACCGCCTCGCCGTCACCCTCTACATATACAACCCCAGCCTCCGCGTCGGCATCTACTACGACACGCTGGA
CGCCGAGCTCAGCTA------CCGCGGCGCATCGCTCGGCGGCCCCGGCGCTGGCGCTTCCACGGCGTCCCCGGCCGAGT
TCTACCAGCGGAGGAAGAGCTGGGAGACGGTGAAGGTGGAGTTCGACGGGAGCAGTGGCGGCATCCTCCCCGGCGACGTT
GCTGCGGAGCTGGAGAAGGAGATGGGTCGGGGGACGGTGAGCTTGGAGGTCACCGTGGACGCGCGGGTGAGGTACAGGTT
CAACACCATCAAGATTCGCCAGAAGCCCAATTTGTGGTGCTCGCTCACCATACCGGTTAAGCCGGATCAGGGCCGCGGCG
TCGGCGGCGTTCTTACCTCCGGTGACCGCTGTAGCGTCAAGTATTGATCACCCCAAATACAATCGCTGTCGGTGAAGGAA
GCTTGACTTGCGCACTTCCTTCGGTTTGCATCTTTTTCATGTTTCATTTGGAGATTAGCGTGCTAGTT-CATCGGTTTGT
GTTTTGTGTAAAGATTCGCATTATTTGGGATGGTGATCGTCAGAAATTCCTGTGCACACGATTGTTTGACAGATGATTTT
TGGACGATGCTTGGATCGATGGCTGCTGCATACAGAACATACGTGATAAACGCCTGTAGTTCTCTGTCCTCTCAAAATCG
TGCACAAACGATCGTCCGTGTACCAGCGCTCGCAGTCGTCCCTGCATTATCACAGTTATCGAAACTTCGTTGCGTTCTTA
AATTATTCATCTCGACAAGTGGTGTGGCAATGGTATAAACATGCTACATACCCAGGCTGTAAGGTC--------------
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>chr6D_1063
CCTCGTCGCCGC--------------------------------------------------------------------
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------------------------------------------------------CGGCTTCGTCATCCTCATCTACTGGG
CCATCTTCCAGCCGCACCACATCCGCGCGACGGTCAGCTCCGCCACGCTCGCCAACCTCACAGTGGCCCCCGACAACGCC
ACCGTCTCCTACCGCCTCACCGTCGGGCTCGAGCTCTACAACCCCAGCCTCCGCGTGCCCATCTACTACGACGCCCTCGA
CGCCGAGCTCCGCGCCGGCGGCGGCGGGGCCTCCCTCCGCGGCCCCGCTGCCCGCGTCGCCTCC---TCGCCGGCGGAGT
TCCTGCAGCGCAGGAAGAGCGCCGACACGGTGAGGCTGGAGTTCGACGGGAGCAGCGGCGTCGGCGTCCCCGGCGACGTC
GCCGGGGAGCTGGCGAGGGAGGCGGCCGCCGGGGTCGTGAGCTTTGAGGTGGACGTGGATGCGCGGGTGCGCTACAGGTT
CGCCAGCATCAAGATCCGCCAGAAGCCGAGGATTTGGTGCTGGCTGACGGTTCTGGTCAAGCCGGAGGGTGGCGTCGGTT
TCGGCGGCGCTCTGGCCTCCGGCGACCGCTGTAGCGTCAAGTACTGAT--------------------------------
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>chr4B_2122
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--------------------------------------------------------------------ACAAGATGAGGA
GGTCACCGGAGGGAAATGTAAGGTGGGCTGGAAGGTGGTTACCACGCCGGAGCGTATCGGGGGACTGGGCATCCATGACC
CAACGAAGTTCGCAAGTGCACTGCGGCTCCGGTGGCTTTGGCTCTCCTGGACGCAGCCAGGCTGCCCGTGGGGCGGCACG
GGCACTCCTTACGAGTTGCGACGCTGCTAACCGTGCCCTGTTCATAGCCTATACGGCAGTCACCATTGGTGATGGTGCAA
CCGACTCCTTCTGGTCCTTCTTGTGGCTGGGAGGCAGGCAGCTGTGCCTGGCGTACCCTACGGTTTTCGCCAACCCATCA
GGAAGAACAGATCAGTTCAGGAGGCACTGTATGAGGGTCGATGGATACTTGACCTTCGCCATGGTGACTACGGCAGCATC
GTGCA-CTTGTGCTTTAACTGGCAAGGGAGATTCAAAGCACTGGCATTACACTGAAAGAGGGGAGGGATGGCGCGATCAG
ATGGACCTTATGCAGCTCCGGGCAGTACACTGCGCGCT
>SNPs
S-SS-----------------------------------------------S------S---------------------
----------------------------------S--------------SS-----------------------------
-----SS-------------------------------SS-S--------S-------S---------------------
-------S-------------------S--------------------S----------S--------------------
--S-----S------------------S----------------------------------------------------
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--------------------------------------------------------------S------S----SSS-S-
SS----------------------------------S----------------S--------------------------
S-------------------------------------------------------------------------------
--------------------S-----------------------------S-----------------------------
-----S--------------S-----------------------------------------------------------
-S-------------------S--------------------------------------S-------------------
--------------------------------SSSSS-----------SSSSSSSSSSSSS-------------------
----------------------SSSSSSSSSSSS----------------------------------------------
--------S---S----S--------------------------------------------------------------
-------S-----S------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
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---------------------------------------------------S----------------------------
----------------------------------------------------S---S-----------------------
---------------------------------------------S----------------------S-----------
----------------S---------------------------------------------------------------
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--------------------------------------------S-----------------------------------
---------------------------------------------S-----S--S-S---------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS----
-----S----S-S--S--------------------S--S-----S--------S-S------------------S----
SSS-S--S-SSSSSSSSS-S---------S------------------------------S-S---------SS------
S---SS----S---SSSSSSSSSS---------S----------SS----SS----SS-----------S-SS-SSS---
-S-S--------------S--S-----SSSSSSSSS--SSSSS-S----------------------------S------
--------------S-S-S---------------S---------------------------------------------
--------------------------------S-------S--------------------------SS-----------
------------------S--S----------------
>forward_993
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-------------ACTCCAAGCTGGCAAGTTTG-----------------------------------------------
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>reverse_2246
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-----CGTGTAAACTGACCGACCCA-------------------------------------------------------
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