>input_sequence_73948
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--------------------------------------------------ATGCTGGGCTGCTTCTCCCGGCTCCGGCGG
CCGGCCTCCGCCGCGGCCGGGGCGCCGGCTCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCC---------TCCAC
ACCGGAGACCTCCCCGCGCTCGTCCTCCTCCTCCGCCCGCTTCAAGAGCGCGTGCCTCCGGGACGGCGGCAGGGGCGGGG
ACGTGGATGTGACCGTCGCGAAGGAGTGCCCGCCGCTGTCGTCCATGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATC
GCGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGT
GCTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGG
AGATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACCGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTG
GCGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGA
CCTCGACGCCGACGACGAGCAGCACAGCAGCATGTAG-------------------------------------------
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>chr4A_1_TraesCS4A01G030800
AGCATACAAAATTATCACTGGTCATCGGGATTTCATTCCAGGACTGGCATGGATCTGGAAAACTTGTTGTCAACTCAAAG
ACAAGATTTTCTTCTGATTGCTTCTTCATAACATGAAAAACACAAGACCCATGCTACAGCGGGAAAACTTCTTCATTCCT
GATTATACTTGTCTTTTATGCGGCCTACAGGTGCTTGAAACTAGGG-ATCACCTTTTCCTACATTGCCCATTTACCAAAT
GTTGTTGGACTTATTTATGTCCTACATGGACTCCTACATCCCCGGGCATCCAACACGAGATCAACAACTTAAAAGCCCTC
CTTTGTGTTCCATCCTCTCTGGAGATCATCATCCTGCCTTCTTGGGCTATATGGATGGGAAGATAGCAGGTGATACCGGG
CGTTAGGTGATACCGGCTCCCGAAAGCCATTGGATCTCTGATCCAATGGCTCCCGGGAGCTCTTGAACATTTTGCAAAAA
TGTCATCCGAAAGTCTTCAAATTTCACAGATTTCAAAGAGCCGTCGGATCTTAAATCCAACGTCTCAGAAGCCCGTATCA
CGGTATCATCTAAGTGCTGGTAGCACTTGATATTTTCCCCTATATTCTTGTAGGAGGATATTT---AAAGAGATGCACTG
GCTCACCTAGAGAGCAA---------------------------------------------------------------
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----------------CTAATCTAGGAACCTGCGAATAATCCCTGCATGAGGAAGCCGCATCTACTCCGCCTGTTAATTA
GGCCGGGGAGTAAC--TACCCCTTCTCTTCTCGGACAAACTAGTGTCCCTTTGTCAGCTCTGCACTGAACTCAATACGTC
CAATTATAGGTGAGCCCCTCCTACCAACCTGACGAGGCGCCACTCACTTCACTCCACTTCCCCTATAAACTCCCCGCAGC
ATCCACCACGCTCTCCCTCCATTCACCGCGCACAACCACCTCCCCCACTCTCTCCAGCCAAGCTG-----GCTAGAGAGC
GAGCCCAGGGAGCTAGCTGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGG
CCGGCCTCCGCCGCGGCCGGGGCGCCGGCTCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCC---------TCCAC
ACCGGAGACCTCCCCGCGCTCGTCCTCCTCCTCCGCCCGCTTCAAGAGCGCGTGCCTCCGGGACGGCGGCAGGGGCGGGG
ACGTGGATGTGACCGTCGCGAAGGAGTGCCCGCCGCTGTCGTCCATGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATC
GCGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGT
GCTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGG
AGATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACCGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTG
GCGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGA
CCTCGACGCCGACGACGAGCAGCACAGCAGCATGTAGCAGCCGCGCCGACGTGCCTGCCTGCCTGCCTGCCTGCAGAGCT
CAACACTTTCGTCCATTATTTCTCATATTTTTTCGGGTGCAAGATGCTGGTGCTGTGTGC-TCAGTTCCCAGCAGACAGG
CCATGCATCTGATCTGACTGTAAAAAGAATTGTTCGTGTGCAATTTCGCGGCAAAAAAAGCCGCTTTGTACCTTTGTGTG
GGCGTTGGCTGCTTTTGCCCTTTATGAAAGGCGTGAGCGTGCTAGCGAAGACGGGGAATATCTTAGCTTCCACAATTGCA
CCGCTTTGTTTCTTTGTGTAATTGCGTTTGTCTTTTCAGCCACCTCCCCGCGCTTTCA-------CCTTTAGCTTTGTGT
TGGGGCATCTGAAGGCTAGTTTGGTA-------------------------CATGTCAGGCATGGTTATGCCGTGACCAT
TGCTTTG-------------------------------------------------------------------------
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---------TACGTAGACACGTAGTAAATGTGAATGCAATTCTGTCATTTTACT-CTCTTGGACCGAGTAATTTTGGGAT
CGCCACA---------------CACCTTGAGACGGGCGAGAGGGGGGGGGGGTCTTCGGATCC-----------------
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--------------------------------------------AGCAGCGGGACGCAATAATAAACAGACGCCGTGCAA
AACCAACCGCCGCCGTACGCGCATAGGCTCACTCTGTCACTCACAC-----------------------ATGGCCGCTGT
ACTCAACTATTCCGTCGAC-----GGATAGATCGCGGACGCGTGGTAAACCAGTAACCATCACGCGCCAATCTTTTTCCT
CTGGTTCGAGATCACGCGGCCGGCCGAAATTAAGAGGATTGAGATCTATCATG----GACCGTCTGTCACTCTCTCCCCC
GTGCCTTCCTCGCGAACCCATCCAAAAAGAGCCGGCCGCGATGGCGAAAGGCGAAGCGATCAAGCCGGTGAGCGTGAGGG
GGCGACGCTGACAGCGCAACCGCGAGCGGAGATCCGCGCAGATCGTGGCCGCTTTGCTCATGAATCGGATCACATGCAGA
CGCAGGCAGGCAAAATGTGTGTGCTCCAGCCGGGGCCTGCGTGATTACCCTGCTGAGTGCT
>chr4B_1
AGCTTACAGAATC-TCACTGGTCATCAGGATTTCATTCCAGCACTGGCATGGATCTAGAAAACTTGTTGTCAACTGAAAG
ACAATATTTTCTTCTGATTGCTTCTTCATAAAAGGCAGACAA-AAGATCCATGCTCCAACGGAAAAACTTCTTCATTCCT
GATTATGCTTGTGTTTTATGTGGCCTACAAGTTCTTGAAACTATGGAATCACCTTTTCCTACATTGCCCATTTGCCAAAT
GTTGTTGGACTTATTTATGTCCTACACGGGCTCCTACATTCCTGGGCATCCAACATGAGATCAACAACTTAAAAGCCCTT
CTTGGTGTTCCATTCTCTCTGGAGATCATCATCCTAGCTTCTTGGGCTATATGGTTCACCAGGAATGACTCCATATTTTA
AAGGCCTTCCCCCAAA----------------------------------------------------------------
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--------------------------------------CCTATATTTTTGCGGGAGGATATTTAAAAAAGAGATGCACTG
GATTACCTACAGAGCAGCTACTATGGAGGCTTTCAAGCATGGGTTGATGCATTCAAATAATTGACATGGCAGTTGTCATA
GTTTTGTTGTACAGAACATTTTGTACCTATTTTTGTTTGAAAACCAATAAAAATACGCAACAGAGTCGTGCAGCTTCCCT
TAAGAAAAATCCAATCCTCCTCGAACAAAAAAAAGGCAATCTAATCTATGAACCTGGACAATCTTTTAGTTTTCTTAGAC
AAGAAAATGGCAAAGCCTAATCTAGAAACCTGCGAATAATCCCTGCATGAGGAAGCCGCATCTACTCCACCTGTTAATTA
GGTCGGGGAGTAATTATACCCCTTCTCTTCTCGGACAAACTAATGTACCCTTGTCAGCTCTGCACTGAACTCAATACGTC
CAATAATAGGTGAGCCCCTCCTACCTACCTGACGAGGCGCCACTCACTTCACTTCACTTCCCCTATAAACTCCCCGCAGC
ATCCACCACGCTCTCACTCCATTCACCGCGCACAACCACCTCCCC-GCTCTCTCCAGCCGAGCTG-----GCTAGAGAGC
GAGCCCAAGGAGCTAGCTGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGG
CCGTCCTCTGCCGCGCCAGGGGCGCCGGCGCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCGCGTCGACCTCCAC
CCCGGCGACCTCCCCGCGCTCGTCCTCCTCCTCCGCCCGCTTCAAGAACGCGTGCCTCCGGGACGGCGGCAGGGGCGGGG
ACGCCGA------CGTCGCGAAGGAGTGCCCGC---TGTCGTCCGCGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATC
GCGTCGCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCGGCCGT
CCTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGG
AGATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACAGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTC
GCTCTCAACGACAAGCGCGCGCACCGCTACATCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGA
CCTCGACGCCGACGA---GCAGCACGGCAGCATGTAGCAGCTGCGTCGACGTGCCTGCCTGCCTGCCTGCCTGCGGAGCT
CAACACGTTCGTCCATTTCTCATAT--TTTTTTGGGGTGCAAGATGCTGGTGCTGTGTGC-TCAGTTCCCAGCAGACAGG
CCATGCATCTGATCTGACTGTAAAAAAAATTGTTCGTGTGCAATTTCGTGGC---AAAAGCCGCTTTGTACCTTTGTGTG
GGCGTTG----CTTTTGCTCTTTATGAAAGGCGTGAGCGTGCTAGCGAAGACGGGGAATATCTTAGCTTCTACAATTGCA
CCGCTTTGCTTCTTTGTGTAATTGCGTTTGTCTTTTCGGCCACCTCCCTGCTCTTTTCACTGTGTCCTTTATCTTTCTGT
TGCGGCATCTGAAGGCTAGTTTAG--CACTAAATAGAGTGTGCGCACAGGTCATGTCAGACAAGGTTATGCCGTGACCGT
TTATACTCCCTCGGTCTCTAAATATAAGTCTTTTTAGAGATTTCAATAAGAGACTACATACGGAGCAACATAAGTGAATC
TACACTCTAACATATATCTATATATATATCTATATTTAATTTGCATTGATATCTTTAAGAAAAACTTATATTTAGGAACG
GAGGTAATATACT-------GTAGTAAATGTGAATACAGCTCTGTCGTTTTTTTACTCTTGGACCGAGTAATTTTGGGAT
CGCCATTTGCAATTGCGCCACGCACCTTGAGACGGGCGAGAGAGA--GGGGGTCTTCGGATCC-----------------
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--------------------------------------------AGCAGCAGGACGCAATAATAAACAGACGCCGTGCAA
AACCAACCGCCGCCGTACGCGCATAGCCTCACTCTGTCACTCACACGGGCAGCTCTGCCCTGCTCACACATGGCCGCTGT
ACTGAACTATTCCGCCGAC-----GGATAGATCGTGGACGCGTGGTAAACCAGTAACCATCACGCACCAATCTTT-TCCT
CTTGTTCGAGAGGAC----CCGTCCGAAATTAAGAAGACTGAGATTTATCAAT----GACC----GTCACTCTCTCCCCC
GTGCCTTCCCGACGAACCTATCCAAAAAGAGCCGGCCGCAATGGCGAAAGGCAAAGCAACGAAGCCGGTGAGAGTGAGGG
G-CGACACTGACAGTGCAACCGCGAGCGGAGATCCGCGCAGATCATGGCCGCTTTGCCCATGAATCGGATCAAATGCAGA
TGCAGGCAGGCAAAATATGTGTGCTCCGGCCGGGGCCTACGTGATTACCCTGCTGA-----
>chr4D_654
CTAATCT-------------------------------------------------------------------------
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------------------------GAAACCTGCGAATGATCCCTGCATGAGGAAGCCGCATCTACTCCACCTGTTAATTA
GGTCGGGGAGTAATTACACCCCTTCTCTTCTCGGACAAACTAGTGTCCCCTTGTCAGCTCTGCACTGAACTCAATACGTC
CAATAATAGGTGAGCCCCTCCTACCAACCTGACGAAGCGCCACTCACTTCACTTCACTTCCCCTATAAACTCCCCGCAGC
ATCCACCACGCTCTCACTCCATTCACCGCGCACAACCACCTCCCC-ACTCTCTCCAGCCGAGCCAAGCTAGCTAGAGAGC
GAGCCCAAGGAGCTAGCCGAGCCCGCTTCGAGGCAAGAATTCAAAGCGCCATGCTGGGCTGCTTCTCCCGGCTCCGGCGG
CCGGCCTCTGCCGCGGCGGGGGCGCCGGCCCCCGTGCAGCCGCCCGACGAGGCGTCCACGTCGGCCGCGTCGACCTCCAC
CCCGGCGACCTCCCCGCGCTCGTCCTCCTCTTCCGCCCGCTTCAAGAACGCGTGCCTCCGGGACGGCGGCAGGGGCGGGG
ACGCCGA------CGTCGCGAAGGAGTGCCCGCCGCTGTCGCCCGCGCTCGCCGTGGACTCCGGGCTGTCGTCGGCCATC
GCGTCCCGGCGGTTCTTCCTCGCCTCCCCGGGCCGGTCCAACTCCATCGTGGACTCGTCGGCGGCGCACGCGGCCGCCGT
GCTGGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACCTACTCCCCGGACCCGCACGCCGACTTCCTGCGGTCCATGGAGG
AGATGTCGGCGGCGCTGCGGCTGGACGCGCGGCGGCGCGGCGACAGGGCGCGCCTCCACGAGCTGCTGCTCTGCTACCTG
GCGCTCAACGACAAGCGCGCGCACCGGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCCTCACCGCCACCGACGA
CCTCGACGCCGACGACGAGCAGCACGGCAGCATGTAGCAGCTGCGTCGACGTGCCTGCCTG--TGCCTCCCTGCAGAGCT
CAACACTTTCGTCCATTTCTCATAT--TTTTTTGGGGTGCAAGATGCTGGTGCTGTGCTCGTCAGTTCCCAGCAGACAGG
CCATGCATCTGATCTGACTGTAAAAAATTATGTTCGTGTGCAATTTCGCGGC---AAAAGCCGCTTTGTACCTTTGTGTG
GGCGTTG----CTTTTGCTCTTTATGAAAGGCGTGAGCGTGCTGGCGAAGACGGGGAATATCTTAGCTTCTACAGTTGCA
CCGCTTTGTTTCTTTGTGTAATTGCGTTTGTCTTTTCGGCCACTTCTACGCTCTTTTCACTGTGTCCTTTATCTTTCCGT
TGGGGCATCTGAAGGCTAGTTTGGTACACTAAATAGAGTGTGCGCACAGGCCATGTCAGGCATGGTTATGCCGTGACCAT
TACTTTG-------------------------------------------------------------------------
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---------TACA-------GTAGTAAATGTGAATACAATGCTGTCGGTTTTC-ACTCTTGGACCGAGTAATTTTGGGAT
CGCCATTTGCAATTGCGTTGCGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGCAGGACGCAATAATAAACAGACGCCGTGCAA
AACCAACCGCCGCCGTACGCGCATAGGCTCACTCTGTCACTCAC---------------------ACACATGGCTGCTGT
ACTGTACTGTACTGTTGGATGGATGGATAGATCGTGGACGCGTGGTAAACCAGTAACCATCACGCGCCAATCTTC-TCCT
CTCGTTCGAGATCACCCGGCCGTCCGAAATTAAGATGATTGAGATTTATCATGGATCGACC----GTCACTCTCTCCCCC
GTGCCTTCCCGACGAGCCCATCCAAAAAGAGCCGGCCGCAATGGCGAAAGGCGAAGCAACGAAGCCGGTGAGCGTGAGGG
G-CGACACTGACAGTGCAACCGCGAGCCGAGATCCGCGCAGATCGTGGCCGCTTTGCCCATGAATCGGATCACATGCAGA
CGCAGGCAGGCAAAACATGTGTGCTCCGGCCGGGGCCTACGTGATTACCCTGCTG------
>SNPs
--------S---SS------------S--------------S--------------S------------------S----
----S--------------------------S-S-S-S-SS-S----S-------S--S---S-----------------
------S-----S-------S--------S--S----------S-----------------------------S------
--------------------------S--S---------S--S------------S-----------------------S
---S---------S---------------------SS-----------------S-SSSS--SS-SS-SSSS---SSSSS
SSSSSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---SS----------------------------
-S-S-----S------S---------------------------------------------------------------
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-------------------------S------------------------------------------S-----------
--S----------S-----------------------------------S------------------------------
----S------------------------------------------------S--------------------------
---------------S-----------------------------S-------------S--------------------
-------S------------------------------------------------------------------------
--------S--------S-----------S--------------------------------------------------
S----S-----------------------------------------S--------------------------------
---SS--SSSSSS-------------------------------SS----------------------------------
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--------------------------------------------S-----------------------------------
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-------------------------S---------------S---S----------------------------------
-----------------SS-SS-SSSS------S----------------------------------------------
--------------------------S-------------------------SSS-------------------------
-------SSSS-------S---------------------------------------------------S---------
-------------------------------------S-------------S----SS-------------S----S---
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-S------------------------------------------------------------------------------
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------------SSSSSSSS---------------S----------S----S----------------------------
-----SS-----------------------------------S-SSS---------------------------------
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--------------------------------------------------S-----------------------------
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---S------------------------------S----------------------------------------S----
--S------------S------S------------S---------S---------------SSSS---------------
---------SSS---------------------------S-----------------S-SS-------------------
-S----S-------S------------------------------------------S----------------------
----------------S----------S----------S-----------------SSSSS
>forward_420
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CGTTAGGTGATACCGGCTCC------------------------------------------------------------
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>reverse_2232
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-----------------------------------------------------------------------GCTTTGTGT
TGGGGCATCTG---------------------------------------------------------------------
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