>input_sequence_73939
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----------------------ATGGCATCTCGCGACGCCGCCACCTTCCAGCTCTACCGGCCCATGGCAATGCCGACGG
CGACGCCCATGTCCCAGACGATGGCAATGCCCGGCTTCTCGTCGGCCGAGGCCGCGGACGACGCCGTGGTGGCGGTGCCG
GTGCCGGCGCCGAGAAAGGCCGGCGCGGCCAAGGGCGCCAAGGACCGGCACAGCAAGGTAAACGGGCGCGGGCGGCGCGT
GCGCATGCCGATCGTGTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCGGACGGGCAGACCGTGG
AGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTGGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCC
TCGGCGCCCTCCGCCGCCGCCGTCTCCCTCCTCGGGAAGCGGCCGCGCGAGGAGCACGAGCACGAGGCGGCGCCGTCCTT
CTGGGAGGCGCTGCAGGCCCGGCCCGTGCCCTGGGGCCTCTCCCCGTCGCTGGAGGCGCAGGCGTACGCGTCGTCGGTGG
CGCAGGGGCACCACCACCACCTGAACCTGCTCTCCGCGCTCTCCGGCGCCTCCAGGCGGCCAGAGGAGGAGTCCCGGTGA
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>chr2D_1_TraesCS2D01G372200
GTTTATCAGTCTCGCTGAATATCGGCTGAAAATGACCTGATCC----GTAGCTGGGTCTCCATCAGACCATCCCCATTTC
CAGGGTAACA--------GCATCCATGCAAGTCTTTTTTTT-TTCCTTTCTTTGCACACGGACGGTTTGCATGAGCTAGG
CATGACAAATGACAA----------------TTGAGAGGGCCTACCCGAAGCCAATGGAATGCAATGCGAATGCGAATGC
GGCATGACAATTTTTTTTGTAAACCTCGAAAGTTCT-TCTATGCAGATCAATGCTACAG--GCTTGAGCAAGGTGAGGTG
AGATAATA--------GAGCCGTCCATAGAGAGGAGAGAGCTACCGGACGAAGACCCCATGTGGCCTGCCCCCCAATGCC
TACAGTG-----------C---ACAGTGCTCCTGCTGCAGTGCTCCATGCCTGTCCCTGCACGGCTGCAGTGCTCCTGTC
CTCTGCACTGCACTGCACTTCAGACTTCTTGAGCCGAGTGCCCAAGT--GCTACATTCAGGTTTTCAGGGTCAGA-CTTC
AGATACCTCCATCTGTTTACGTACTTCCCAATAATTGCATATGGAGCTCCCCAAAAGCTGAAA-CCTCATGTTCAAACCC
GCAAA--AAAACCGGCCACCTCATGTTCAAGCTGGACTCA----TAATTTTCGTCACAATTACTTGTAAATTATTTTTCA
TCAGAGAGACATGTGT-----AACCAACAACTTCATACGTGCATTTTCGACATAGTCA------GCGTATTTTCCTCATG
CAGAGTCGAACACGTAAAGCAGCTTCATATGTGCATTTTTTTCTGACATGCACACTCA----------------------
--------------------------GAAATGTGTATGACTTTGTGGTACATACTTGTGACGTAT------CAGAGCCAG
AGGGCCTAAAAAGAATATACAAAGAAAATGCACATGAAACTCCA-G-CCCTTTATAAATTTGCACCCCACAGGGCCAGGG
ACCAAGCGGACAAGGCCCTATCCATCCATCCCCATCACCTCC-------CCACACACATCTGTGCGCCACCCGAACCAAA
GCTCAGCCACCAGC----AGCCATGGCATCTCGCGACGCCGCCACCTTCCAGCTCTACCGGCCCATGGCAATGCCGACGG
CGACGCCCATGTCCCAGACGATGGCAATGCCCGGCTTCTCGTCGGCCGAGGCCGCGGACGACGCCGTGGTGGCGGTGCCG
GTGCCGGCGCCGAGAAAGGCCGGCGCGGCCAAGGGCGCCAAGGACCGGCACAGCAAGGTAAACGGGCGCGGGCGGCGCGT
GCGCATGCCGATCGTGTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCGGACGGGCAGACCGTGG
AGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTGGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCC
TCGGCGCCCTCCGCCGCCGCCGTCTCCCTCCTCGGGAAGCGGCCGCGCGAGGAGCACGAGCACGAGGCGGCGCCGTCCTT
CTGGGAGGCGCTGCAGGCCCGGCCCGTGCCCTGGGGCCTCTCCCCGTCGCTGGAGGCGCAGGCGTACGCGTCGTCGGTGG
CGCAGGGGCACCACCACCACCTGAACCTGCTCTCCGCGCTCTCCGGCGCCTCCAGGCGGCCAGAGGAGGAGTCCCGGTGA
CCGCCGGCCCG---------------------CGCCTG-TCTACGTGATCGCATGCGCTGACCTGCCCGTGCCCTGCTGC
CTAATTCTTGGAGCCAAGCCAGCCAGGTGTTCCTGCTTGCT----TGCTGCTGTGTGGTGTGGCTTGCCCTGCGTACTTT
--------CGCATTTTCTTTACCGCCCTTTCTCCTTTGCGTGCATCGTGTGTTTTCTTTTGCGTGGTTTTTGGTCTGGGA
AGAAAGAATTAATCGAGAATCTGAGCAGCATCAGAGATTCCAAGGTAGCAACTGTAGATACAAGCCTGCTAG---ATCTT
ACCACCACT---CCATCTCGTCGGATTTGTGATTGTGCTTGTCACTAGTTGTTACAACAGTGTATTACGCCACTGCCAC-
----------TCCCTGCTGTCTGTGACGAGACGATTGATCTATCTAACACAGTGCCACTCTTGTACCACTCGATTGTTGT
TTTGCTTCAATGGAAG----TCCCTCTATCTGTGGGAAACGTTTTGCCGATGCAAAGGCTC---------------TGGT
GTGGTGTGGTGTGTGATTGGCATCTGCGGTAACCGTCCAACAATGATGGAACTAAATGACCCATTTGGCGCACCTCCATC
ACATTACG---------TACATGGCAGGGCTGCGCTTTGCTGCGAGACAATGATTTAGATTGATGTTTAGTAGATTTACT
TTAATCGTGGGTTCGCTTTTATCTCTGCAATACTGCTGCTGCTGGGGCAAAAGCTGCGGCTGCCGCTGCTGCTCTGC-AA
CGGCCTCTGCCACTTTGCCCTGATGAAAGGCTCCGGCTGTTTTCTCCGGCCATTATTGGTGCCAAGCTGTAGGCCATTTG
GCT----------GAAAGTGAGCTGCC----------CTACCTCACCTGACGGAATGCAGATCTCTGCACTCTGTCTGCA
CCCCCAACGGTTTACGTCGCCATGCTCGCAGATATTAAGTGCTCCATGTAAATTTCAAAAAAGAAGAGAGAAAAATAGCG
CTCCACGTTACAGAATACAGTTAGTGTATCCAGCATTCGACGCGGAGCATATTTTTGCTG
>chr2A_1
GTTTATCAGTCTCGCTGAATATCGGCTGAAAATGACCTGATCC----GTAGCTGGGTCTCCATCAGGCTATCGCCATTTC
CAGGGGAATAGCATCCATGCAACTATGCAAGTCTTTTTTTT-CCCCTTTCTTTGCATACGGACGCTTTGCATGAGCTAGG
CATGACAAATGACATTTCATGATTTCAGCATTTCAGAGGGCCTACCGGAAGCCAATGGAATGCAATGCGACACCA-----
--CAAAAAA------TTTGCAAACCTCGAAAGCTCTCTCTATGCAGATCAATGTTACAGAGGCTTGAGCAAGGTAAGATA
G---------ATAATAGAGCCGTCCGT--AGAGGCGAGAGCTACCGGACGAAGACCCCATGTGGCCTGCCCCCCAATGCC
TACAGTGCACAGTGCTGTCTGCACAGCGCTCCTGCTGCAGTGCTCCATGCCTGTTCCTGCACGGCCGCAGTGCTCCTGTC
CTCTCCACTGCACTGCA-----GACTTCTTGAG--------CCAAGT--GCTACATTCAGGTTTTCAGGGTCAGAACTTC
AGATACCTCCATCTGTTTACGTACTTCCCAATAATTGCATATGGAGCTCCCCAAAAGCTGAAAACCTCATCTTCAAACCC
GCAAA--AAA--------CCTCATGTTCAAGTTGGACTCACTCATAATTTTCGTCACAATTGCTTTTAAATTGTTTTTCA
TCATGTGAAT-----------------CAACTTCATATGTGCAATTTCGACAAAGTCAAAGTCTGTGTATTTTCCTCATG
CAGAGTCAAT---GTAAAGCAGCTTCATACGTGCATTTTTCTGACATCTACC----------------------------
----------------------CTCTGAAATGTGTATGCCTTTGTGGTACATACTTGTGACGTAT------C------AG
AGGGCATAAAAAGAATATACAAAGAAAATGAACGTGAAACCTGAGGCCCCTTTATAAATTTGCACTCCACTGGGTCAGGG
ACCAAGCGGACAAGGCCCTATCCATCCATCCATCCCCATCAGATCACCTCCCCACACATCTGTGCGCCACCCGAACGGAA
GCTCAGCCACCAGCAGCTAGCCATGGCATCTCGCGACGCCGCCACCTTCCAGCTCTACCGGCCCATGGCAATGCCGACGG
CCACGCCCATGTCCCAGACGATGGCAATGCCCGGCTTCTCGTCGGCCGAGGCCGCGGACGACGCCGTGGTGGCGGTGCCG
GTGCCGGCGCCGAGAAAGGCCGGCGCGGCCAAGGGCGCCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGT
GCGCATGCCGATCGTGTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCGGACGGGCAGACCGTGG
AGTGGCTGCTGCGGCAGGCCGAGCCGTCCATCCTGGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCC
TCCGCGCCCTCCACCGCCGCCGTCTCCCTCCTCGGGAAGCGGCCGCGCGAGGAGCACGAGCACGAGGCGGCGCCGTCCTT
CTGGGAGGCGCTGCAGGCCCGGCCCGTGCCCTGGGGCCTCTCCCCGTCGCTGGAGGCGCAGGCGTACGCGTCGTCGGTGG
CGCAGGGGCACCACCACCACCTGAACCTGCTCTCCGCGCTCTCCGGCGCCTCCAGGCGGCCAGAGGAGGAGTCCCGGTGA
CCGCCGC-------------CGCGGAGCCGCTCGCCTG-TCTACGTGATCGCATGCGCTAGCTGACCGCCCG-----TGG
CTAATTCTTGGAGTCAGCTGTTCTTGTTGCT--------------------------GTGTGGCTTGCCCTACGTACTTT
--------CTTTTGCTT--------CCTTTCTCCTTTGCGTGCACCGTGTGTTTTCTTTTGCGTGGTTTTTGGTCCGGGA
AGAAAGAATTAATCGAGAATCTGAGCAGCATCAGAGATTCCAAGGTAGCAACTGTAGATACAAGCCTGTTATGCTAGATC
TT-ACCACCGCTCCATCTCGTCGGATTTGTGATTGTGCTTGTCACTAGTTGTTACTACAGTGTATTACGCCACTGCCAC-
----------TCCCTGCTGTCTGTGAGT-GACGATTGATCTATCTAACACAGTGCCACTCTTGTACCACTCGATTGTTGT
TTTGCTTCAATGGAAGCCTCTCCCTCTATCTGTAGGAATCGTTTTGCCGATGCAAAGGCTCTCTATCTATCTGGTGTGGT
GTG------------TCTGGCATCTGCGGTAACTGTCGAGCAATGATGGAACGAGATGACCCATTTGGCGCACGGCCATC
ACACTACGTAGTACTACTACATGGCAGGGCTGCGCTTTGCTGCGAGACAATGATCTAGATTGATGTTTAGCAGATTTACT
TTAATCGTGGGTTCGCTTTTATCTCTGCGATACTGCTGCTGCTGGGGCAAAAGCTGCCGCTGCCGCCGCTGCTCTGCTAA
CGGCCTCTGCCACTTTGCCCTGATGAAAGGCTCGGGCTGTTTTCTCCGGCCATTATTGGTGCCAAGCTGTAGGCCATTTG
GCT----------GAAAGAGAGCTGCC----------CTACCTCACCTGACGGAATGCAGATCTCTGCACTCTGTCTGCA
CCCCCAACGGTTCACGTTGCCATGCTCGCAGATA----------------------------------------------
------------------------------------------------------------
>chr2B_1
GTTTATCAGTCTTGCTGAATATCGGCTGAAAATGACCTGCTGTGTATGTAGCTGGGTCTCCATCAGACCATCGCCATTTC
CAGGGTAACA--------GCATCCATGCAAGTCTTTTTTTTTTTCCTTTCTTTGCATACGGACGCTTTGCATGAGCTAGG
CATGACAAATGACG----------------TTTCAGAGGGGCTACTCGAAGCCAATGGAATGCAATGCGAATGCGGCATG
ACCAAGAAA------ATTGTAAACCTCGAGAGTTCT-TCTATGCAGATCAATGTTACAG--GCTTGAGCAAGGTGAGGTG
AGATAATATCATAATAGAGCCGTCCGT--AGAGGCGAGAGCTACCGGACGAAGACCCCATGTGGGCTGCCCCCCAATGCC
TACAGTG-----------CTGCACAGCGCTCCTGCTGCAGTGCTCCATGC-TGTCCCTGCACGGCTGCAGTGCTCCTGTC
CTCTGCACTGCACTGCACTTCAGATTTCTTGAGCCAAGTGCCCAAGTGCGCTACATTCAGGTTTTCAGGGTCAGA-CTTC
AGATACCTCCATCTGTTTACGTACTTCCCAATAATTGCATATGGAGCTCCCCAAAAGCTGAAA-CCTCATGTTCAAACTC
GCAAAGGAAAACCGGCCACCTCATGTTCAAGCTGGAATCA----TAATTTTCGTCACAATTCCTTGCAAATTATTTTTCA
TCAGAGAGACATGTGTAACCAAACCAACAACTTCATACGTGCATTTCCGACAAAGTCA------GTGTATTTTCCTCATG
CAGAGTCGAACATGT-----AGCTTCATATGTGCATTTTTTTCTGACATGCACACTCAGAAATGTGTATGACTCATATGC
GCATTTTTTTCTGACATGCACACTCAGAAATGTGTATGACTTTGTTGTACATGCTTGTGACGTTTCAGAGCC------AG
AGGGCATAAAAAGAATATACAAAGAAAACGCACATGAAACTCCA-GCCCCTTTATAAATTTGCACCCCACAGGGTCAGGG
ACCAAGCGGACAAGGCCCTATCCATCCATCCATCCCCATCAGATCACCTCCCCACACATCTGTGCGCCACCCGAACGAAA
GCTAAGCCACCAGC----AGCCATGGCATCTCGCGACGCCGCCACCTTCCAGCTCTACCGGCCCATGGCAATGCCGACGG
CGACGCTCATGCCCCAGACGATGGCAATGCCCGGCTTCTCGTCGGCCGAGGCCGCGGACGACGCCGTGGTGAGA------
GTGCCGGCGCCGAGAACGGCGGGGGCGGCGAAGGGCGCCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGT
GCGCATGCCGATCGTGTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCGGACGGGCAGACCGTGG
AGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTGGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCC
TCCGCGCCCTCCACCGCCGCCGTCTCCCTCCTCGGGAAGCGGCCGCGCGAGGACCACGAGCACGAGGCGGCGCCGTCGTT
CTGGGAGGCGCTGCAGGCCCGGCCCGTACCCTGGGGCCTCTCCCCGTCGCTGGAGGCGCAGGCGTACGCGTCGTCGGTGG
CGCAGGGGCACCACCACCACCTGAACCTGCTCTCCGCGCTCTCCGGCGCCTCCAGGCGGCCAGAGGAGGAGTCCCGGTGA
CCGACCGCCGCTGCAGCTAGCGCCGAGCCGCGCGCGCTCTCTACGTGATCGCATGCGCTGACCTGCCAGTGCCCTGCTGC
CTAATTCTTGGAGCCAAGCTAGCCAGGTGTTCCTGCTTGCTTGCCTGCTGCTGTGTGGTGTGGCTTGCCCTACGTACTTT
ATCATTTTCTTTTGCTT--------CCTTTCTCCTTTGCGTGCACCGTGTGTTTTCTTTTGCGTGGTTTTTGGTCTGGGA
AGAAAGAATG----GAGAATCTGGGCAGCATCAGAGATTCCAAGGTAGCAACTGTAGATACAAGCCTGCTAG---AGATC
TT-ACCACC---CCATCTCGTCGGATTTGTGATTGTGCTTGTCACTAGTTATTACTACAGTGTATTACGCCACTGCCACG
GCTCTGCCATTCCCTGCTGTCTGTGACGAGTCGATTGATCTATCTAACACAGTGCCACTCTTGTACCACTCGATTGTTGT
TTTGCGTCAATGGAAG----TCCCTCTATCTGTAGGAATCGTTTTGCCGATGCAAAGGCTC---------------TGGT
GTG------------ATTGACATCTGCGGTAACTGTCGAACAATGATGGAACGAGATGACCCATTTGGCGCACTGCCATC
ACATTACGTACG-----TACATGGCAGGGCTGCGCTTTGCTGCGGAAGAATGATTTAGC-TGATGTTTAGTAGATTTACT
TTAATCGTGGGTTCGCTTTTATCCCTGCAATA---CTGCTGCTGGGGCAAAAGCTGCCGCT------------CTGCTAA
CGGCCTCTGCCACTTTGCCCTGATGAAAGGCTCCGGCTGTGTTCTCCGGCCATTATTGGTGCCAAGCTGTAGGCCATTTG
GCTGGCTGGGCAGGAAAGAGAGCTGCCCTGCCCTACCCTACCTCACCTGACGGAATGCAGATCTCTGCACTCTGTCTACA
CCCCCAACGGTTTACGTTGCCATGCTCGCAGATATTAAGTGCTCCACGTAAATTTCAA----------------------
------------------------------------------------------------
>SNPs
------------------------------------------------------------------------S-------
--------------------------------------------------------S-------S---------------
--------------S------------------S-----------------------------------------SSSSS
SS--S--S-SSSSSS--------------------------------------S--------------------------
-------------------------S-SS-----S---------------------------------------------
--------------------------S-----------------------------------------------------
-----------------------------------S--------------------------------------------
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-------------------------------------------------------------S------------------
----------------------------------------------------S------------S--------------
------------S-------------------------------------------------------------------
------------------------------------------------------------------------SSSSSS--
-----S--------------------------------------------------------------------S-----
-------------------------------SSSS-SSSSSS---------S------------------------S---
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-----------------------------------------------------------S--------------------
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--S---------S-------------------------------------------------------------------
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---------SS--------------------------------------------------------S------------
-------------------S---------------------------------------------------S--------
---------SSS-SS-SSSSSSSSS-------------------S-----------------------------------
----------------------------------------------------------------------------SS-S
SSS-----S----------------------------------------------S------------------------
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---------------------------------S----S-----------------------------------------
---SSSSSSSSSSSS------------------S---S--------------S-S------------------SS-----
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---------------------------------------------------------S--------S-------------
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------------------S-------------------------------------------------------------
-----------------S----------------------------S-----------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1080
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--------------------TCCATCCATCCCCATCACCT----------------------------------------
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>reverse_2328
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-------GGTGTGTGATTGGCATCTGC-----------------------------------------------------
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