>input_sequence_73936
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-------------------------------------------------------------------------------A
TGCACTTCTTCTCGGGCCGGAGCAAGCTGCGGCAGAAGAGCGGCGGCGGCAAGAACCAGGCCGATGCCTCCACGGCGGCG
AAGGCCAAGCACAAGGACGGCAGGTGCCGCGCTCTGTGCTGCGGCGCGTCGCGGCTCAGCGTGTCTTCGTCCGCGTCCTG
CTCGTCCCTGGACGCGCCGGACACGACGCGCGGCCGCATGTCGGACATCGCCCACGGCATGGTCGAGGCGAGGCTGCAGT
CCATGGGCGACGCCGCCTCCGTCGACGGCCGGTCGTCGGCGACG---CGCCGCGGGACGGAGCCCGCCGACCAGCGCCGT
CGCTGGCCGTGCGTCTGCTCCTGCGCCAGCGGCGGC------GGCTGCTACGAGAGGGGCGCGCCCAGGCCCCGGGAGAG
GAAGCCGTGCGTCGTGCTGGTGGCCGTGGACAGGAGGACCTACGAGCCCCGGGAGGAGTTCCGCCGGTCCATCGCCGAGG
TGATCGCGGCGAAGCGGATGGCCGAGCCGGCGGAGCTGCGGGCGCTGCTCAACTGCTACGTGTCCGTGAACGCGCGCGAG
CACCGCGCCGCCATCCTCGACGCCTTCCACGAGGTGTGCACCGGCCTGTTCGCTTGCAAGGGTTGA--------------
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>chr2D_1_TraesCS2D01G313900
AGACACCGAGCAAGCTGGCTGTGGCTGCCTACTCCATGGGTGGT---TGGCGAAGCGACAGAGCACCACACGCGAACACT
CCACCAGCTTGCTCCTCTAGCCGCTTGCCGAAAAAGGAAACAGGAAAAGA-----------AACCGACGGAAAAGCAGAG
GGGCGAGCTTGCTAAAGCTGTTGACCGCTGCTTGATTGAATGATTGGCACGGTGGCCGGCCAGCCACATGACGGCCACTA
CACCAGCCCGTTCTAGCTTTGC----TTCTTTAGCTTCCCCTGTCTCCTC---TTTAATTAGCCAGAAGTCGGATTAGG-
--GGGAGTGCTAATCAAGATTTTGGGGATTTCAAACACGTGTCACT------ACATATGCTCCCAAGCTCAACCTCTGAA
GCAGAGGCTAGCAGTGCTCTGCACA--------------------------------GCTG--------------GAAGT
GAAACAACAACAACTCATTCCAA-GGGAAGTGATGAATATGATCTAGAGTTCTACTCCTAGATTCCAAGGGAAGTGAAGA
TTAGTATGATCTAGACCTCTAGATTCATCCGAGGACAGCGTGTGCTGGCTG----CTGTAATTATGGCATAAGTAGAGAG
TAGGTTTCACGTAATGGCGACCAGGGACGATCATTGACGCCTACAATTTTATAAGCGGCTAA--TCACGTTTACGATTTG
ACAAGTGAGCTGATCCTGATTAAGAATGCCGTGGCTAAAGAGAAAGCAGTGTGTTGGAGATGCCAAGTTGCTGCTGGTTA
GGGGACAGCATCATCCTGCTACATCCTAAAGCTTAAGCTATGGAGCTTAATCAGCTTCTCTACTTACCCTCCTCCTTTTC
CGAGGCTTAAAAAAATGCTTAATCACAAAACCAAAAGGCGGCGCCTTTGATCGCTTTACAACCGCCCACGGTCCTCTTGT
AGTTG--------CAGTGCCCATGCATCTTACTACTTACTACTACTACTACCCTTACCTGTGGGCTCAATTGCGCATTGT
C----CTCTTGCAGTTGCACGACAAGACAACGTAGCAGAGCAGAGCGCGGCGG------------------------CGA
TGCACTTCTTCTCGGGCCGGAGCAAGCTGCGGCAGAAGAGCGGCGGCGGCAAGAACCAGGCCGATGCCTCCACGGCGGCG
AAGGCCAAGCACAAGGACGGCAGGTGCCGCGCTCTGTGCTGCGGCGCGTCGCGGCTCAGCGTGTCTTCGTCCGCGTCCTG
CTCGTCCCTGGACGCGCCGGACACGACGCGCGGCCGCATGTCGGACATCGCCCACGGCATGGTCGAGGCGAGGCTGCAGT
CCATGGGCGACGCCGCCTCCGTCGACGGCCGGTCGTCGGCGACG---CGCCGCGGGACGGAGCCCGCCGACCAGCGCCGT
CGCTGGCCGTGCGTCTGCTCCTGCGCCAGCGGCGGC------GGCTGCTACGAGAGGGGCGCGCCCAGGCCCCGGGAGAG
GAAGCCGTGCGTCGTGCTGGTGGCCGTGGACAGGAGGACCTACGAGCCCCGGGAGGAGTTCCGCCGGTCCATCGCCGAGG
TGATCGCGGCGAAGCGGATGGCCGAGCCGGCGGAGCTGCGGGCGCTGCTCAACTGCTACGTGTCCGTGAACGCGCGCGAG
CACCGCGCCGCCATCCTCGACGCCTTCCACGAGGTGTGCACCGGCCTGTTCGCTTGCAAGGGTTGAAGAGGCCTACTGTC
GTC-------CATGTCCGCATGTGCACCTGTCGTGCTCTCGCAGCCTCGCAACGGGGAAGTGTGATTGTATTAGCGTGAT
AAGTTAATTTTTGTTCAAACAGTGTTGCTCAGCACTGCTGTAATAATGTGCTCAAGCCTCAGGCATAGTGCGCCTATCTT
GGGCAATTTACATTGTGTATATATTTCGCTGTTTGTTATGTTGATATCT--GAACGTATCCCCAGTTCAGATGTGGATTT
CACAATAAGTGA-TGCAAGGTCAACATTGAGTTATGCCGGCATACACATCCATGAATACACGACCTAGCATTAATAATTT
ACTAGTGGTTGGGGCGCCACTTAAAAGAAAGTTTTGCGCACGTTTCCATTTAAAAAAATACATAAAGTCCTCGCCTTCGT
CTAAAAAAACTTCTCAAAAAAAAATCCTCATCTTCATCTAAAAAAAGTAAAAAAAAAATTTACCACCACAGCCGACCAGT
GAGTGCAACTTTGGATAACCCTCATTTAAAAAATACCAAAGGTCCTCCTCTCCATCGAAAAAAATACATTTAAAAAATAA
TCCACACCTTCATCTAAACAAAATTACAAAAGATTTCTCACCGCGGCCAACCAGCTTGCGTCACATGGCATAGTTGGTTG
GCCACCCTTCGCGCGTAGCTTAATAGGTTTAACTAGTGATTGGGGCACCACCTTGTGGCGCCCCTTGAGATGAAGCTGTG
CGCACATTTCTATTGAAAAAATACATAGAGTCCTCGAGTCTTCGCCTCCATCGAAAAAACATATAAAAAAACCTCACCTT
TATCTAAAAAAAAGAATACCACAACAGCCTACCAGCGAGTGCCACTTTGCATAACCCTCCATTTAAAATATACCAGAGGT
CCTCTTCTTCATCTAAAAAGAAATACATTTAAAAAATAATCCATATCTTCATCTAAAAAAATTTGTAAAAGATTTCTCAC
CGCGGCCAACCAGCTTGCGCCACGTAGCATAGCTGG
>chr2B_1
AGACACCAAGCAACCAAGC--TGGCTGCCTACTCCATGGGTGGTGGTTGGCGAAGCGACAGAGCACCACACGCGAACACT
CTACCAGCTTGCTCCTCTAGCCGCTTGCCGAAAAAGGAAACAGGAAAAGAGAATGGAAAGAAACCGACGGAAAAGCAGAG
GGGGGTGCTTGCTAAAGCTGTTGACCGCTGCTTGATTGAATGATTGGCCG------------GCCACATGACGGCCACTA
CACCAGCCCGTTCTAGCTTTGCTAGCTTCTTTAGCTTCCTCTGTCTCCTCATCTTTAATTAATCTGGAGTCGGATTAGGT
TAGGGGGTGCTAATCTAGATTTTGGGGATTTCAAACACGTGTCACT------ATATATGCTCCCAAGCTCAAGCTCTGAA
GCATAGGCTAGCAGTGCTCTGCACA--------------------------------GCTGCACTCTGGCAGCTGGATGT
GTAACAACAACAACTCATTCCAAGGGGAAGTGATGAATATGATCTAGAGTTCTAG---TAGACTCCAAGGGAAGTGAAGA
TTAGTATGATCTAGGCTTCTAGATTCATCCGAGGACGGCGTGTGCT----G----CTGTAATTATGACATA-------AG
TAGGTTTCACGTAATGGCGACTATGGACGATCATTGACGCCTATAATTTTATAAGCGGCCATTTTCACGTTTACGATTTG
ACAG----------CCTGATTAAGAATGCCGTGGCTAAAGAGAAAGCAGTGTGTTGGAGATGCCAAGTTGCTGCTGGTTA
GGGGACAGCATGATCCTGCTACATCCTAAAGCTTAAGCTATGGAGCTTAATCAGCTACTCTACTTACACTCCTCCTTTTC
CGAGGCTTAAAAATTTGCTTAATCACGAAACCAAAAGGCGGCGCCTTTGATCGCTTTACAACCGCGCACGGTCCTC----
--TTG--------CAGCGCCCATGCATCTTACTACT-------------ACCCTTACCCGTTCGCCCAATTGTGCATTGT
C----CTCTTGCAGTTGCACGGCAAGACAACGTAGCAGAGCAGAGCGCGGCGGC-ACGGAGGAAGGACAGAGAGCGGCGA
TGCACTTCTTCTCGGGCCGGAGCAAGCTGCGGCAGAAGAATGGCGGCGGCAAGAACCAGGCCGATGCCAGCGCGGCGCCC
AAGGCGAAGCACAAGGACGGCAGGTGCCGCGCGCTGTGCTGCGGCGCGTCGCGGCTCAGCGTGTCCTCCTCGGCGTCCTG
CTCGTCCCTGGACGCGCCGGACACGACGCGCGGCCGCATGTCGGACATCGCCCACGGCATGGTCCAGGCGAGGCTGCACT
CCATGGTCGACGCCGCCTCCGCCGACGGCCGGTCGTCGGCGACG---CGCCGCGGGACGGAGCTCGCTGATCAGCGCCGT
CGCTGGCCGTGCGTCTGCTCCTGCGCCAGCGGCGGCGGCGGCGGCTGCTACGAGAAGAGCGCGCCCAGGCCCAGGGAGAG
GAAGCCGTGCGTCGTGCTGGTGGCCGTGGACAGGAGGACTTACGAGCCCCGGGAGGAGTTCCGCCGGTCCATCGCGGAGG
TGATCGCGGCGAAGCGGATGGCCGAGCCCGCGGAGCTGCGGGCGCTGCTCAACTGCTACGTGTCCGTGAACGCGCGCGAG
CACCGCGCCGCCATCCTCGACGCCTTCCACGAGGTGTGCACCGGCCTGTTCGCTTGCAAGGGCTGAAGAGGCGTACCGGC
GGCGTCCATGCTTGTGCGTGTGCGCATCTGTCGTGCTCTCGCAGCCTCGCAACGGGGAAGTGTGATGGTATTGGCGTGAT
AAGTTAATTTTTGTTCAAACAGTGTTGCTCAGCACTGCTGTAATAATGTGCCCAAGCCTCAGGCATAGTGTGCCTATCTT
GGGCAATTTTCGTCGTGTATATATTTCGCTGTTTGTTATGTTGATATATCCGAACCTATCCTCAGTTCAGATGTGGATTT
CAGAATAAGTTAGTGCAAGGTCAGCATTGAGTT-----------------------------------------------
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>chr2A_1
AGACACCAAGCAACCAAGC--TGGCTGCCCACTCCATC---GGTGGTTGGCGAGGCGACAGAGCACCACACGCCAACACT
CTACCAGCTTGCTCCTCTAGCCGCTTGCCGAAAAAGGAAACAGGAAAAGAGAATGGCAAGAAACCGACGGAAAAGCAGAC
GGGGGAGCTTGCTAAAGCTGTTGACCGCTGCTTGATTGAATGATTGGCCG------------GCCACATGACGGCCACTA
CACCAGCCCGTTCTAGCTTTGCTAGCTTCTTTAGCTTCCTCTGTCTCCCCATCTTTAACTAATCTGGACTCGGATTAGGC
TAGGGGGTGCTAATCTAGATTTTGGGGATTTCAAACACGTGTCACTATATATATATATGCTCCCAAGCTCAACCTCTGA-
GCAGAGGCAAACAATGCTCTCGAAACAGGCTTTCACCCCGTTTTATACATGAGGCAGGCAGTGCTCTGGAAGTTGGAAGT
GAAAGATCAACACATTCCCAAGGGAGGT--------------------------------------------------GA
TGAATATGATCTAGACTTCTAGATTCATCCGAGGACGGCGTGTGCT----GGCTGCTGTAATTATGGCATA-------AG
TAGGTTTCACGTAATGGCGACCAGGGACGATCATTGACGCTTACAATTTTATAAGCGGCTAA--TCACGTTTATGATTTG
ACAAGTGAGCTGATCCTGATTAAGAATGCCGTGGCTAAAGAGAAAGCGGTGTGTTGGAGATGCCAAGTTGCTGCTGGTTA
GGGGACAGCATGATCCTGCTACATCCTAAAGCTTAAGCTATGGAGCTTAATCAGCTGCTCTACTTACCCTCCTCCTTTTC
CGAGGCTTAAAAATG-GCTTAATCACGACACCAAAAGGCGGCGCCTTTGATCGCTTTACAACCGCGCACGGTCCTCTTGT
AGTTG--------CAGTGCCCATGCATCTTACTA----CTACTACTACTACCCTTGCCCGTTGGCTCAATTGCGCATTGT
CTGTCCTCTTGCGGTTGCACGACAGGACAACGTAGCAGAGCAGAGCGCGGCGGGAACGGAGGAAGGGCGGGGAGCGGCGA
TGCACTTCTTCTCGGGCCGGAGCAAGCCGCGGCAGAAGAACGCCGGCGGCAAGAACCAGGCCGATGCCTCCACGGCGGCG
AAGGCCAAGCACAAGGACGGCAGGTGCCGCGCGCTGTGCTGCGGCGCGTCGCGGCTCAGCGTGTCCTCCTCGGCGTCCTG
CTCGTCCCTGGACGCGCTGGACACGACGCGCGGCCGCATGTCGGACATCGCCCACGGCATGGTCCAGGCGAGGCTGCACT
CCATGGCCGACGCCGCCTCCGCCGACGGCCGGTCGTCGGCGACGACGCGCCGCGGGACGGAGCCCGCCGACCAGCACCGT
CGCTGGCCGTGCGTCTGCTCCTGCGCCAGCGGCGGC---GGCGGCTGCCACGAGAGGAGCGCGCCCAGGCCCCGCGAGAG
GAAGCCGTGCGTCGTGCTGGTGGCCGTGGACAGGAGGACGTACGAGCCCCGGGAGGAGTTCCGCCGGTCCATCGCGGAGG
TGATCGCGGCGAAGCGGATGGCCGAGCCGGCGGAGCTGCGGGCGCTGCTCAACTGCTACGTGTCCGTGAACGCGCGCGAG
CACCGCGCCGCCATCCTCGACGCCTTCCACGAGGTGTGCACCGGCCTGTTCGCTTGCAAGGGTTGAAGAGGCGTACTGTC
GTC-------CATGTCCGCGTGTGCATCTCTCGTACTCTCGCAGCCTCGCAACGGGGAAGTGTGATGGTTAATTTTGT--
-------------TTCAAACAGTGTTGCTCAGCACTGCTGTAATAATGTGCTCAAGCCTCAGGCATAGTGCGCCTATCTT
GGGCAAGTTACGTCTTGTATATATTTCGCTGCTTGTTATGTTG--ATATCCGAACCTATCCTCAGTTCAGATGTGGATTT
CAGAATAAGTTAGTGCAAGGTCAACATTGAGTT-----------------------------------------------
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>chr2B_466
TTTCAA--------------------------------------------------------------------------
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----------------------GGAAGT--------------------------------------------------GA
TGAATATGATCTAGCTTTCTAGATTCATCCGAGGACAGCGTGTGCT--------GCTGTAATTATGGCATA-------AG
TAGGTTTCACGTAATGGCGACTAGGGACGATCATTGGCATCTACCATTTTATAAGAGGCTA-TTTCACGTTTACGATTTG
ACATGCTGAATTG--ATGATTAAGAATGCCCTAGCTAAAGACAAAGTAGTGTGTTGGAGATGCCAAGTTGCTGCTGGTTA
GGGGATAGCATGATCCTGCTACATCCTAAAGCTTAAGCTATGGAGCTTAATCAGCTACTCTACTTACCCTCCTCCTTTTC
CGAGGCTTAAAAATTTGCTTAATCACGAAACCAAAAGGCGGCGCCTTTGATCGCTTTAGAACCGCGCATGGTCCTC----
--TTGTATTTTTGCAGTACCCATGCATCT----------TACTACTACTACCCTTGCCCGTTGGCTCAATTGCGCATT-T
C----CTCTTGCAGTTGCACTGCAAGACAACGTAGCAGAGCAGAGCGCGGCGGC-ACGGAGGAAGGATAGAGAGCGGTGA
TGCACTTCTTCTCGGGCCGGAGCAAGTTGCGGCAGAAGAACAGCGGCGGCAAGAACCAGGCCGATGCCAGCGCGGCACCC
AAGGCAAAGCACAAGGACGGCAGGTGCCGCGTGCTATGCAGCGATGCGTCGCGGCTCAGCGTGTCCTCCTCGGTGTCCTG
CTCATCCCTGGACGCGCCGGAGACAATGTGCGGCCGCATGTCCGATATCGCCCATGGGATGGTCCAGGCGAGGCTGCACT
CCATGGTCGAAGCC------------------------------------------------------------------
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>chr4B_469
---CAA--------------------------------------------------------------------------
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----------------------GGAAGT--------------------------------------------------GA
TGAATATGATCTAGCTTTCTAGATTCATCCGAGGACACTGTGTA--------CTGCTGTAATTATGGCATA-------AG
TAGGTTTCACGTAATGGCGACCAGGGACGATCATTGGCGTCTACAATTTTATAAGCGGCTA-TTTCACGTTTACGATTTG
ACATGCTGAATTG--CTGATTAAGAATGCCCTAGCTAAAGAGAAAGCAGTGTGTTGGAGATGTCAAGTTGCTGCTGGTTA
GGGGATAGCATGATCCTGCTACATCCTAAAGCATAAGCTATGGAGCTTAATCAGCTACTCTACTTACCCTCCTCCTTTTC
CGAGGCTTAAAAACTTGCTTAATCACGAAACCGAAAGGCGGCGCCTTTGATCGCTTTACAACTGCGCACGCCCCTC----
--TTGTAGTTTTGTAGTGCCCATGCATCT----------TACTACTACTACCCTTGCCCGTTGGCTCAATTGCGCACTGT
C----CTCTTGCAGTTGCACGGCAAGACAACATAGCAGAGCAGAGCGCGGCGGC-ACGGAGGAAGGACAGAGAGCGGCGA
TGCACTTCTTCTCAGGCCGGAGCAAGCTGCGTTAGAAGAATGGCGGCGGCAAGAACCAGGCCGATGCCAACGCGGCGCCC
AAGGCAAAGCACAAGGACGGCAGGTGCCGCGCACTATGCTGCGGCGCCTCACGGCTTAGCGTGTCCTCCTCGGTGTCCTG
CCCGTCCCTGGACGCGCCGGAGACAACACGCGGCCGCATGTCGGACATCGCCCACGGGATTGTCTAGGCGAGGCTGCACT
CCATGGTCGAAGCC------------------------------------------------------------------
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>SNPs
-------S-----S-SS--SS-----------------------------------------------------------
-S------------------------------------------------------------------------------
---S--------------------------------------------SSSSSSSSSSSSSS------------------
---------------------------------------S---------------------SS-S-S-------------
-----S---------S-------------------------------------S--------------------------
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------------------------------------------------------SSSS----S-----------------
----------------S-----------------------------SSSS---------------------SSSSSSS--
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-----------S--------------------------------------------S-----------------------
-------------SS-----------S--------------------------------------S--------------
------------------------------------SS--------------------S--S------------------
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---------------------------------------S----------------------------------------
--------------------------------S--------------------------------S--S--S--------
----------------------------------------------------------------S-------------S-
------S--------------S----------------------------------------------------------
---------------------------------------------------------S----------------------
---------------------------------------S-----------------------------------S----
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------------------------------------------------------------------------S-------
-------------------S------S---------------------------------------S-----S-------
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-----------S-S---------------------------------S-------S-----S------------------
--S-------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_946
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----------------------------------------------TTGATCGCTTTACAACCGCC--------------
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>reverse_2374
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-----------------------------------------------------GCTTGCGTCACATGGCATAG-------
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