>input_sequence_73920
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--------------------------------------------------------ATGGCAATAATGTCGCCGACCTCC
ATCTTCTTCTCTGTGATCGTCTTCATGCTCCTTTCCAATGCCATTACTACTCAAGCCGGTGGCTCTGGCAGTGGAAAACC
TAAGGCAACAAGCCTCATAGTGGAAGCGTGCAAGAACGCTTCGGGTGAGACCCAAGACCCCGATGTCACAAAGGAATTCT
GTTTGTCGACCCTCCAATCGGACAAGCGGAGTGCCGAGGCTAAAGACCTCCCTGGCTTGGTGCTCGTCTCCATCGACATC
CTTAAGGGCCGTGTCACTGATGCTAGTGTCAAGGTCAAGAAAATGCTACAAAACGCAAAAAAAAGGCACACTGGTGATGT
ACGCTCTCAGTATTTGTGAGCTGCAATATGAGAACGTGGTGAGCACGCTCAACATCTGCCAAGCCATGATTAAGGATCAC
CAAGGTGACAAGGGCATCCTGCACTCCTTGCGTCTGCCCCACTGTGTGGATATCGCCGGCGACACTTCCGACGAGTGCCA
AACTGATCTTGAAGATGTGCCAGGGACGGAGGCGCTGCAAACTGATAACGAGAGGCTGCGCATTCTGTTCAACCTCAACA
CCGCCTTGGTTGTACCATATGATGTCCGTGATTAG---------------------------------------------
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>chr7B_1_TraesCS7B01G001900
CTATGTCACATTAATGAATCTATGGATGAGATCCATGTTAGATGTTAGATGTTGTGTTGCATTAATGAATCTATGGATGA
TATCCATCTTGGATATCCATGATCAAGTTGTGTTGCATCAATGAGTCTATAGATGTTATATGTGTTACTATGTGAAGATC
TAAAATAAGTATATGTGTATTTGTGGAACACAGTGAGCATTAATACGATGAGATCCAAAATGAGCATTGATATATCCTTG
TGCATTCTACGGACACTCATCATCTGGATATCCATTATCAAGCTATATTTCATTAAGAGCAGTGCTATACACACGATAGT
GTGCAGACGATGTGTGCACGACAATGCAATCAGCTCCGTCCATTGCATGGCAACAGTAGGCAGCAGGCCGCTAGATGCTT
ATCGTGCAGTGGTCGTGCACATATTTGTCATCTGCAAAGTGGTTCCGTTTCACTAATGAATCTATGGATGAGATCCATAT
TAGATATCCATCTTCAAGTTATGTTGCATTAATGAGTCTATA----GATGTTAGATGTGTTACTATGAGAAGATCTAAAA
TGAGCATTTGTGTATTTGTGGAACATAGAGAGCATTAACCTGATGAGATACAAAATGAGCACCAGTATATCCTTGTGCAT
TCTACGGACACTCATCATTTGGATATCCATGATCAAGCTATGTTACATTAAAGAATCTATGGAAGCAACATGTGTATTAA
TAAAAGTAAAATCTGAAATGTGCATCAATTGTATTTATGAATATAAAGGGCATTATTAGCCGGAGGTGCAAAATGTGCAC
AGACTGGACACTAATTAATATGCGTATCCATGATCAAGCGGCATACTTCATTTATGAATTCTCACTGCACGCACTATAAA
TAAAACTCAACCTCACGAACACCTCCATCCATCCAT----CCATCTCTACAATACACACCCTTCTCTATCCATTTCACTC
TATCTCCCTCTGCTTAAGGACAGTTCAAGG---GTAT-----CTAGCCTTCTAACAATGGCAATAATGTCGCCGACCTCC
ATCTTCTTCTCTGTGATCGTCTTCATGCTCCTTTCCAATGCCATTACTACTCAAGCCGGTGGCTCTGGCAGTGGAAAACC
TAAGGCAACAAGCCTCATAGTGGAAGCGTGCAAGAACGCTTCGGGTGAGACCCAAGACCCCGATGTCACAAAGGAATTCT
GTTTGTCGACCCTCCAATCGGACAAGCGGAGTGCCGAGGCTAAAGACCTCCCTGGCTTGGTGCTCGTCTCCATCGACATC
CTTAAGGGCCGTGTCACTGATGCTAGTGTCAAGGTCAAGAAAATGCTACAAAACGCAAAAAAAAGGCACACTGGTGATGT
ACGCTCTCAGTATTTGTGAGCTGCAATATGAGAACGTGGTGAGCACGCTCAACATCTGCCAAGCCATGATTAAGGATCAC
CAAGGTGACAAGGGCATCCTGCACTCCTTGCGTCTGCCCCACTGTGTGGATATCGCCGGCGACACTTCCGACGAGTGCCA
AACTGATCTTGAAGATGTGCCAGGGACGGAGGCGCTGCAAACTGATAACGAGAGGCTGCGCATTCTGTTCAACCTCAACA
CCGCCTTGGTTGTACCATATGATGTCCGTGATTAGATTAGTATAATGATTGTTTTTTATCTGCGAGAAAGGATAATAAAT
TTGAAATAA-TAATCATAAAATTTGCTGTGGCATAAATTTTACTCATTTTTGTCTTATGGTATATACCCATGGATGGTTA
TGATTATCCACACAATATTAATCACGGACAGAAATGAGTAAGCCAGAATGTTAGTA---CTATTTGGATAAAGAATATAT
ACCTCTGGCACGTCTACACAATATATATATGCTATCTTTGAATATGATGAAGATAAAAGGAACTTGACGTGCAGAGCAAG
GCGGGCATTGTCGGCCGAAATCACTGTTCTGACCTTTTTAGCAATCTTTGTCACAAAATGAACTTGACATGAAAGTATTT
CACGATCTGA-C-CTTTTAGCAACGCCACAGTTCATGGCGTTTCTTCTCCATATAAAAACGCCAAAATAGCTCGCGTTTC
AGCTCCACCTTCAAACGCCAAAATAGCTTGCGTTTTT-TTCCACATAGAAACGCCAAGACGGCTGGCGTTGCTGCCCAGG
CC-------------------------------AAACGCCAACGCCCAT-GGCGTTGCTAATTCAGAACAAAACAGTGCG
CTGATCTGACTGATTGACCATGAACCGCTGGCGCTGCAAAGCAAAGCAAAGCATCACACGCGTGCATGCACGCATGCGCC
GCTCTAGCTGCATGGTCATCATCGAGCACAGCTCCTCATTCATCTACTTTAATTTGCCATGCCGCC----ACGTACGTAC
GGCACACCCAGTGAGTCAGTGACCAAGCACGCATTGATTCATGCATGCATGCACGGTCGCGCGCCCGGTGCGTGCGCGGA
CAGCAGCGCAGCCTGTCTCGTCAGCATGGAGGCAAACTGTGCGCGCGTCAGTGCACTGTTTTTCTTCTGGGTTAGAAAAC
CTAGCTAGCTAGTGTTGGCAGTAAACTAGTAGTATCAGCTAGTTTATCTGTATGTGCAGCTCGTCGGCATCCAGTAGTAT
CTACCTATTTACTCGTGCATGCAAGCCCACTACCACTA
>chr5D_1
CTATGTCACATTAATGAATCT--GGATGAGATCCATGTTAGATGTTAGATGTTGTGTTGCATTAATGAATCTATGGATGA
TATCCATCTTGGATATCCATGATCAAGTTGTGTTGCATTAATGAGTCTATGGATGTTATATATGTTACTATGTGAAGATC
TAAAATAAGTATATGTGTATTTGTGGAACACAGTGAGTATTAATACGATGAGATCCAAAATGAGCACTCATATATCCTTG
TGCATTCTACGGTCACTCATCATCTGGATATCCATTATCAAGCTATATTTCAT-AAGAGCAGTGCTATACACACGATAGT
GTGCAGACGATGTGTGCACGACAATGCAACCAGCTCCGTCCATTGCATGGCAACAGTAGGCAGCAGGCCGCTAGATGCTT
ATCGTGTAGTGGTCGTGCACATATTTGTCGTCTGCAAAGTAGTTCCGTTTCATTAGTGAATCTATGGATGAGATCCATAT
TGGATATCCATCTTCAAGTTATGTTGCATTAATGAGTCTAT----GGATGTTAGATGTGTTACTATGAGAAGATCTAAAA
TGAGCATTTGTGTATTTGTGGAACATAGAGAGCATTAATCTGATGAGATACAAAATGAGCACCAGTATATCCTTGTGCAT
TCTACGGACACTCATCATTTGGATATTCATGATCAAGCTATGTTACATTAAAGAATCTATGGAAGCAACATGTGTATTAA
TAAAAGTAAAATCTGAAATGTGCATCAATTGTATTTATGAATATAAAGGGCATTATTAGCCGGAGGTGCAAAATGTGCAC
AGACTGGACACTAATTAATATGCATATCCATGATCAAGCGGCATACTTCATTTATGAATTCTCATTGCACGCACTATAAA
TAAAACTCAACCTCACGAACACCTC--------CAT----CCATCTCTACAATACACACCCTTCTCTATCCATTTCACTC
TATCTCCCTCTGCTTAAGGACAGTTCAAGGCTTGTAT-----CTAGCCTTCTAGCAATGGCAATAATGCCGCCGACCTCC
ATCTTCTTCTCCGTGATCGTCTTCATGCTCCTTTCCAATGCCATTACTACTCAAGCCGGTGGCTCTGGTGGTGGCAAACC
TAAGGCAACAAGCCTCGTAGTGGAAGCGTGCAAGAACGCTTCGGGCGAGACCCAAGACCCCGATGTCACAAAGGAATTCT
GTTTGTCGACCCTCCAGTCGGACAAGCGGAGCGCCGAGGCTAAAGACCTCCCTGGCTTGGTGCTCGTCTCCATCGACATC
CTTAAGGGCCGTGTCACTGATGCTAGTGTCAAGGTCAAGAAAATGCTACGAAACGCC-AAAAAAGGCACAATGGCGATGC
ACGCTCTCAGTATTTGTGAGCTGCAATATGAGAACGTGGTGAGCACGCTCAACATCTGCCAAGCCATGATTAAGGATCAC
CAAGGTGACAAGGGCATCCTGCAGTCCTTGCGTCTGCCCCACTGTGTGGATATCGCCTGCGACACTTCCAACGAGTGCCA
AACTGATCTTGAAGATGTGCCAGGGACGGAGGCGCTGCAAATTGATAACGAGAGGCTGCGCATTCTGTTCAACCTCAACG
CCGCCTTGGTTGTACCATATGATGTCCGTGATTAGAATAGTATAATGATTGTTTTTTATCTGCGAGAAAGGATAATAAAT
TTGAAATAA-TAATCATAACGTTTGCTGTGGCATAAATTTGACTCATTTTTGTCTTATGGTATATACCCATGGATGGTTA
TGATCATCCACACAACATTAATCACGAACAGAAATGAGTAAGCCAGAATGTTAGTA---CTATTTGGATAAAGAATATAT
ACCTCTAGCACGTCTACACAATATATATCTGCTATCTTTGAATATGATGAAGATAAAAGGAACTTGACGTGTAGAGCAAG
GCGGGCATTG----------------------------------------------------------------------
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>chr5B_1
CTATGTCACATTAATGAATCTATGGATGAGATCCATGTTAGATGTTAGATGTTGTATTGCATTAATGAATCTATGGATGA
TATACATCTTGGATATCCATGATCAAGTTGTGTTGCATTAATGGGTCTATGGATGTTATATGTGTTACTATGTGAAGATC
TAAAATAAGTATATGTGTATTTGTGGAACACATTGAGCATTAATACGATGAGATCTAAAATGAGCACTGATATATTCTTG
TGCATTCTACAGACGCTCATTATCCGGATATCCATTATCAAGCTATATTTCATTAAGACCAGTGCTATTCACACGATAGT
GTGCAGACGATGTGTGCACGGCAATACAATCAGCTCCGTCCATTGCATGGCAACAGTAGGCAGCAGGCCGCTAGATGCTT
ATCGTGTAGTGGTCGTGCACATATTTGTCATCTGCAAAGTAGTTCCGTTTCATTGATGAATCTATGGATGAGATCCATAT
TAGATATCCATCTTCAAGTTATGTTGCATTAATGAGTCTATATATGGATGTTAGATGTGTTACTATGAGAAGATCTAAAA
TGAGCATTTGTGTATTTGTGGAACATAGAGAGCATTAATCTGATGAGATACAAAATGAGCACCAGTATATCCTTGTGCAT
TCTACGGACACTCATCATTTGGATATTCATGATCAAGCTATGTTACATTAAAGAATCTATGGAATTAACATGTGTACTAA
TAAAAGTAAAATCTGAAATGTT------TTGTATTTATGAATATAAAGGGCATTATTAGCCGGAGGTGCAAAATGTGCAC
AGACTGGACACTGATTAATATGTGTATCCATGATCAAGCTGCATACTTCATTTATGAATTCTCACTGCACGCACTATACA
TAAAACACAACCTCACGAACACCTCCATCCATCCAT----CCATCTCTACAATACACACCCTTCTCTATCCATTTCACTC
TATCTCCCTCTGCCTAAGGACAGTTCAAGGCTTGTAT-----CTAGCCTTCTAACAATGGCAATAATGCCGCCGACCTCC
ATCGTCTTCTCCGTGATCGTCTTCATGCTCCTTTCCAGTGCCATTACTACTCAAGCCGACGGCTCTGGCGATGGCAAACC
TAAGGCAACAAGCCTTGTAGTGGAAGTGTGCAAGAACGCCTCGGGCGAGACCCAAGACCCTGATGTCACAAAGGAATTCT
GTTTGTCGACCCTCCAGTCGGACAAGCGAAGCGCCGAGGCTAAAGACCTCCCTGGCTTGGTGCTCGTCTCCATCGACATC
CTTAAGGGCCGTGTCACTGATGCTAGTGTCAAGGTCAAGAAAATGCTACAAAACGCC-AAAAAAGGCACAGTGGCGATGT
ACGCTCTCAGTATTTGTGAGCTGCAATATGAGAACGTGGTGAGCACGCTCAACATCTGCCAAGCCATGATTAAGGATCAC
CAAGGTGACAAGGGCATCCTGCACTCCTTGCGTCTGCCCCACTGTGTGGATATCGCTGGCGACACTTCCAACGAGTGCCA
AACTGATCTTGAAGATGTGCCAGGGACGGAGGCGCTGCAAACTGATAACGAGAGGCTGCGCATTCTGTTCAACCTCAACA
CCGCCTTGGTTGTACCATATGATGTCCGTGATTAGATTAGTATAATGATTGTTTTTGATCTGCGAGAAAGGATAATAAAT
TTGAAATAAATAATCATAACGTTTGTTGTGGCATAAATTTTACTCATTTTTGTCTTATGGTATATACCCATGGATGGTTA
TGATTATCCACACAACATTAATCACGGACAGAAATGAGTAAGCCAGAACGTTAGTACTACTATTTGGATAAAGAATATAT
ACCTCTGGCACGTCTACACAATATATGTCTGCTATCTTTGAATATGATGAAGATAAAAGGA-------------------
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>chr5D_447
TTAGATGTCTATTCTAGGAGAAGATCTAAAATGAGCATATGTGTATTTATGGAATATAGAGAGCATTAATACCATGAGCT
ACAAAACGAGCACCACTATATCCTAGTGCATTCTATGGGCACTCAACATTTGGATATCCATGATCAAGCTATGTTGCAAT
CATGAATCTATGAATGAGATCCATGTTATATGTTAGACTTCGACGTTGTGTTGCATTAATGAATCTATGTATGAGACCAA
TCTTGGATATGCATGATCAAGTTGTGTTGCATTAATGAGTCTCGATGTTATATGTGTTACTATGAGAAGATCTAAAATGA
GTATCTATGTATTTGTGGAACATAGAGAGCGTTAATACGACGAGATCCGAAATGAGCACCTATATATCCGTGTGCATTCT
ACAGACATTCATCATTTAGATATCACTGATCGGGCTAC-------------ATTAATGAATCTGTGGATGAGATCCATCT
TGGATATCCATGTTCAAGTTTTGTTGCAGTAATGAGTC----TATGGATGCTAGATGTGTTACTATGAAAAGATCTAAAA
TGAGCATTTGTGTATTTGTGGAACATAGAGAGCATTAATACAATGAGTTCCAAAATGAGCACCAGTATATCCATGTGCAT
TCCACTGACACTCATCATTTGGATATCCATGATCAAGCAATGTTACATTAAAGAATATGTGGAAGCTACATGTGTATTAA
AAAAG--AAAATCTGAAATGAGCATCAATTGTATTTGTGAATATAAAGGGCATTATTACCAGGAGGTGGAAAATGTGCAC
AGGTTGGACACTAATTAATATGCATATCTGTGATCGACCGGCATACTGCATTTATGAATTCTCAGTGCACGCACTATAAA
TAAAACTCAACTTCATGAACACCTC--------CATCCATCCATCTCTACAATACACATCCTTCTCTATCCATTTCACTC
CATCTCCCTCTGCTTCAATATAGTTAAAGGTTTCTATCTTAGCTAGCCTTCTAGCAATGGCAACAATGGCGCCGACCTCC
ATCGTCTTCTCCGTGGTCGTCTTCCTGCTCCTTTCCAATGCCATCACCACTCAAGCCGGCGGCTCTGGCAGTGGCAAACC
TAAGGCAACAAGCCTCATAGTGGAAGCGTGCAAGAACGCCTCAGGCGAGAGCCAAGACACCGGTGTCACAAAGGAATTCT
GTTTGTCGACCCTCCAGTTGGACAGTCGGAGCGCCAAGGCTAAAGACCTCTGTGACTTGGTGGTCATCTCGATTGACATC
CTGAAGGGCCGTGTCAGTGATGCTGGCGTCAAGGTAAAGAAAATGCTGCAAAACGCC-AAGAAAGGCACGCTGACAATGT
ATGCTCTCAGCATTTGTGAGTTGCAATATGAGAAGGTGGTGAGCACGCTCAACGTCTGCCAAGCTATGATTAGGGATCAC
CAAGGTGACAAGGGCGACCTGAAGTCATTGGGTCTACTCCATTGTGTGGATATGACCGGTGAGACAATCAAAGAGTGCGA
AAATGAGCTTGGAGATGTGCGAGGGGCGGAGGCGCTGCTTCGTGAAAACGAGGGGTTGCGCATTCTGGCCAACCTAAACA
GAGCCTTGGTTGCACCGTATGATGTC------------------------------------------------------
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>chr3A_1913
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------------GGCCGAAATCATTGTTCTGACCTTTTGAGTAATCTTTGTCAGAAAGTGAACCCAACATGAAAGTATTT
CACGATCTGA-CTCTTTTAACAACGCCACATCATGTGGCGTTTCTTCTCTGTATAAAAACGCCAAAATAGCTCGCATTTT
CGATCCATATTCAAATGCCAAGATAGCTCGCGTTTTTGTTTCACGTAGAAACGCCAAAATGCCTGGCGTTGCTGCCCAGA
CCCACATGCCATTACCTTTGGCGTTTCTACTGGAAACACCAACGGCCGTGGGCGTTGCTAAC----------ACAATGCA
CTGATCTGACCGATCGAGCATGAGCCGCTGACTCTGCAAAGCAAAGCAGAGCATCAGACGCGTGCATGCATGCATGCGCC
GCTCTAAGTGCATGGTCCTCATCGATCACAGCTCCTCATGCATCTACTTCAATTT-CCATGCCGCC----ACGTATGTAT
GGCACACCCAGCGG--------CCAAGCACGCATTGATTCATGCATGCATGCACGGTCGCGCGCCCGGTGCATGCACGGA
CAGCAGCGCAGCCTGTCTCATCAGCATAGAGGCGAACTGTGCGTGCGTCAGTGCACTGTTTTTCTTCTGGGTTAGAAAAC
CTAGCTAGCTAGTGTTGGCAGTAAACTAGT---ACCAGCTAGTTCATCTGTATGTG------------------------
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>chr3A_1913
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------------GGCCAAAATCACTGTTCTGACCTTTTTAGCAATTTTTGTCACAAAATGAACTCGACATGAAAGTATTT
CACGATCTGATC-CTTTTAGCAACGTCACAGTCCGTGGCGTTTCTTCTCCATATAAAAACGCTAAAATAGCTCGCGTTTC
AGCTCCACATTCAAACGCCAAGATAGCTTACGTTTTTGTTCCACATAGAAACGCTAAGACGGCTGGCGTTGCTGCCCAGG
CCCAAACGCCATTAGCTTTGGCGTTTCTACTGGAAACGCCAACGCCCAT-GATGTTGCTAATTCAGAACAAAACAGTGCG
TTGATCTGACTGATTGACCATGAACCGCTGGCGCTGCAAAGCAAAGCAAAGCATCACACGCGTGCATGCACGCATGCGCC
GCTCTAGCTGCATGGTCCTCATCGAGCACAGCTCCTCATTCATCTACTTTAATTTGCCATGCCGCTACGTACGTACGTAC
GGCACACCCAGTGAGTCAGTGACCAAGCACGCATTGATTCATGCATGCATGCACGGTCGCGCGCCCGGTGCGTGCGCGGA
CAGCAGCGCAGCCTGTCTCGTCAGCATGGAGGCAAACTGTGCGCGCGTCAGTGCATTGTTTTTCTTCTGGGTTAGAAAAC
CTAGCTAGCTAGTGTTGGCAGTAAACTAGT---ATCAGCTAGTTTATCTGTATGTGCAGCTCGTCGGCATCCAGTAGTAT
CTACATATTCACTCGTGCATGCAAGCCCACTACCACTA
>SNPs
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------S---------------------------------S-----------S---------------------------
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--------------------------------------------------------------------S-----------
-----------S--------------------------------------------------------------S-----
---------------------------------------------S----------------------------------
----------------S--------------S------------------------------------------------
--------------------------------------------------------SS----------------S-----
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---------------------------------------------------------------------S----------
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-------------------SS-----------------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------S------------------------------------------S--------
----------SS----------------------------------------------------S---------------
--------------------------------S-S---------------------------------------------
--------S------------S----------------------------------------------------------
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-----------------S--------------------------------------------------------------
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------------------------------SSS-----------------------------------------------
----S----S----------------------------
>forward_407
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-------------------------------------------------------------------CCGCTAGATGCTT
ATCGTGC-------------------------------------------------------------------------
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>reverse_1931
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----------TCGGCCGAAATCACTGTTCT--------------------------------------------------
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